Wall clock time and date at job start Wed Apr 1 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47015 * 2 1 4 4 F 1.39899 * 109.47002 * 240.00286 * 2 1 3 5 5 C 1.52998 * 109.47176 * 120.00025 * 2 1 3 6 6 C 1.53007 * 109.46931 * 184.99654 * 5 2 1 7 7 N 1.46900 * 109.47126 * 180.02562 * 6 5 2 8 8 C 1.48634 * 111.00011 * 307.44149 * 7 6 5 9 9 C 1.55162 * 103.36587 * 200.84181 * 8 7 6 10 10 C 1.53604 * 102.66492 * 36.56151 * 9 8 7 11 11 C 1.53287 * 111.06370 * 99.90032 * 10 9 8 12 12 C 1.54652 * 104.58273 * 120.37763 * 11 10 9 13 13 N 1.48241 * 104.65535 * 23.69727 * 12 11 10 14 14 C 1.34773 * 127.75500 * 141.04034 * 13 12 11 15 15 O 1.21278 * 119.99723 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00299 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99786 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99734 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00362 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47458 * 90.00189 * 22 20 18 24 24 H 1.48500 * 109.47044 * 210.00108 * 22 20 18 25 25 H 1.48503 * 109.47002 * 329.99817 * 22 20 18 26 26 C 1.48383 * 104.48201 * 321.03923 * 13 12 11 27 27 C 1.48174 * 111.00170 * 190.00499 * 7 6 5 28 28 H 1.09003 * 109.46755 * 299.99447 * 1 2 3 29 29 H 1.08993 * 109.47063 * 59.99472 * 1 2 3 30 30 H 1.08996 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46934 * 65.00473 * 5 2 1 32 32 H 1.08992 * 109.47708 * 305.00170 * 5 2 1 33 33 H 1.09000 * 109.46374 * 60.00667 * 6 5 2 34 34 H 1.08995 * 109.47205 * 299.99984 * 6 5 2 35 35 H 1.09001 * 110.64352 * 319.31560 * 8 7 6 36 36 H 1.09007 * 110.63912 * 82.37243 * 8 7 6 37 37 H 1.09001 * 110.77105 * 278.26532 * 9 8 7 38 38 H 1.09001 * 110.77038 * 154.85322 * 9 8 7 39 39 H 1.09004 * 110.41389 * 239.14848 * 11 10 9 40 40 H 1.08994 * 110.41915 * 1.59649 * 11 10 9 41 41 H 1.08993 * 110.39967 * 142.49024 * 12 11 10 42 42 H 1.08995 * 110.39605 * 264.79101 * 12 11 10 43 43 H 1.09000 * 109.47348 * 300.00615 * 16 14 13 44 44 H 1.08995 * 109.47130 * 59.99999 * 16 14 13 45 45 H 0.97002 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.44673 * 279.92882 * 26 13 12 47 47 H 1.09003 * 110.44862 * 157.38578 * 26 13 12 48 48 H 1.09006 * 110.02154 * 26.38679 * 27 7 6 49 49 H 1.09005 * 110.01678 * 264.99223 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5650 -0.6133 1.3136 7 7 4.0547 -1.3063 2.5127 8 6 3.3496 -0.8272 3.7302 9 6 4.3139 -1.2191 4.8808 10 6 5.6972 -0.9853 4.2553 11 6 6.2857 0.3565 4.7056 12 6 7.6088 -0.0167 5.4140 13 7 7.9820 -1.3326 4.8424 14 6 9.2139 -1.7712 4.5163 15 8 9.3590 -2.8829 4.0537 16 6 10.4110 -0.8799 4.7251 17 16 11.9086 -1.7468 4.1946 18 6 13.1160 -0.5106 4.5391 19 1 12.8132 0.4387 4.9558 20 6 14.4564 -0.7572 4.2761 21 7 14.8255 -1.9144 3.7688 22 14 15.7364 0.5531 4.6421 23 1 16.2343 0.3846 6.0309 24 1 16.8686 0.4184 3.6906 25 1 15.1240 1.8980 4.4955 26 6 6.6945 -2.0583 4.7102 27 6 5.4915 -1.0239 2.7396 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7716 1.2055 32 1 1.6055 -0.2619 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0728 0.4259 35 1 3.2128 0.2536 3.6947 36 1 2.3908 -1.3333 3.8431 37 1 4.1849 -2.2666 5.1534 38 1 4.1665 -0.5725 5.7458 39 1 6.4828 0.9937 3.8434 40 1 5.6096 0.8543 5.4006 41 1 8.3783 0.7239 5.1965 42 1 7.4539 -0.0980 6.4898 43 1 10.2921 0.0314 4.1391 44 1 10.4936 -0.6242 5.7815 45 1 15.7622 -2.0866 3.5846 46 1 6.3926 -2.4763 5.6707 47 1 6.7761 -2.8451 3.9602 48 1 5.7562 -0.0610 2.3025 49 1 6.1009 -1.8137 2.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733296389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:13 Heat of formation + Delta-G solvation = -84.802310 kcal Electronic energy + Delta-G solvation = -27745.360592 eV Core-core repulsion = 23747.557544 eV Total energy + Delta-G solvation = -3997.803048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.98363 -40.72341 -38.77535 -36.87686 -34.67131 -32.44775 -32.41311 -30.37030 -29.74288 -29.25587 -28.35724 -25.57669 -25.00787 -23.80707 -23.09912 -21.97288 -20.94042 -19.48828 -19.24716 -17.65465 -17.09695 -16.64900 -16.45675 -16.20209 -15.61357 -15.28757 -15.09564 -15.00195 -14.80325 -14.60667 -14.25013 -13.89039 -13.84052 -13.65541 -13.25582 -12.91629 -12.87697 -12.71370 -12.64801 -12.48169 -12.20865 -12.05163 -11.95824 -11.86735 -11.62289 -11.36938 -11.28999 -11.13075 -11.06516 -11.02773 -10.96158 -10.83185 -10.76261 -10.69758 -9.81145 -9.38818 -9.06554 -8.73702 -8.55963 -8.22771 -6.49857 -6.21346 -3.92037 2.90434 3.07412 3.22188 3.25831 3.30207 3.50979 3.61381 4.04403 4.16656 4.20068 4.20992 4.23493 4.30638 4.35149 4.47014 4.69524 4.76332 4.85605 4.86547 4.97380 5.02422 5.09312 5.09954 5.13689 5.17039 5.28651 5.34933 5.40132 5.41904 5.47595 5.49993 5.51914 5.55798 5.64823 5.66203 5.69209 5.71391 5.77089 5.83190 5.90422 5.91312 5.97582 6.13410 6.35544 6.54739 6.69437 7.59482 7.73633 8.35262 8.57617 9.23737 10.86058 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.001914 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.064896 B =14625.282166 C =15222.906416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.081 0.919 4 F -0.213 7.213 5 C -0.146 4.146 6 C 0.045 3.955 7 N -0.515 5.515 8 C 0.033 3.967 9 C -0.109 4.109 10 C -0.083 4.083 11 C -0.123 4.123 12 C 0.101 3.899 13 N -0.631 5.631 14 C 0.554 3.446 15 O -0.515 6.515 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.122 3.878 27 C 0.051 3.949 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.050 0.950 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.714 7.791 0.131 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.099 0.901 4 F -0.194 7.194 5 C -0.184 4.184 6 C -0.083 4.083 7 N -0.239 5.239 8 C -0.095 4.095 9 C -0.148 4.148 10 C -0.085 4.085 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.369 5.369 14 C 0.343 3.657 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.001 4.001 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.281 5.399 -0.787 30.768 hybrid contribution 0.809 3.098 0.817 3.304 sum -29.472 8.497 0.029 30.672 Atomic orbital electron populations 1.22370 0.94223 1.03721 1.03405 1.21555 0.94841 0.96163 0.82293 0.90130 1.92835 1.90249 1.83336 1.52968 1.22283 0.95954 1.02817 0.97350 1.22310 0.94674 0.96709 0.94656 1.64935 1.03226 1.53744 1.02021 1.23305 0.98128 0.98084 0.89936 1.22542 0.92414 1.02675 0.97135 1.21641 0.95570 0.95933 0.95351 1.22687 0.96596 0.95945 1.00939 1.22393 0.96495 0.85733 0.97599 1.49104 1.05810 1.16789 1.65150 1.19980 0.81931 0.87331 0.76503 1.90715 1.84333 1.20585 1.43283 1.23500 0.98709 1.02501 1.04979 1.85417 0.92857 1.21969 1.83081 1.22858 0.93569 1.02480 1.49462 0.90961 1.24992 0.97751 0.96218 0.94612 1.70020 1.17426 1.22017 1.40758 0.86170 0.80158 0.80871 0.78303 1.20262 1.20733 1.19719 1.22252 0.81814 0.94548 1.01513 1.22994 0.89276 1.01117 0.94295 0.90734 0.91393 0.91267 0.89689 0.90080 0.94545 0.89919 0.93744 0.89983 0.90142 0.90478 0.90807 0.90149 0.89992 0.91125 0.89396 0.89356 0.92172 0.91222 0.89490 0.93208 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 9.65 37.16 0.36 -0.44 16 2 C 0.09 0.54 3.96 -26.73 -0.11 0.43 16 3 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 4 F -0.21 -2.01 16.76 2.25 0.04 -1.98 16 5 C -0.15 -0.89 4.65 -26.73 -0.12 -1.02 16 6 C 0.04 0.36 4.94 -3.82 -0.02 0.34 16 7 N -0.52 -4.60 5.41 -230.60 -1.25 -5.84 16 8 C 0.03 0.22 5.11 -1.72 -0.01 0.21 16 9 C -0.11 -0.76 6.06 -25.27 -0.15 -0.91 16 10 C -0.08 -0.75 0.89 -153.84 -0.14 -0.89 16 11 C -0.12 -1.00 6.33 -25.71 -0.16 -1.17 16 12 C 0.10 1.05 6.93 -2.21 -0.02 1.04 16 13 N -0.63 -9.15 3.33 -169.48 -0.56 -9.72 16 14 C 0.55 10.88 7.93 -10.99 -0.09 10.79 16 15 O -0.52 -12.21 16.14 5.56 0.09 -12.12 16 16 C -0.15 -3.04 5.14 36.01 0.18 -2.86 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.12 1.46 6.04 -2.80 -0.02 1.45 16 27 C 0.05 0.51 6.06 -3.12 -0.02 0.49 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.38 6.80 -51.93 -0.35 0.02 16 33 H 0.04 0.28 7.82 -51.93 -0.41 -0.13 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.04 0.27 7.98 -51.93 -0.41 -0.14 16 36 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 37 H 0.08 0.58 7.82 -51.93 -0.41 0.18 16 38 H 0.08 0.42 7.37 -51.93 -0.38 0.04 16 39 H 0.07 0.62 7.19 -51.93 -0.37 0.25 16 40 H 0.08 0.49 7.29 -51.93 -0.38 0.11 16 41 H 0.08 0.86 7.31 -51.93 -0.38 0.48 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.70 7.95 -51.92 -0.41 1.28 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.07 0.75 7.81 -51.92 -0.41 0.35 16 47 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 48 H 0.05 0.50 6.61 -51.93 -0.34 0.16 16 49 H 0.09 1.06 7.30 -51.93 -0.38 0.68 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -34.81 400.11 -10.58 -45.39 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.32 Total: -3.23 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.11 Total: -5.57 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -1.08 Total: -41.12 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.81 -10.58 -45.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733296389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.408 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds