Wall clock time and date at job start Wed Apr 1 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47334 * 269.99727 * 3 2 1 5 5 H 1.48501 * 109.47421 * 30.00091 * 3 2 1 6 6 H 1.48502 * 109.46996 * 149.99813 * 3 2 1 7 7 C 1.38813 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99756 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99580 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46514 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47180 * 55.00154 * 11 10 9 13 13 C 1.52997 * 109.47281 * 294.99565 * 11 10 9 14 14 C 1.53003 * 109.46968 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47132 * 60.00610 * 14 13 11 16 16 C 1.53002 * 109.46989 * 299.99703 * 15 14 13 17 17 C 1.53000 * 109.47255 * 60.00004 * 16 15 14 18 18 H 1.08995 * 109.47357 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47186 * 59.99725 * 17 16 15 20 20 C 1.34773 * 119.99903 * 85.00697 * 19 17 16 21 21 O 1.21623 * 120.00004 * 359.97438 * 20 19 17 22 22 C 1.47310 * 120.00500 * 180.02562 * 20 19 17 23 23 C 1.39010 * 120.90186 * 359.94961 * 22 20 19 24 24 C 1.39716 * 119.29553 * 180.02562 * 23 22 20 25 25 C 1.35265 * 121.07387 * 0.02562 * 24 23 22 26 26 N 1.35713 * 121.57736 * 0.02742 * 25 24 23 27 27 N 1.40210 * 134.09156 * 179.97438 * 26 25 24 28 28 N 1.29010 * 106.96303 * 180.02562 * 27 26 25 29 29 N 1.28598 * 110.78866 * 0.02562 * 28 27 26 30 30 C 1.32046 * 110.21443 * 0.02562 * 29 28 27 31 31 H 0.97004 * 119.99139 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99893 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47849 * 60.00225 * 10 9 7 34 34 H 1.08997 * 109.47256 * 299.99543 * 10 9 7 35 35 H 1.08999 * 109.46664 * 60.00687 * 13 11 10 36 36 H 1.08998 * 109.47494 * 300.00396 * 13 11 10 37 37 H 1.08998 * 109.47480 * 300.00581 * 14 13 11 38 38 H 1.09002 * 109.46738 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47302 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.47372 * 59.99447 * 15 14 13 41 41 H 1.08998 * 109.47228 * 299.99787 * 16 15 14 42 42 H 1.09000 * 109.47311 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00236 * 265.00068 * 19 17 16 44 44 H 1.07998 * 120.35244 * 0.04665 * 23 22 20 45 45 H 1.07993 * 119.46285 * 180.29499 * 24 23 22 46 46 H 1.08000 * 119.20592 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1119 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0011 12 1 5.8657 -1.5457 0.8429 13 6 6.0063 -1.4991 -1.3063 14 6 7.5105 -1.2190 -1.3059 15 6 8.2749 -2.5384 -1.1799 16 6 7.8848 -3.2309 0.1274 17 6 6.3807 -3.5110 0.1272 18 1 6.1027 -4.0040 1.0587 19 7 6.0458 -4.3794 -1.0043 20 6 6.1637 -5.7166 -0.8854 21 8 6.5486 -6.2025 0.1611 22 6 5.8276 -6.5899 -2.0231 23 6 5.3860 -6.0547 -3.2277 24 6 5.0759 -6.9141 -4.2848 25 6 5.1982 -8.2548 -4.1535 26 7 5.6246 -8.8195 -2.9954 27 7 5.8431 -10.1395 -2.5762 28 7 6.2546 -10.0833 -1.3548 29 7 6.3208 -8.8641 -0.9511 30 6 5.9452 -8.0433 -1.9149 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3623 0.0014 33 1 3.8490 -3.0425 -0.8891 34 1 3.8483 -3.0428 0.8908 35 1 5.4621 -0.5590 -1.3958 36 1 5.7567 -2.1450 -2.1481 37 1 7.7596 -0.5730 -0.4642 38 1 7.7884 -0.7261 -2.2376 39 1 9.3464 -2.3390 -1.1801 40 1 8.0257 -3.1846 -2.0217 41 1 8.1339 -2.5849 0.9692 42 1 8.4290 -4.1711 0.2170 43 1 5.7391 -3.9918 -1.8390 44 1 5.2840 -4.9860 -3.3453 45 1 4.7372 -6.5010 -5.2233 46 1 4.9507 -8.8910 -4.9903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733071695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:24 Heat of formation + Delta-G solvation = 96.243513 kcal Electronic energy + Delta-G solvation = -30313.122807 eV Core-core repulsion = 26239.939256 eV Total energy + Delta-G solvation = -4073.183551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.50379 -41.54566 -39.82659 -39.07017 -36.57832 -35.31109 -34.59485 -33.82878 -33.11817 -31.98359 -31.57611 -30.50085 -27.17165 -26.44518 -25.38838 -24.67751 -24.34528 -23.25410 -22.36148 -21.95006 -20.26574 -19.92040 -19.67012 -18.72770 -18.47329 -18.05038 -16.84417 -16.72271 -16.58554 -16.34840 -15.97627 -15.64699 -15.51911 -15.07092 -14.85990 -14.78783 -14.58872 -14.22933 -14.16469 -13.89556 -13.76989 -13.68659 -13.32390 -13.12156 -13.00725 -12.90266 -12.70548 -12.56569 -12.53885 -12.18083 -12.09224 -11.88948 -11.82063 -11.37413 -11.32232 -11.19817 -11.11199 -10.99961 -10.85353 -10.11059 -9.71661 -9.25705 -7.99753 -5.33230 -1.07872 -0.60904 0.56834 0.94736 1.40792 1.45081 1.46080 1.52466 1.93741 2.28456 2.47088 2.51653 2.83769 3.31880 3.35998 3.47259 3.57225 3.71668 3.80123 3.86756 3.99028 4.00231 4.18451 4.25712 4.33093 4.35175 4.49141 4.52678 4.55576 4.61358 4.71680 4.73046 4.76888 4.92502 4.97205 5.06189 5.12471 5.21006 5.30988 5.33840 5.34409 5.37046 5.47204 5.53662 5.63000 5.78617 6.23894 6.45758 7.11641 7.14683 7.15548 7.87179 8.07455 9.21963 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002994 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.298329 B = 9349.051298 C =10418.193259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.250 1.250 7 C -0.233 4.233 8 H 0.052 0.948 9 N -0.752 5.752 10 C 0.162 3.838 11 C -0.093 4.093 12 H 0.084 0.916 13 C -0.111 4.111 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.124 4.124 17 C 0.164 3.836 18 H 0.065 0.935 19 N -0.694 5.694 20 C 0.561 3.439 21 O -0.557 6.557 22 C -0.136 4.136 23 C 0.019 3.981 24 C -0.115 4.115 25 C 0.120 3.880 26 N -0.306 5.306 27 N -0.121 5.121 28 N -0.039 5.039 29 N -0.344 5.344 30 C 0.254 3.746 31 H 0.257 0.743 32 H 0.368 0.632 33 H 0.037 0.963 34 H 0.003 0.997 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.412 0.588 44 H 0.201 0.799 45 H 0.236 0.764 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.028 -7.425 -16.962 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.175 1.175 7 C -0.364 4.364 8 H 0.070 0.930 9 N -0.399 5.399 10 C 0.035 3.965 11 C -0.112 4.112 12 H 0.102 0.898 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.163 4.163 17 C 0.059 3.941 18 H 0.083 0.917 19 N -0.348 5.348 20 C 0.347 3.653 21 O -0.435 6.435 22 C -0.145 4.145 23 C -0.007 4.007 24 C -0.137 4.137 25 C -0.005 4.005 26 N -0.086 5.086 27 N -0.105 5.105 28 N -0.032 5.032 29 N -0.203 5.203 30 C -0.003 4.003 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.252 0.748 44 H 0.218 0.782 45 H 0.252 0.748 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 18.437 -9.376 -15.509 25.853 hybrid contribution -0.645 1.380 0.029 1.523 sum 17.792 -7.996 -15.480 24.903 Atomic orbital electron populations 1.69903 1.07332 1.26679 1.59766 1.25529 0.96065 1.01377 1.02609 0.85403 0.78581 0.79295 0.78468 1.19535 1.22965 1.17498 1.19001 0.82900 0.93241 1.41263 0.93026 1.42662 1.02230 1.04113 1.90855 1.20770 0.90456 0.87255 0.97984 1.21545 0.93060 0.95856 1.00768 0.89756 1.21571 0.96683 1.00660 0.95961 1.21551 0.93577 0.97339 1.02756 1.21468 1.00172 0.96333 0.96730 1.21858 0.93756 1.00712 0.99947 1.20817 0.95190 0.89036 0.89097 0.91670 1.45752 1.67314 1.04244 1.17505 1.17734 0.78096 0.82708 0.86757 1.90893 1.46968 1.75353 1.30305 1.20211 1.10793 0.85489 0.98040 1.22695 0.85443 1.04180 0.88335 1.21814 0.99882 0.89268 1.02754 1.22961 0.93917 0.96938 0.86723 1.49133 1.40565 1.06370 1.12515 1.82604 1.25580 0.93898 1.08402 1.77974 1.08008 1.13597 1.03623 1.75133 1.25274 0.94860 1.24995 1.23823 0.96936 0.95010 0.84546 0.93413 0.79807 0.94461 0.97871 0.92374 0.90320 0.92084 0.90228 0.91070 0.91110 0.90409 0.92785 0.74802 0.78230 0.74787 0.75697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.72 13.97 21.65 0.30 -61.42 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.96 42.94 27.74 68.60 1.90 44.85 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 7 C -0.23 -12.72 10.47 84.03 0.88 -11.84 16 8 H 0.05 3.14 8.06 -2.90 -0.02 3.12 16 9 N -0.75 -32.10 5.13 -343.45 -1.76 -33.87 16 10 C 0.16 5.44 5.42 86.38 0.47 5.91 16 11 C -0.09 -2.21 2.02 -10.79 -0.02 -2.23 16 12 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.11 -2.05 4.90 30.59 0.15 -1.90 16 14 C -0.11 -1.61 5.92 30.60 0.18 -1.43 16 15 C -0.11 -1.48 5.77 30.60 0.18 -1.30 16 16 C -0.12 -2.32 5.60 30.59 0.17 -2.15 16 17 C 0.16 3.65 2.23 45.00 0.10 3.75 16 18 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 19 N -0.69 -13.14 3.57 -445.89 -1.59 -14.73 16 20 C 0.56 14.04 7.74 86.63 0.67 14.71 16 21 O -0.56 -19.91 15.94 -4.10 -0.07 -19.98 16 22 C -0.14 -2.62 6.06 -18.63 -0.11 -2.73 16 23 C 0.02 0.12 9.63 22.81 0.22 0.34 16 24 C -0.11 -0.04 9.92 21.94 0.22 0.18 16 25 C 0.12 0.74 11.15 83.41 0.93 1.67 16 26 N -0.31 -6.10 3.94 -188.68 -0.74 -6.85 16 27 N -0.12 -3.27 13.99 37.02 0.52 -2.76 16 28 N -0.04 -1.30 13.36 37.02 0.49 -0.81 16 29 N -0.34 -12.03 11.75 -52.05 -0.61 -12.64 16 30 C 0.25 6.70 7.85 135.75 1.07 7.76 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.37 14.72 4.71 -92.71 -0.44 14.28 16 33 H 0.04 1.18 7.61 -2.39 -0.02 1.16 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 35 H 0.06 1.31 7.18 -2.39 -0.02 1.29 16 36 H 0.08 1.10 6.51 -2.39 -0.02 1.09 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.81 7.60 -2.39 -0.02 0.79 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.41 5.00 4.77 -92.71 -0.44 4.55 16 44 H 0.20 -0.24 6.49 -2.91 -0.02 -0.26 16 45 H 0.24 -2.48 8.06 -2.91 -0.02 -2.50 16 46 H 0.23 -0.56 8.06 -2.91 -0.02 -0.59 16 Total: -1.00 -91.59 372.23 4.10 -87.49 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.10 Total: 13.15 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.56 Total: 7.56 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -3.40 Total: -133.07 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.85 kcal Total: -91.59 4.10 -87.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.735 kcal (2) G-P(sol) polarization free energy of solvation -91.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds