Wall clock time and date at job start Wed Apr 1 2020 04:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09002 * 109.47682 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47119 * 299.99906 * 17 16 15 20 20 C 1.34784 * 120.00276 * 275.00139 * 19 17 16 21 21 O 1.21626 * 119.99369 * 359.97438 * 20 19 17 22 22 C 1.47307 * 120.00083 * 180.02562 * 20 19 17 23 23 C 1.39006 * 120.90708 * 359.71451 * 22 20 19 24 24 C 1.39723 * 119.28768 * 179.80069 * 23 22 20 25 25 C 1.35254 * 121.08120 * 0.46925 * 24 23 22 26 26 N 1.35717 * 121.57700 * 359.78603 * 25 24 23 27 27 N 1.40203 * 134.09293 * 179.97438 * 26 25 24 28 28 N 1.29018 * 106.96164 * 179.97438 * 27 26 25 29 29 N 1.28591 * 110.78719 * 0.02562 * 28 27 26 30 30 C 1.32046 * 110.21361 * 359.97438 * 29 28 27 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 36 36 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 37 37 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 38 38 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 39 39 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 40 40 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 43 43 H 0.97002 * 119.99859 * 95.00085 * 19 17 16 44 44 H 1.07995 * 120.35404 * 0.03066 * 23 22 20 45 45 H 1.08005 * 119.45453 * 180.25258 * 24 23 22 46 46 H 1.08004 * 119.21321 * 179.76418 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 1 5.8627 -1.5427 -0.8524 13 6 6.0112 -1.5027 1.2964 14 6 7.5154 -1.2226 1.2913 15 6 8.2794 -2.5416 1.1584 16 6 7.8844 -3.2302 -0.1495 17 6 6.3803 -3.5102 -0.1445 18 1 6.0989 -4.0012 -1.0761 19 7 6.0496 -4.3820 0.9855 20 6 6.1672 -5.7190 0.8622 21 8 6.5474 -6.2017 -0.1875 22 6 5.8342 -6.5956 1.9982 23 6 5.4026 -6.0638 3.2079 24 6 5.0918 -6.9268 4.2619 25 6 5.2133 -8.2670 4.1260 26 7 5.6360 -8.8282 2.9648 27 7 5.8537 -10.1468 2.5411 28 7 6.2611 -10.0868 1.3184 29 7 6.3264 -8.8664 0.9184 30 6 5.9543 -8.0487 1.8861 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 3.8521 -3.0451 0.8825 34 1 3.8454 -3.0397 -0.8974 35 1 5.4673 -0.5628 1.3909 36 1 5.7650 -2.1512 2.1372 37 1 7.7969 -0.7324 2.2233 38 1 7.7614 -0.5740 0.4506 39 1 8.0334 -3.1902 1.9992 40 1 9.3509 -2.3420 1.1543 41 1 8.4282 -4.1701 -0.2440 42 1 8.1303 -2.5815 -0.9903 43 1 5.7461 -3.9970 1.8225 44 1 5.3050 -4.9953 3.3304 45 1 4.7523 -6.5167 5.2016 46 1 4.9685 -8.9059 4.9616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733071703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:29 Heat of formation + Delta-G solvation = 96.196680 kcal Electronic energy + Delta-G solvation = -30313.626626 eV Core-core repulsion = 26240.441045 eV Total energy + Delta-G solvation = -4073.185582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.50493 -41.54473 -39.82658 -39.06971 -36.57762 -35.31113 -34.59448 -33.82924 -33.11728 -31.98411 -31.57499 -30.50028 -27.17179 -26.44507 -25.38873 -24.67762 -24.34587 -23.25376 -22.36111 -21.94665 -20.26393 -19.92057 -19.67171 -18.72705 -18.47353 -18.05092 -16.84506 -16.72239 -16.58427 -16.34459 -15.97558 -15.65059 -15.51814 -15.07094 -14.85905 -14.78612 -14.58082 -14.22952 -14.16896 -13.89692 -13.77521 -13.68651 -13.32483 -13.11978 -13.02196 -12.89716 -12.71472 -12.56568 -12.51461 -12.18079 -12.10766 -11.85738 -11.81298 -11.37529 -11.32235 -11.20265 -11.11814 -11.00350 -10.85230 -10.10976 -9.71681 -9.25625 -7.99651 -5.33181 -1.07855 -0.60926 0.56857 0.94745 1.40384 1.45428 1.46054 1.52598 1.93824 2.28492 2.47056 2.51788 2.83800 3.32272 3.36033 3.47249 3.57179 3.71667 3.80283 3.86712 3.99205 4.00247 4.18426 4.25848 4.33101 4.35248 4.49143 4.52736 4.55573 4.61451 4.71734 4.73012 4.76924 4.92528 4.97221 5.06318 5.12573 5.21123 5.30979 5.33875 5.34386 5.37105 5.47346 5.53703 5.63006 5.78747 6.23883 6.45747 7.11737 7.14687 7.15564 7.87234 8.07559 9.22021 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.002993 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.363737 B = 9353.749458 C =10421.406422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.239 1.239 7 C -0.233 4.233 8 H 0.052 0.948 9 N -0.752 5.752 10 C 0.162 3.838 11 C -0.093 4.093 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.124 4.124 17 C 0.163 3.837 18 H 0.065 0.935 19 N -0.694 5.694 20 C 0.561 3.439 21 O -0.557 6.557 22 C -0.136 4.136 23 C 0.019 3.981 24 C -0.115 4.115 25 C 0.120 3.880 26 N -0.306 5.306 27 N -0.121 5.121 28 N -0.039 5.039 29 N -0.344 5.344 30 C 0.254 3.746 31 H 0.257 0.743 32 H 0.368 0.632 33 H 0.037 0.963 34 H 0.004 0.996 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.412 0.588 44 H 0.201 0.799 45 H 0.236 0.764 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.138 -7.491 16.946 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.163 1.163 7 C -0.364 4.364 8 H 0.070 0.930 9 N -0.398 5.398 10 C 0.035 3.965 11 C -0.112 4.112 12 H 0.104 0.896 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.163 4.163 17 C 0.059 3.941 18 H 0.084 0.916 19 N -0.348 5.348 20 C 0.347 3.653 21 O -0.435 6.435 22 C -0.145 4.145 23 C -0.007 4.007 24 C -0.137 4.137 25 C -0.005 4.005 26 N -0.086 5.086 27 N -0.105 5.105 28 N -0.032 5.032 29 N -0.202 5.202 30 C -0.003 4.003 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.252 0.748 44 H 0.218 0.782 45 H 0.252 0.748 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 18.542 -9.439 15.494 25.942 hybrid contribution -0.657 1.386 -0.030 1.534 sum 17.885 -8.054 15.464 24.977 Atomic orbital electron populations 1.69895 1.07351 1.26691 1.59752 1.25528 0.96064 1.01387 1.02607 0.85417 0.79126 0.79345 0.77928 1.21137 1.22461 1.16315 1.18997 0.82906 0.93230 1.41270 0.93040 1.42655 1.02216 1.04114 1.90861 1.20769 0.90454 0.87262 0.97978 1.21547 0.93044 0.95879 1.00762 0.89633 1.21568 0.96660 1.00640 0.95976 1.21549 0.93574 0.97351 1.02737 1.21469 1.00154 0.96339 0.96735 1.21860 0.93751 1.00729 0.99935 1.20820 0.95222 0.88977 0.89129 0.91640 1.45758 1.67455 1.04235 1.17385 1.17737 0.78067 0.82709 0.86785 1.90894 1.47052 1.75515 1.30048 1.20213 1.10843 0.85494 0.97976 1.22694 0.85478 1.04185 0.88299 1.21815 0.99855 0.89237 1.02814 1.22959 0.93951 0.97017 0.86618 1.49129 1.40606 1.06356 1.12481 1.82605 1.25632 0.93997 1.08256 1.77974 1.08018 1.13509 1.03704 1.75130 1.25283 0.94894 1.24943 1.23824 0.96957 0.94987 0.84560 0.93412 0.79799 0.94543 0.97805 0.92461 0.90388 0.90294 0.92048 0.91128 0.91065 0.92786 0.90368 0.74819 0.78237 0.74783 0.75697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.77 13.97 21.65 0.30 -61.46 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.95 42.91 27.74 68.60 1.90 44.81 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.24 -9.16 6.52 99.48 0.65 -8.51 16 7 C -0.23 -12.71 10.47 84.03 0.88 -11.83 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -32.03 5.13 -343.46 -1.76 -33.80 16 10 C 0.16 5.43 5.42 86.38 0.47 5.90 16 11 C -0.09 -2.21 2.02 -10.79 -0.02 -2.23 16 12 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 13 C -0.11 -2.06 4.90 30.60 0.15 -1.91 16 14 C -0.11 -1.61 5.92 30.60 0.18 -1.43 16 15 C -0.11 -1.47 5.77 30.60 0.18 -1.30 16 16 C -0.12 -2.31 5.60 30.59 0.17 -2.14 16 17 C 0.16 3.64 2.23 44.99 0.10 3.74 16 18 H 0.07 1.86 7.57 -2.39 -0.02 1.85 16 19 N -0.69 -13.13 3.57 -445.90 -1.59 -14.73 16 20 C 0.56 14.03 7.74 86.63 0.67 14.70 16 21 O -0.56 -19.89 15.94 -4.11 -0.07 -19.96 16 22 C -0.14 -2.61 6.06 -18.63 -0.11 -2.73 16 23 C 0.02 0.12 9.63 22.81 0.22 0.34 16 24 C -0.11 -0.04 9.92 21.94 0.22 0.18 16 25 C 0.12 0.74 11.15 83.40 0.93 1.67 16 26 N -0.31 -6.10 3.94 -188.68 -0.74 -6.84 16 27 N -0.12 -3.28 13.99 37.02 0.52 -2.76 16 28 N -0.04 -1.30 13.36 37.02 0.49 -0.81 16 29 N -0.34 -12.02 11.75 -52.05 -0.61 -12.63 16 30 C 0.25 6.69 7.85 135.76 1.07 7.76 16 31 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.37 14.67 4.71 -92.71 -0.44 14.23 16 33 H 0.04 1.15 7.61 -2.38 -0.02 1.13 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.06 1.31 7.18 -2.39 -0.02 1.30 16 36 H 0.08 1.11 6.51 -2.39 -0.02 1.09 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.81 7.60 -2.39 -0.02 0.79 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.41 5.01 4.77 -92.71 -0.44 4.57 16 44 H 0.20 -0.24 6.49 -2.91 -0.02 -0.26 16 45 H 0.24 -2.48 8.06 -2.91 -0.02 -2.50 16 46 H 0.23 -0.57 8.06 -2.91 -0.02 -0.59 16 Total: -1.00 -91.62 372.23 4.10 -87.52 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.10 Total: 13.13 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.56 Total: 7.53 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -3.40 Total: -133.03 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.07 Total: -19.96 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -91.62 4.10 -87.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.714 kcal (2) G-P(sol) polarization free energy of solvation -91.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds