Wall clock time and date at job start Wed Apr 1 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00308 * 2 1 4 4 H 1.48495 * 109.47365 * 270.00044 * 3 2 1 5 5 H 1.48497 * 109.46842 * 30.00027 * 3 2 1 6 6 H 1.48503 * 109.47169 * 149.99836 * 3 2 1 7 7 C 1.38809 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47175 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47111 * 54.99974 * 11 10 9 13 13 C 1.53001 * 109.47340 * 295.00531 * 11 10 9 14 14 C 1.52998 * 109.47636 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47322 * 59.99238 * 14 13 11 16 16 C 1.52996 * 109.47099 * 300.00769 * 15 14 13 17 17 C 1.52997 * 109.47463 * 174.99973 * 11 10 9 18 18 H 1.09003 * 109.46957 * 59.99906 * 17 11 10 19 19 N 1.46499 * 109.47235 * 300.00217 * 17 11 10 20 20 C 1.34780 * 119.99968 * 154.99582 * 19 17 11 21 21 O 1.21616 * 119.99941 * 359.97438 * 20 19 17 22 22 C 1.47315 * 119.99566 * 180.02562 * 20 19 17 23 23 C 1.39004 * 120.90779 * 0.02562 * 22 20 19 24 24 C 1.39723 * 119.29012 * 179.97438 * 23 22 20 25 25 C 1.35253 * 121.08087 * 0.02562 * 24 23 22 26 26 N 1.35715 * 121.57449 * 359.97438 * 25 24 23 27 27 N 1.40202 * 134.08964 * 180.02562 * 26 25 24 28 28 N 1.29024 * 106.96411 * 179.97438 * 27 26 25 29 29 N 1.28590 * 110.78339 * 359.75003 * 28 27 26 30 30 C 1.32040 * 110.21591 * 0.41814 * 29 28 27 31 31 H 0.97000 * 119.99607 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99589 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46926 * 60.00441 * 10 9 7 34 34 H 1.08997 * 109.46999 * 300.00288 * 10 9 7 35 35 H 1.08994 * 109.47694 * 59.99617 * 13 11 10 36 36 H 1.09003 * 109.46564 * 299.99778 * 13 11 10 37 37 H 1.08998 * 109.46822 * 299.99917 * 14 13 11 38 38 H 1.08997 * 109.47737 * 179.97438 * 14 13 11 39 39 H 1.08995 * 109.47365 * 180.02562 * 15 14 13 40 40 H 1.08998 * 109.46619 * 60.00554 * 15 14 13 41 41 H 1.09003 * 109.46827 * 299.99693 * 16 15 14 42 42 H 1.09007 * 109.47453 * 180.02562 * 16 15 14 43 43 H 0.97002 * 119.99830 * 334.99559 * 19 17 11 44 44 H 1.07994 * 120.35331 * 359.96236 * 23 22 20 45 45 H 1.07998 * 119.45531 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.21304 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3799 -4.7126 -0.8433 13 6 0.2683 -4.8114 1.3058 14 6 -0.7255 -5.9746 1.3055 15 6 0.0357 -7.2959 1.1800 16 6 0.8311 -7.3041 -0.1269 17 6 1.8245 -6.1411 -0.1269 18 1 2.5083 -6.2482 0.7152 19 7 2.5860 -6.1491 -1.3784 20 6 3.6856 -6.9199 -1.4932 21 8 4.0460 -7.6085 -0.5577 22 6 4.4517 -6.9274 -2.7515 23 6 4.0577 -6.1466 -3.8319 24 6 4.8096 -6.1792 -5.0092 25 6 5.9111 -6.9571 -5.1128 26 7 6.3313 -7.7348 -4.0830 27 7 7.4046 -8.6187 -3.9028 28 7 7.3099 -9.0865 -2.7041 29 7 6.2902 -8.5886 -2.0992 30 6 5.6476 -7.7561 -2.8977 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6845 -3.7146 0.8895 34 1 2.6846 -3.7146 -0.8905 35 1 -0.2737 -3.8701 1.3954 36 1 0.9521 -4.9185 2.1479 37 1 -1.4093 -5.8680 0.4634 38 1 -1.2919 -5.9690 2.2368 39 1 -0.6723 -8.1246 1.1794 40 1 0.7195 -7.4025 2.0221 41 1 0.1472 -7.1975 -0.9690 42 1 1.3731 -8.2456 -0.2166 43 1 2.2988 -5.5996 -2.1244 44 1 3.1798 -5.5216 -3.7622 45 1 4.5057 -5.5739 -5.8504 46 1 6.4702 -6.9589 -6.0368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733071705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:35 Heat of formation + Delta-G solvation = 116.133323 kcal Electronic energy + Delta-G solvation = -29943.195770 eV Core-core repulsion = 25870.874706 eV Total energy + Delta-G solvation = -4072.321064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.65239 -40.37293 -38.98108 -38.09069 -34.68212 -34.56136 -34.04122 -32.35765 -31.95518 -31.15008 -29.69593 -29.13579 -25.88990 -25.22008 -24.66753 -23.77566 -23.06992 -22.16898 -20.86854 -20.64699 -19.95095 -18.97913 -17.96074 -17.86730 -17.18028 -17.09146 -16.26352 -15.92391 -15.15940 -14.96615 -14.72301 -14.33786 -14.15006 -14.06490 -13.81680 -13.48399 -13.33507 -13.27546 -13.08245 -12.79549 -12.76813 -12.69221 -12.48511 -11.90143 -11.73820 -11.56874 -11.24783 -11.14203 -10.94022 -10.92131 -10.76112 -10.63568 -10.48200 -10.29034 -10.17162 -10.04172 -9.92437 -9.69967 -9.13662 -8.96622 -8.88772 -6.97594 -5.82616 -3.11008 -0.44027 0.10733 1.25924 1.83053 2.17827 2.79773 3.11176 3.18620 3.38465 3.45020 3.46267 3.58173 3.90277 4.06390 4.34923 4.51921 4.64555 4.76514 4.86529 4.88200 4.99326 5.03522 5.12359 5.18953 5.21382 5.31447 5.42855 5.51893 5.54454 5.59194 5.62772 5.70146 5.85768 5.88268 6.05238 6.09290 6.15298 6.21564 6.25683 6.34273 6.43163 6.52689 6.63344 6.71777 6.84969 7.34483 7.64984 8.04592 8.08235 8.36577 9.48093 10.05357 10.40127 11.40105 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.003136 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.859497 B = 8925.711743 C =11104.713535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.156 3.844 18 H 0.092 0.908 19 N -0.711 5.711 20 C 0.560 3.440 21 O -0.502 6.502 22 C -0.096 4.096 23 C -0.017 4.017 24 C -0.141 4.141 25 C 0.126 3.874 26 N -0.309 5.309 27 N -0.109 5.109 28 N -0.010 5.010 29 N -0.290 5.290 30 C 0.273 3.727 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.400 0.600 44 H 0.166 0.834 45 H 0.177 0.823 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -14.911 -11.611 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.052 3.948 18 H 0.110 0.890 19 N -0.363 5.363 20 C 0.345 3.655 21 O -0.376 6.376 22 C -0.105 4.105 23 C -0.043 4.043 24 C -0.164 4.164 25 C -0.001 4.001 26 N -0.089 5.089 27 N -0.092 5.092 28 N -0.003 5.003 29 N -0.146 5.146 30 C 0.014 3.986 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.235 0.765 44 H 0.184 0.816 45 H 0.194 0.806 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.370 -16.393 -10.473 19.937 hybrid contribution -0.450 1.966 -0.978 2.241 sum 3.920 -14.426 -11.451 18.831 Atomic orbital electron populations 1.69650 1.05067 1.25662 1.57777 1.24713 0.95499 0.97618 1.03011 0.86220 0.78744 0.83930 0.77485 1.21766 1.21756 1.20783 1.19209 0.90991 0.84189 1.42673 0.91328 1.42362 1.05811 0.99847 1.89481 1.20671 0.93007 0.85362 0.97933 1.21603 0.97690 0.93194 0.99403 0.90595 1.21494 0.97678 0.98900 0.96439 1.21601 0.98066 0.94508 1.01730 1.21488 0.98788 0.97679 0.97364 1.21893 0.97789 0.98421 0.98418 1.21081 0.92683 0.95116 0.85962 0.88999 1.45935 1.27074 1.45584 1.17701 1.17374 0.80798 0.81123 0.86242 1.90916 1.67632 1.40388 1.38664 1.20377 0.93752 0.99108 0.97303 1.22107 0.98449 0.93230 0.90506 1.21061 0.94477 1.00608 1.00294 1.21803 0.96462 0.90133 0.91687 1.49006 1.19147 1.28904 1.11892 1.82810 1.04640 1.07433 1.14274 1.78059 1.10155 1.13723 0.98329 1.75301 1.03785 1.11959 1.23585 1.23618 0.94908 0.96766 0.83263 0.93511 0.78191 0.96274 0.96508 0.90159 0.91945 0.92018 0.92051 0.92097 0.91776 0.91833 0.91628 0.76469 0.81642 0.80592 0.79837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.05 5.33 -59.91 -0.32 -17.37 16 10 C 0.16 2.88 5.57 -4.04 -0.02 2.86 16 11 C -0.10 -1.39 1.80 -90.62 -0.16 -1.56 16 12 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.11 -1.51 5.08 -26.73 -0.14 -1.65 16 14 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 16 C -0.13 -1.40 5.49 -26.76 -0.15 -1.55 16 17 C 0.16 1.94 1.90 -67.96 -0.13 1.81 16 18 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 19 N -0.71 -7.82 4.26 -54.94 -0.23 -8.05 16 20 C 0.56 7.28 7.74 -12.57 -0.10 7.18 16 21 O -0.50 -8.61 15.94 5.26 0.08 -8.52 16 22 C -0.10 -1.02 6.06 -102.71 -0.62 -1.64 16 23 C -0.02 -0.10 9.63 -38.74 -0.37 -0.47 16 24 C -0.14 -0.50 9.92 -40.09 -0.40 -0.90 16 25 C 0.13 0.68 11.15 -16.90 -0.19 0.49 16 26 N -0.31 -3.30 3.94 -10.99 -0.04 -3.34 16 27 N -0.11 -1.43 13.99 60.35 0.84 -0.59 16 28 N -0.01 -0.15 13.36 60.35 0.81 0.66 16 29 N -0.29 -4.72 11.75 32.20 0.38 -4.34 16 30 C 0.27 3.59 7.85 -154.51 -1.21 2.38 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.38 9.39 6.85 -40.82 -0.28 9.11 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.30 7.30 -51.93 -0.38 -0.08 16 35 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.40 3.37 6.50 -40.82 -0.27 3.11 16 44 H 0.17 0.53 6.49 -52.49 -0.34 0.18 16 45 H 0.18 -0.06 8.06 -52.49 -0.42 -0.49 16 46 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -35.99 379.44 -7.34 -43.34 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.23 Total: 5.06 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.05 Total: -2.95 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 2.16 Total: -59.30 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.99 -7.34 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.471 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds