Wall clock time and date at job start Wed Apr 1 2020 04:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09002 * 109.47682 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47119 * 299.99906 * 17 16 15 20 20 C 1.34784 * 120.00276 * 275.00139 * 19 17 16 21 21 O 1.21626 * 119.99369 * 359.97438 * 20 19 17 22 22 C 1.47307 * 120.00083 * 180.02562 * 20 19 17 23 23 C 1.39006 * 120.90708 * 359.71451 * 22 20 19 24 24 C 1.39723 * 119.28768 * 179.80069 * 23 22 20 25 25 C 1.35254 * 121.08120 * 0.46925 * 24 23 22 26 26 N 1.35717 * 121.57700 * 359.78603 * 25 24 23 27 27 N 1.40203 * 134.09293 * 179.97438 * 26 25 24 28 28 N 1.29018 * 106.96164 * 179.97438 * 27 26 25 29 29 N 1.28591 * 110.78719 * 0.02562 * 28 27 26 30 30 C 1.32046 * 110.21361 * 359.97438 * 29 28 27 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 36 36 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 37 37 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 38 38 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 39 39 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 40 40 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 43 43 H 0.97002 * 119.99859 * 95.00085 * 19 17 16 44 44 H 1.07995 * 120.35404 * 0.03066 * 23 22 20 45 45 H 1.08005 * 119.45453 * 180.25258 * 24 23 22 46 46 H 1.08004 * 119.21321 * 179.76418 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 1 5.8627 -1.5427 -0.8524 13 6 6.0112 -1.5027 1.2964 14 6 7.5154 -1.2226 1.2913 15 6 8.2794 -2.5416 1.1584 16 6 7.8844 -3.2302 -0.1495 17 6 6.3803 -3.5102 -0.1445 18 1 6.0989 -4.0012 -1.0761 19 7 6.0496 -4.3820 0.9855 20 6 6.1672 -5.7190 0.8622 21 8 6.5474 -6.2017 -0.1875 22 6 5.8342 -6.5956 1.9982 23 6 5.4026 -6.0638 3.2079 24 6 5.0918 -6.9268 4.2619 25 6 5.2133 -8.2670 4.1260 26 7 5.6360 -8.8282 2.9648 27 7 5.8537 -10.1468 2.5411 28 7 6.2611 -10.0868 1.3184 29 7 6.3264 -8.8664 0.9184 30 6 5.9543 -8.0487 1.8861 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.8521 -3.0451 0.8825 34 1 3.8454 -3.0397 -0.8974 35 1 5.4673 -0.5628 1.3909 36 1 5.7650 -2.1512 2.1372 37 1 7.7969 -0.7324 2.2233 38 1 7.7614 -0.5740 0.4506 39 1 8.0334 -3.1902 1.9992 40 1 9.3509 -2.3420 1.1543 41 1 8.4282 -4.1701 -0.2440 42 1 8.1303 -2.5815 -0.9903 43 1 5.7461 -3.9970 1.8225 44 1 5.3050 -4.9953 3.3304 45 1 4.7523 -6.5167 5.2016 46 1 4.9685 -8.9059 4.9616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733071703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:30 Heat of formation + Delta-G solvation = 123.526307 kcal Electronic energy + Delta-G solvation = -30312.441525 eV Core-core repulsion = 26240.441045 eV Total energy + Delta-G solvation = -4072.000480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.66804 -40.61286 -39.06965 -38.14565 -34.92214 -34.48401 -33.74845 -32.37150 -32.04700 -31.20125 -30.16598 -29.59926 -26.00064 -25.42922 -24.69010 -23.78988 -22.86717 -22.24164 -21.48599 -20.73596 -19.38940 -19.07958 -18.10860 -17.88535 -17.50935 -17.19647 -16.23986 -15.83772 -15.46545 -15.05627 -14.78979 -14.54897 -14.18481 -14.13143 -13.99287 -13.56223 -13.44000 -13.39436 -12.97530 -12.85378 -12.80244 -12.75166 -12.38499 -12.20450 -11.91312 -11.76126 -11.63231 -11.26009 -11.16867 -11.06524 -10.87382 -10.65429 -10.58181 -10.33415 -10.15088 -10.09767 -10.02907 -9.63349 -9.18875 -8.99920 -8.93357 -7.29220 -5.82320 -3.18253 -0.46209 0.08933 1.24403 1.81637 2.15708 2.77086 3.08573 3.16476 3.30115 3.34116 3.40239 3.56237 3.87767 4.03579 4.32620 4.53048 4.60420 4.61723 4.70367 4.73982 4.86355 4.99631 5.02244 5.08027 5.14005 5.17016 5.37412 5.41554 5.42791 5.48659 5.49641 5.57173 5.63863 5.71418 5.86449 5.89815 5.98487 6.02866 6.07915 6.16231 6.26993 6.35522 6.41542 6.62058 6.66421 7.29017 7.93744 8.00953 8.06971 8.36467 9.15538 9.87612 10.07115 11.36096 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.002993 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.363737 B = 9353.749458 C =10421.406422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.164 3.836 11 C -0.107 4.107 12 H 0.088 0.912 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.130 4.130 17 C 0.158 3.842 18 H 0.095 0.905 19 N -0.708 5.708 20 C 0.561 3.439 21 O -0.501 6.501 22 C -0.096 4.096 23 C -0.018 4.018 24 C -0.141 4.141 25 C 0.127 3.873 26 N -0.309 5.309 27 N -0.108 5.108 28 N -0.009 5.009 29 N -0.289 5.289 30 C 0.273 3.727 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.025 0.975 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.398 0.602 44 H 0.164 0.836 45 H 0.177 0.823 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.539 -9.740 12.800 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.037 3.963 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.169 4.169 17 C 0.054 3.946 18 H 0.113 0.887 19 N -0.362 5.362 20 C 0.345 3.655 21 O -0.375 6.375 22 C -0.105 4.105 23 C -0.044 4.044 24 C -0.165 4.165 25 C 0.000 4.000 26 N -0.089 5.089 27 N -0.091 5.091 28 N -0.002 5.002 29 N -0.146 5.146 30 C 0.014 3.986 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.235 0.765 44 H 0.181 0.819 45 H 0.194 0.806 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 16.897 -11.682 11.302 23.446 hybrid contribution -0.033 2.107 1.105 2.380 sum 16.864 -9.575 12.407 23.022 Atomic orbital electron populations 1.69699 1.05140 1.25850 1.57462 1.24675 0.95214 0.97197 1.02020 0.86558 0.79112 0.85007 0.77829 1.21075 1.21779 1.20329 1.19043 0.80650 0.94679 1.43109 0.89326 1.42709 1.03997 1.02130 1.91171 1.20625 0.87723 0.89276 0.98725 1.21711 0.96517 0.95156 0.99256 0.89376 1.21564 0.95220 1.01428 0.96791 1.21602 0.95427 0.97135 1.01790 1.21494 0.99465 0.96649 0.97727 1.21927 0.95545 1.01050 0.98334 1.21005 0.94141 0.89827 0.89665 0.88739 1.45939 1.68016 1.04946 1.17259 1.17373 0.79180 0.82203 0.86769 1.90921 1.44346 1.74572 1.27669 1.20358 1.06411 0.87058 0.96633 1.22072 0.90110 1.02014 0.90191 1.21050 1.02963 0.90689 1.01789 1.21806 0.95452 0.95265 0.87456 1.49009 1.40825 1.07561 1.11550 1.82816 1.25140 0.92338 1.08781 1.78061 1.06544 1.13028 1.02588 1.75307 1.22776 0.94130 1.22372 1.23610 0.96577 0.93991 0.84382 0.93028 0.80614 0.95743 0.95394 0.90753 0.92464 0.92148 0.91847 0.92293 0.92286 0.91368 0.90759 0.76478 0.81865 0.80602 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.17 27.74 -169.99 -4.71 16.45 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 7 C -0.24 -6.64 10.47 -15.06 -0.16 -6.80 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.52 5.13 -59.91 -0.31 -16.83 16 10 C 0.16 2.82 5.42 -4.04 -0.02 2.80 16 11 C -0.11 -1.36 2.02 -90.62 -0.18 -1.55 16 12 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 13 C -0.11 -1.26 4.90 -26.73 -0.13 -1.39 16 14 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 15 C -0.12 -0.99 5.77 -26.73 -0.15 -1.14 16 16 C -0.13 -1.30 5.60 -26.73 -0.15 -1.45 16 17 C 0.16 1.81 2.23 -67.93 -0.15 1.66 16 18 H 0.09 1.27 7.57 -51.93 -0.39 0.88 16 19 N -0.71 -7.24 3.57 -54.92 -0.20 -7.43 16 20 C 0.56 6.97 7.74 -12.57 -0.10 6.87 16 21 O -0.50 -8.33 15.94 5.25 0.08 -8.24 16 22 C -0.10 -0.98 6.06 -102.72 -0.62 -1.60 16 23 C -0.02 -0.10 9.63 -38.74 -0.37 -0.47 16 24 C -0.14 -0.46 9.92 -40.09 -0.40 -0.86 16 25 C 0.13 0.66 11.15 -16.90 -0.19 0.47 16 26 N -0.31 -3.23 3.94 -10.99 -0.04 -3.27 16 27 N -0.11 -1.41 13.99 60.35 0.84 -0.56 16 28 N -0.01 -0.14 13.36 60.35 0.81 0.66 16 29 N -0.29 -4.66 11.75 32.20 0.38 -4.28 16 30 C 0.27 3.52 7.85 -154.52 -1.21 2.31 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.36 7.66 4.71 -40.82 -0.19 7.47 16 33 H 0.02 0.41 7.61 -51.93 -0.40 0.02 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.01 7.18 -51.93 -0.37 0.64 16 36 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.47 7.60 -51.93 -0.39 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.40 3.15 4.77 -40.82 -0.19 2.95 16 44 H 0.16 0.45 6.49 -52.49 -0.34 0.11 16 45 H 0.18 -0.12 8.06 -52.48 -0.42 -0.54 16 46 H 0.18 0.27 8.06 -52.48 -0.42 -0.15 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -37.25 372.23 -6.88 -44.12 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.02 Total: 4.03 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.09 Total: -2.40 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 2.26 Total: -59.57 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.25 -6.88 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.650 kcal (2) G-P(sol) polarization free energy of solvation -37.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds