Wall clock time and date at job start Wed Apr 1 2020 04:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00308 * 2 1 4 4 H 1.48495 * 109.47365 * 270.00044 * 3 2 1 5 5 H 1.48497 * 109.46842 * 30.00027 * 3 2 1 6 6 H 1.48503 * 109.47169 * 149.99836 * 3 2 1 7 7 C 1.38809 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47175 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47111 * 54.99974 * 11 10 9 13 13 C 1.53001 * 109.47340 * 295.00531 * 11 10 9 14 14 C 1.52998 * 109.47636 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47322 * 59.99238 * 14 13 11 16 16 C 1.52996 * 109.47099 * 300.00769 * 15 14 13 17 17 C 1.52997 * 109.47463 * 174.99973 * 11 10 9 18 18 H 1.09003 * 109.46957 * 59.99906 * 17 11 10 19 19 N 1.46499 * 109.47235 * 300.00217 * 17 11 10 20 20 C 1.34780 * 119.99968 * 154.99582 * 19 17 11 21 21 O 1.21616 * 119.99941 * 359.97438 * 20 19 17 22 22 C 1.47315 * 119.99566 * 180.02562 * 20 19 17 23 23 C 1.39004 * 120.90779 * 0.02562 * 22 20 19 24 24 C 1.39723 * 119.29012 * 179.97438 * 23 22 20 25 25 C 1.35253 * 121.08087 * 0.02562 * 24 23 22 26 26 N 1.35715 * 121.57449 * 359.97438 * 25 24 23 27 27 N 1.40202 * 134.08964 * 180.02562 * 26 25 24 28 28 N 1.29024 * 106.96411 * 179.97438 * 27 26 25 29 29 N 1.28590 * 110.78339 * 359.75003 * 28 27 26 30 30 C 1.32040 * 110.21591 * 0.41814 * 29 28 27 31 31 H 0.97000 * 119.99607 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99589 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46926 * 60.00441 * 10 9 7 34 34 H 1.08997 * 109.46999 * 300.00288 * 10 9 7 35 35 H 1.08994 * 109.47694 * 59.99617 * 13 11 10 36 36 H 1.09003 * 109.46564 * 299.99778 * 13 11 10 37 37 H 1.08998 * 109.46822 * 299.99917 * 14 13 11 38 38 H 1.08997 * 109.47737 * 179.97438 * 14 13 11 39 39 H 1.08995 * 109.47365 * 180.02562 * 15 14 13 40 40 H 1.08998 * 109.46619 * 60.00554 * 15 14 13 41 41 H 1.09003 * 109.46827 * 299.99693 * 16 15 14 42 42 H 1.09007 * 109.47453 * 180.02562 * 16 15 14 43 43 H 0.97002 * 119.99830 * 334.99559 * 19 17 11 44 44 H 1.07994 * 120.35331 * 359.96236 * 23 22 20 45 45 H 1.07998 * 119.45531 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.21304 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3799 -4.7126 -0.8433 13 6 0.2683 -4.8114 1.3058 14 6 -0.7255 -5.9746 1.3055 15 6 0.0357 -7.2959 1.1800 16 6 0.8311 -7.3041 -0.1269 17 6 1.8245 -6.1411 -0.1269 18 1 2.5083 -6.2482 0.7152 19 7 2.5860 -6.1491 -1.3784 20 6 3.6856 -6.9199 -1.4932 21 8 4.0460 -7.6085 -0.5577 22 6 4.4517 -6.9274 -2.7515 23 6 4.0577 -6.1466 -3.8319 24 6 4.8096 -6.1792 -5.0092 25 6 5.9111 -6.9571 -5.1128 26 7 6.3313 -7.7348 -4.0830 27 7 7.4046 -8.6187 -3.9028 28 7 7.3099 -9.0865 -2.7041 29 7 6.2902 -8.5886 -2.0992 30 6 5.6476 -7.7561 -2.8977 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6845 -3.7146 0.8895 34 1 2.6846 -3.7146 -0.8905 35 1 -0.2737 -3.8701 1.3954 36 1 0.9521 -4.9185 2.1479 37 1 -1.4093 -5.8680 0.4634 38 1 -1.2919 -5.9690 2.2368 39 1 -0.6723 -8.1246 1.1794 40 1 0.7195 -7.4025 2.0221 41 1 0.1472 -7.1975 -0.9690 42 1 1.3731 -8.2456 -0.2166 43 1 2.2988 -5.5996 -2.1244 44 1 3.1798 -5.5216 -3.7622 45 1 4.5057 -5.5739 -5.8504 46 1 6.4702 -6.9589 -6.0368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733071705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:34 Heat of formation + Delta-G solvation = 90.412283 kcal Electronic energy + Delta-G solvation = -29944.311118 eV Core-core repulsion = 25870.874706 eV Total energy + Delta-G solvation = -4073.436412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.50446 -41.36665 -39.79938 -39.08797 -36.38327 -35.50640 -34.90525 -33.65342 -33.12151 -31.95191 -31.18023 -30.17801 -27.03487 -26.42555 -25.38611 -24.70846 -24.68348 -23.19044 -21.97944 -21.74299 -20.93564 -19.84801 -19.27803 -18.63061 -18.46701 -18.04900 -17.10691 -16.69825 -16.60289 -16.05922 -15.99174 -15.49067 -15.36955 -15.11779 -14.89564 -14.77911 -14.56074 -14.20830 -14.05171 -13.94630 -13.69223 -13.63525 -13.33578 -13.23988 -12.92933 -12.73145 -12.64047 -12.57196 -12.18648 -12.16736 -12.07730 -11.88734 -11.82116 -11.52177 -11.33477 -11.31974 -11.13958 -10.99815 -10.84353 -10.10143 -9.71610 -8.93719 -7.91650 -5.18853 -1.07884 -0.60867 0.56569 0.94667 1.45578 1.49512 1.51386 1.59024 1.91892 2.27943 2.47052 2.58428 2.83320 3.36342 3.42215 3.55239 3.61445 3.70700 3.81940 3.96809 4.00576 4.13609 4.18644 4.28782 4.33572 4.43787 4.48857 4.53738 4.55322 4.59764 4.61302 4.73545 4.88820 4.92637 4.97205 5.08190 5.17247 5.18374 5.27331 5.33211 5.34704 5.35220 5.46515 5.50117 5.53850 5.63927 6.31054 6.46371 7.14094 7.15477 7.38786 8.14492 8.39108 9.31365 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.003136 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.859497 B = 8925.711743 C =11104.713535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.158 3.842 11 C -0.083 4.083 12 H 0.090 0.910 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.118 4.118 17 C 0.164 3.836 18 H 0.064 0.936 19 N -0.699 5.699 20 C 0.561 3.439 21 O -0.557 6.557 22 C -0.136 4.136 23 C 0.020 3.980 24 C -0.115 4.115 25 C 0.121 3.879 26 N -0.306 5.306 27 N -0.121 5.121 28 N -0.039 5.039 29 N -0.344 5.344 30 C 0.254 3.746 31 H 0.251 0.749 32 H 0.377 0.623 33 H -0.001 1.001 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.415 0.585 44 H 0.201 0.799 45 H 0.235 0.765 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -13.856 -15.069 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.032 3.968 11 C -0.102 4.102 12 H 0.109 0.891 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.157 4.157 17 C 0.059 3.941 18 H 0.082 0.918 19 N -0.352 5.352 20 C 0.347 3.653 21 O -0.435 6.435 22 C -0.146 4.146 23 C -0.005 4.005 24 C -0.138 4.138 25 C -0.005 4.005 26 N -0.086 5.086 27 N -0.105 5.105 28 N -0.032 5.032 29 N -0.202 5.202 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.210 0.790 33 H 0.017 0.983 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.218 0.782 45 H 0.251 0.749 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.408 -15.340 -13.970 21.026 hybrid contribution -0.177 1.743 -0.049 1.752 sum 3.231 -13.597 -14.019 19.796 Atomic orbital electron populations 1.69785 1.06324 1.25953 1.59452 1.25421 0.96283 1.00598 1.03814 0.85262 0.77547 0.80090 0.77581 1.20927 1.22489 1.20231 1.19543 0.91259 0.85495 1.41143 0.91268 1.42498 1.05649 1.00704 1.89241 1.20793 0.93665 0.84983 0.97400 1.21428 0.96856 0.92070 0.99861 0.89145 1.21443 0.97933 0.98946 0.96152 1.21533 0.97412 0.93405 1.02673 1.21478 0.98875 0.97889 0.96796 1.21824 0.97493 0.96940 0.99445 1.20858 0.92431 0.94849 0.85972 0.91766 1.45757 1.26470 1.45380 1.17557 1.17745 0.80711 0.80186 0.86615 1.90888 1.69044 1.42734 1.40817 1.20194 0.94167 1.02178 0.98044 1.22710 0.98424 0.90119 0.89272 1.21810 0.92289 0.99090 1.00562 1.22954 0.97233 0.88605 0.91671 1.49129 1.18158 1.28883 1.12412 1.82605 1.05868 1.08324 1.13664 1.77975 1.10902 1.15028 0.99266 1.75128 1.05049 1.14243 1.25820 1.23809 0.95736 0.96926 0.83798 0.94024 0.78980 0.98312 0.95002 0.92844 0.93180 0.90870 0.91333 0.90063 0.92757 0.89786 0.92622 0.74678 0.78225 0.74852 0.75651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.85 13.06 21.65 0.28 -55.57 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.24 -12.80 9.99 84.03 0.84 -11.96 16 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.74 -34.25 5.33 -343.46 -1.83 -36.08 16 10 C 0.16 5.70 5.57 86.38 0.48 6.18 16 11 C -0.08 -2.24 1.80 -10.80 -0.02 -2.26 16 12 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -3.01 5.08 30.59 0.16 -2.86 16 14 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 15 C -0.11 -2.24 5.92 30.59 0.18 -2.05 16 16 C -0.12 -2.46 5.49 30.58 0.17 -2.29 16 17 C 0.16 4.00 1.90 44.97 0.09 4.09 16 18 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 19 N -0.70 -14.39 4.26 -445.99 -1.90 -16.29 16 20 C 0.56 14.61 7.74 86.63 0.67 15.28 16 21 O -0.56 -20.31 15.94 -4.08 -0.07 -20.38 16 22 C -0.14 -2.71 6.06 -18.63 -0.11 -2.83 16 23 C 0.02 0.14 9.63 22.81 0.22 0.36 16 24 C -0.12 -0.10 9.92 21.94 0.22 0.11 16 25 C 0.12 0.78 11.15 83.40 0.93 1.71 16 26 N -0.31 -6.16 3.94 -188.68 -0.74 -6.90 16 27 N -0.12 -3.27 13.99 37.02 0.52 -2.75 16 28 N -0.04 -1.29 13.36 37.02 0.49 -0.80 16 29 N -0.34 -12.06 11.75 -52.04 -0.61 -12.67 16 30 C 0.25 6.78 7.85 135.76 1.07 7.85 16 31 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.38 18.46 6.85 -92.71 -0.63 17.83 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.03 1.07 7.30 -2.39 -0.02 1.05 16 35 H 0.05 1.80 7.18 -2.39 -0.02 1.79 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.41 5.65 6.50 -92.71 -0.60 5.05 16 44 H 0.20 0.02 6.49 -2.91 -0.02 0.00 16 45 H 0.24 -2.29 8.06 -2.91 -0.02 -2.32 16 46 H 0.23 -0.53 8.06 -2.91 -0.02 -0.55 16 Total: -1.00 -86.07 379.44 3.50 -82.57 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.20 Total: 16.85 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.53 Total: 5.81 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -3.79 Total: -131.06 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.07 Total: -20.38 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -86.07 3.50 -82.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.984 kcal (2) G-P(sol) polarization free energy of solvation -86.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds