Wall clock time and date at job start Wed Apr 1 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47015 * 2 1 4 4 F 1.39899 * 109.47002 * 240.00286 * 2 1 3 5 5 C 1.52998 * 109.47176 * 120.00025 * 2 1 3 6 6 C 1.53007 * 109.46931 * 184.99654 * 5 2 1 7 7 N 1.46900 * 109.47126 * 180.02562 * 6 5 2 8 8 C 1.48634 * 111.00011 * 307.44149 * 7 6 5 9 9 C 1.55162 * 103.36587 * 200.84181 * 8 7 6 10 10 C 1.53604 * 102.66492 * 36.56151 * 9 8 7 11 11 C 1.53287 * 111.06370 * 99.90032 * 10 9 8 12 12 C 1.54652 * 104.58273 * 120.37763 * 11 10 9 13 13 N 1.48241 * 104.65535 * 23.69727 * 12 11 10 14 14 C 1.34773 * 127.75500 * 141.04034 * 13 12 11 15 15 O 1.21278 * 119.99723 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00299 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99786 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99734 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00362 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47458 * 90.00189 * 22 20 18 24 24 H 1.48500 * 109.47044 * 210.00108 * 22 20 18 25 25 H 1.48503 * 109.47002 * 329.99817 * 22 20 18 26 26 C 1.48383 * 104.48201 * 321.03923 * 13 12 11 27 27 C 1.48174 * 111.00170 * 190.00499 * 7 6 5 28 28 H 1.09003 * 109.46755 * 299.99447 * 1 2 3 29 29 H 1.08993 * 109.47063 * 59.99472 * 1 2 3 30 30 H 1.08996 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46934 * 65.00473 * 5 2 1 32 32 H 1.08992 * 109.47708 * 305.00170 * 5 2 1 33 33 H 1.09000 * 109.46374 * 60.00667 * 6 5 2 34 34 H 1.08995 * 109.47205 * 299.99984 * 6 5 2 35 35 H 1.09001 * 110.64352 * 319.31560 * 8 7 6 36 36 H 1.09007 * 110.63912 * 82.37243 * 8 7 6 37 37 H 1.09001 * 110.77105 * 278.26532 * 9 8 7 38 38 H 1.09001 * 110.77038 * 154.85322 * 9 8 7 39 39 H 1.09004 * 110.41389 * 239.14848 * 11 10 9 40 40 H 1.08994 * 110.41915 * 1.59649 * 11 10 9 41 41 H 1.08993 * 110.39967 * 142.49024 * 12 11 10 42 42 H 1.08995 * 110.39605 * 264.79101 * 12 11 10 43 43 H 1.09000 * 109.47348 * 300.00615 * 16 14 13 44 44 H 1.08995 * 109.47130 * 59.99999 * 16 14 13 45 45 H 0.97002 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.44673 * 279.92882 * 26 13 12 47 47 H 1.09003 * 110.44862 * 157.38578 * 26 13 12 48 48 H 1.09006 * 110.02154 * 26.38679 * 27 7 6 49 49 H 1.09005 * 110.01678 * 264.99223 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5650 -0.6133 1.3136 7 7 4.0547 -1.3063 2.5127 8 6 3.3496 -0.8272 3.7302 9 6 4.3139 -1.2191 4.8808 10 6 5.6972 -0.9853 4.2553 11 6 6.2857 0.3565 4.7056 12 6 7.6088 -0.0167 5.4140 13 7 7.9820 -1.3326 4.8424 14 6 9.2139 -1.7712 4.5163 15 8 9.3590 -2.8829 4.0537 16 6 10.4110 -0.8799 4.7251 17 16 11.9086 -1.7468 4.1946 18 6 13.1160 -0.5106 4.5391 19 1 12.8132 0.4387 4.9558 20 6 14.4564 -0.7572 4.2761 21 7 14.8255 -1.9144 3.7688 22 14 15.7364 0.5531 4.6421 23 1 16.2343 0.3846 6.0309 24 1 16.8686 0.4184 3.6906 25 1 15.1240 1.8980 4.4955 26 6 6.6945 -2.0583 4.7102 27 6 5.4915 -1.0239 2.7396 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7716 1.2055 32 1 1.6055 -0.2619 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0728 0.4259 35 1 3.2128 0.2536 3.6947 36 1 2.3908 -1.3333 3.8431 37 1 4.1849 -2.2666 5.1534 38 1 4.1665 -0.5725 5.7458 39 1 6.4828 0.9937 3.8434 40 1 5.6096 0.8543 5.4006 41 1 8.3783 0.7239 5.1965 42 1 7.4539 -0.0980 6.4898 43 1 10.2921 0.0314 4.1391 44 1 10.4936 -0.6242 5.7815 45 1 15.7622 -2.0866 3.5846 46 1 6.3926 -2.4763 5.6707 47 1 6.7761 -2.8451 3.9602 48 1 5.7562 -0.0610 2.3025 49 1 6.1009 -1.8137 2.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733296389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:12 Heat of formation + Delta-G solvation = -107.884861 kcal Electronic energy + Delta-G solvation = -27746.361527 eV Core-core repulsion = 23747.557544 eV Total energy + Delta-G solvation = -3998.803983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.60059 -41.62126 -40.01374 -37.88319 -35.35823 -34.60295 -33.25738 -31.38969 -30.76452 -30.01920 -29.21650 -27.70627 -26.03054 -24.52244 -23.82513 -22.50513 -21.57890 -20.74487 -20.23663 -19.47579 -18.08264 -17.65355 -17.25810 -16.96130 -16.89731 -16.56442 -16.43858 -15.92422 -15.81644 -15.67474 -15.41932 -14.98214 -14.81238 -14.68345 -14.41580 -13.97541 -13.72226 -13.58504 -13.42564 -13.22425 -13.18523 -13.06576 -13.03972 -12.89969 -12.78819 -12.63177 -12.50070 -12.39031 -12.00077 -11.91649 -11.78685 -11.64889 -11.61179 -11.44849 -11.35241 -11.15722 -10.97300 -10.30242 -9.78766 -9.37721 -8.70371 -8.36038 -6.15367 1.21875 1.41806 1.43547 1.54621 1.55044 2.06221 2.25758 2.88996 2.97996 3.19597 3.37411 3.43208 3.55773 3.71650 3.79558 3.84390 3.87644 3.99375 4.02889 4.17930 4.22826 4.28359 4.29974 4.38003 4.40928 4.42827 4.54823 4.56035 4.61055 4.65354 4.75199 4.78753 4.84322 4.87892 4.90833 4.99515 5.01944 5.09178 5.11137 5.16837 5.21075 5.26434 5.29459 5.39298 5.39859 5.88879 6.07150 6.18087 6.42775 7.04693 7.09642 8.73321 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.001914 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.064896 B =14625.282166 C =15222.906416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 H 0.094 0.906 4 F -0.237 7.237 5 C -0.136 4.136 6 C 0.046 3.954 7 N -0.531 5.531 8 C 0.035 3.965 9 C -0.103 4.103 10 C -0.075 4.075 11 C -0.112 4.112 12 C 0.091 3.909 13 N -0.625 5.625 14 C 0.550 3.450 15 O -0.571 6.571 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.118 3.882 27 C 0.051 3.949 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.073 11.257 2.374 35.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.043 3.957 3 H 0.112 0.888 4 F -0.218 7.218 5 C -0.174 4.174 6 C -0.083 4.083 7 N -0.256 5.256 8 C -0.092 4.092 9 C -0.141 4.141 10 C -0.076 4.076 11 C -0.150 4.150 12 C -0.030 4.030 13 N -0.359 5.359 14 C 0.338 3.662 15 O -0.450 6.450 16 C -0.269 4.269 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.004 4.004 27 C -0.077 4.077 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -32.711 8.906 1.479 33.934 hybrid contribution 1.387 2.001 0.121 2.438 sum -31.323 10.908 1.600 33.206 Atomic orbital electron populations 1.22355 0.92722 1.03755 1.04498 1.21842 0.96085 0.96532 0.81246 0.88783 1.92790 1.90680 1.83909 1.54435 1.22214 0.94378 1.02404 0.98374 1.22274 0.95948 0.96635 0.93416 1.64873 1.02614 1.54692 1.03397 1.23400 0.98236 0.99233 0.88352 1.22571 0.90352 1.03213 0.97961 1.21577 0.96112 0.95411 0.94537 1.22695 0.95697 0.95167 1.01475 1.22805 0.97771 0.83297 0.99150 1.49061 1.04864 1.18793 1.63208 1.19746 0.83293 0.86461 0.76670 1.90689 1.85394 1.22704 1.46214 1.23282 0.95617 1.02061 1.05930 1.85633 0.97569 1.25160 1.84229 1.23190 0.94013 1.02613 1.49569 0.89838 1.26164 1.00274 0.98757 0.94004 1.70192 1.18076 1.24511 1.42005 0.84927 0.76666 0.77837 0.78374 1.19175 1.20288 1.18093 1.22468 0.81340 0.94944 1.01696 1.22872 0.89974 0.99647 0.95158 0.88599 0.91363 0.91770 0.90869 0.87661 0.93791 0.92592 0.92033 0.88708 0.90599 0.87590 0.90919 0.86423 0.89852 0.88529 0.87711 0.87445 0.91961 0.89346 0.92627 0.93237 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.65 71.98 0.69 -0.53 16 2 C 0.08 0.86 3.96 30.60 0.12 0.98 16 3 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 4 F -0.24 -4.54 16.76 44.97 0.75 -3.79 16 5 C -0.14 -1.44 4.65 30.60 0.14 -1.29 16 6 C 0.05 0.70 4.94 86.31 0.43 1.13 16 7 N -0.53 -8.96 5.41 -883.49 -4.78 -13.74 16 8 C 0.03 0.35 5.11 86.71 0.44 0.79 16 9 C -0.10 -1.04 6.06 31.54 0.19 -0.85 16 10 C -0.07 -1.19 0.89 -51.75 -0.05 -1.24 16 11 C -0.11 -1.39 6.33 31.25 0.20 -1.19 16 12 C 0.09 1.61 6.93 86.61 0.60 2.21 16 13 N -0.62 -17.67 3.33 -808.51 -2.69 -20.36 16 14 C 0.55 22.11 7.93 87.66 0.70 22.81 16 15 O -0.57 -28.69 16.14 -3.02 -0.05 -28.74 16 16 C -0.12 -4.92 5.14 71.24 0.37 -4.55 16 17 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 18 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 22 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 C 0.12 2.78 6.04 86.15 0.52 3.30 16 27 C 0.05 1.03 6.06 86.06 0.52 1.55 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 32 H 0.11 0.61 6.80 -2.39 -0.02 0.59 16 33 H 0.04 0.60 7.82 -2.39 -0.02 0.58 16 34 H 0.06 1.13 7.93 -2.39 -0.02 1.12 16 35 H 0.06 0.44 7.98 -2.39 -0.02 0.43 16 36 H 0.09 0.75 7.70 -2.38 -0.02 0.73 16 37 H 0.08 0.88 7.82 -2.39 -0.02 0.86 16 38 H 0.11 0.53 7.37 -2.39 -0.02 0.51 16 39 H 0.07 0.97 7.19 -2.39 -0.02 0.96 16 40 H 0.12 0.69 7.29 -2.39 -0.02 0.67 16 41 H 0.08 1.48 7.31 -2.39 -0.02 1.47 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 3.98 7.95 -2.40 -0.02 3.96 16 44 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.09 1.77 7.81 -2.38 -0.02 1.75 16 47 H 0.06 1.67 7.16 -2.39 -0.02 1.65 16 48 H 0.05 0.97 6.61 -2.38 -0.02 0.95 16 49 H 0.05 1.33 7.30 -2.38 -0.02 1.32 16 Total: -1.00 -81.49 400.11 1.30 -80.19 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.92 Total: 13.61 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.99 Total: -6.67 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -7.18 Total: -90.55 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.75 Total: -3.79 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -81.49 1.30 -80.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733296389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.691 kcal (2) G-P(sol) polarization free energy of solvation -81.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds