Wall clock time and date at job start Wed Apr 1 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.46998 * 30.00672 * 3 2 1 6 6 H 1.48501 * 109.46948 * 150.00172 * 3 2 1 7 7 C 1.38813 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99661 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99982 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46788 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47110 * 294.99538 * 11 10 9 13 13 N 1.46498 * 109.47289 * 54.99818 * 11 10 9 14 14 C 1.34778 * 119.99762 * 244.79280 * 13 11 10 15 15 O 1.21624 * 120.00269 * 354.99514 * 14 13 11 16 16 C 1.47315 * 119.99736 * 174.99365 * 14 13 11 17 17 C 1.39002 * 120.90638 * 359.97438 * 16 14 13 18 18 C 1.39719 * 119.28794 * 180.02562 * 17 16 14 19 19 C 1.35247 * 121.08371 * 359.97438 * 18 17 16 20 20 N 1.35717 * 121.57501 * 0.02562 * 19 18 17 21 21 N 1.40207 * 134.08977 * 180.02562 * 20 19 18 22 22 N 1.29018 * 106.95900 * 179.97438 * 21 20 19 23 23 N 1.28587 * 110.78921 * 359.76979 * 22 21 20 24 24 C 1.32049 * 110.21400 * 0.38360 * 23 22 21 25 25 C 1.53003 * 109.46877 * 174.99664 * 11 10 9 26 26 C 1.54261 * 110.03573 * 297.05058 * 25 11 10 27 27 C 1.54889 * 104.19730 * 217.10930 * 26 25 11 28 28 C 1.54888 * 102.74979 * 37.93852 * 27 26 25 29 29 C 1.53877 * 110.03134 * 179.87994 * 25 11 10 30 30 H 0.96995 * 120.00125 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99496 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.47582 * 59.99553 * 10 9 7 33 33 H 1.09004 * 109.46901 * 299.99186 * 10 9 7 34 34 H 0.96992 * 120.00366 * 64.79412 * 13 11 10 35 35 H 1.07993 * 120.35763 * 0.04479 * 17 16 14 36 36 H 1.08007 * 119.45824 * 179.97438 * 18 17 16 37 37 H 1.08007 * 119.21507 * 179.97438 * 19 18 17 38 38 H 1.09003 * 110.01734 * 58.49539 * 25 11 10 39 39 H 1.09002 * 110.48284 * 335.78256 * 26 25 11 40 40 H 1.08992 * 110.48979 * 98.42306 * 26 25 11 41 41 H 1.09001 * 110.75325 * 279.62582 * 27 26 25 42 42 H 1.08996 * 110.75763 * 156.25405 * 27 26 25 43 43 H 1.09003 * 110.48851 * 203.38443 * 28 27 26 44 44 H 1.08998 * 110.59739 * 80.79408 * 28 27 26 45 45 H 1.09002 * 110.03230 * 238.57284 * 29 25 11 46 46 H 1.09005 * 110.03256 * 359.95297 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8935 -1.6983 -0.9342 13 7 5.9526 -1.3225 1.1284 14 6 6.4267 -0.0806 0.9063 15 8 6.6615 0.2868 -0.2291 16 6 6.6605 0.8320 2.0389 17 6 6.3982 0.4319 3.3440 18 6 6.6317 1.3251 4.3927 19 6 7.1082 2.5688 4.1576 20 7 7.3780 3.0004 2.8995 21 7 7.8657 4.2007 2.3635 22 7 7.9228 4.0456 1.0839 23 7 7.5265 2.8692 0.7486 24 6 7.1745 2.1835 1.8208 25 6 6.3805 -3.5108 0.1235 26 6 6.0539 -4.1840 1.4724 27 6 7.3952 -4.8206 1.9138 28 6 8.4376 -3.7653 1.4678 29 6 7.8961 -3.2446 0.1205 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8484 -3.0426 -0.8907 33 1 3.8492 -3.0421 0.8893 34 1 5.8340 -1.6411 2.0368 35 1 6.0182 -0.5587 3.5453 36 1 6.4284 1.0173 5.4079 37 1 7.2774 3.2348 4.9909 38 1 6.1165 -4.1747 -0.6997 39 1 5.7265 -3.4414 2.2000 40 1 5.2920 -4.9522 1.3408 41 1 7.5606 -5.7679 1.4004 42 1 7.4211 -4.9563 2.9950 43 1 9.4152 -4.2281 1.3328 44 1 8.4973 -2.9546 2.1940 45 1 8.3676 -3.7801 -0.7036 46 1 8.0872 -2.1754 0.0285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733382199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:45 Heat of formation + Delta-G solvation = 128.900245 kcal Electronic energy + Delta-G solvation = -31154.527994 eV Core-core repulsion = 27082.760545 eV Total energy + Delta-G solvation = -4071.767449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.51953 -40.36960 -38.89335 -38.02646 -35.44812 -34.31186 -33.59861 -32.24037 -31.67605 -30.78713 -29.82202 -28.82841 -26.64935 -25.68450 -24.55130 -23.79026 -22.91346 -21.58769 -21.29474 -20.32873 -19.46996 -19.01775 -17.87706 -17.85339 -17.47811 -17.04349 -16.15387 -15.95727 -15.76842 -15.19356 -14.63819 -14.46661 -14.20598 -14.00177 -13.86243 -13.42125 -13.35307 -13.21400 -13.10951 -12.76235 -12.66487 -12.58977 -12.26183 -11.94152 -11.62730 -11.56445 -11.19346 -11.13697 -11.10885 -10.89252 -10.76448 -10.69377 -10.58123 -10.53191 -10.50836 -10.14229 -9.94197 -9.62015 -9.00709 -8.91586 -8.80479 -7.24896 -5.79471 -3.14230 -0.30864 0.23090 1.38762 1.95894 2.31710 2.92854 3.27700 3.32095 3.36857 3.43058 3.51381 3.69902 4.01314 4.17076 4.44518 4.49632 4.54403 4.58535 4.62133 4.74672 4.99621 5.04794 5.15009 5.21545 5.29850 5.31184 5.36661 5.47152 5.49098 5.52908 5.55146 5.55382 5.70432 5.76322 5.80412 5.83438 5.96074 6.00483 6.03347 6.16561 6.20365 6.26688 6.35939 6.53172 6.74070 7.46853 7.96749 8.20462 8.21747 8.39937 9.19665 9.92673 10.11963 11.38700 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007005 B = 0.005912 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.990383 B = 4734.914484 C = 7484.739464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.147 3.853 11 C 0.134 3.866 12 H 0.105 0.895 13 N -0.702 5.702 14 C 0.561 3.439 15 O -0.500 6.500 16 C -0.091 4.091 17 C -0.021 4.021 18 C -0.142 4.142 19 C 0.124 3.876 20 N -0.309 5.309 21 N -0.109 5.109 22 N -0.009 5.009 23 N -0.287 5.287 24 C 0.274 3.726 25 C -0.097 4.097 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.396 0.604 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.591 -6.734 13.925 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.019 3.981 11 C 0.030 3.970 12 H 0.123 0.877 13 N -0.355 5.355 14 C 0.346 3.654 15 O -0.374 6.374 16 C -0.100 4.100 17 C -0.047 4.047 18 C -0.165 4.165 19 C -0.003 4.003 20 N -0.090 5.090 21 N -0.092 5.092 22 N -0.002 5.002 23 N -0.144 5.144 24 C 0.015 3.985 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.158 4.158 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.232 0.768 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.202 0.798 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.076 -5.180 12.208 23.233 hybrid contribution 0.013 0.643 1.181 1.345 sum 19.089 -4.536 13.389 23.754 Atomic orbital electron populations 1.69689 1.04987 1.25773 1.57597 1.24605 0.95121 0.96938 1.02022 0.86649 0.78673 0.85205 0.78393 1.20804 1.21915 1.20894 1.19026 0.80578 0.94611 1.43031 0.89109 1.42667 1.03983 1.02179 1.91073 1.21037 0.87840 0.89815 0.99457 1.21521 0.95451 0.89690 0.90336 0.87687 1.45700 1.65693 1.13616 1.10479 1.17361 0.78510 0.81819 0.87759 1.90922 1.49551 1.74880 1.22040 1.20411 1.04392 0.89863 0.95354 1.22022 0.91667 1.00764 0.90199 1.21018 1.01735 0.91844 1.01899 1.21776 0.96616 0.97003 0.84866 1.49000 1.40053 1.11767 1.08131 1.82781 1.23140 0.98973 1.04334 1.78044 1.07927 1.10060 1.04209 1.75311 1.19212 0.98607 1.21277 1.23613 0.97548 0.93648 0.83705 1.22088 0.94903 0.95899 0.98810 1.22426 0.97264 0.99551 0.96370 1.22504 0.95000 0.98322 1.00362 1.22329 0.98266 0.98212 0.97145 1.22176 0.94662 1.01669 0.97275 0.93068 0.80424 0.94350 0.94954 0.76783 0.81904 0.80665 0.79845 0.89466 0.91739 0.91041 0.91577 0.91847 0.92168 0.92105 0.91971 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 23.62 27.73 -169.99 -4.71 18.91 16 4 H -0.28 -7.81 7.11 56.52 0.40 -7.41 16 5 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.28 -7.29 6.52 56.52 0.37 -6.92 16 7 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.56 5.24 -59.91 -0.31 -17.87 16 10 C 0.15 2.57 5.84 -4.04 -0.02 2.55 16 11 C 0.13 1.90 2.04 -67.93 -0.14 1.76 16 12 H 0.11 1.76 6.91 -51.93 -0.36 1.40 16 13 N -0.70 -9.16 3.70 -54.91 -0.20 -9.36 16 14 C 0.56 9.00 6.88 -12.57 -0.09 8.91 16 15 O -0.50 -10.17 15.62 5.26 0.08 -10.09 16 16 C -0.09 -1.25 6.06 -102.71 -0.62 -1.87 16 17 C -0.02 -0.17 9.63 -38.75 -0.37 -0.54 16 18 C -0.14 -0.78 9.92 -40.09 -0.40 -1.17 16 19 C 0.12 0.94 11.15 -16.90 -0.19 0.75 16 20 N -0.31 -4.08 3.94 -10.99 -0.04 -4.13 16 21 N -0.11 -1.70 13.99 60.35 0.84 -0.86 16 22 N -0.01 -0.17 13.36 60.35 0.81 0.64 16 23 N -0.29 -5.56 11.75 32.20 0.38 -5.18 16 24 C 0.27 4.44 7.85 -154.51 -1.21 3.22 16 25 C -0.10 -1.02 2.82 -89.50 -0.25 -1.27 16 26 C -0.12 -1.04 5.12 -25.08 -0.13 -1.16 16 27 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 28 C -0.12 -0.98 6.83 -25.07 -0.17 -1.16 16 29 C -0.12 -1.20 6.19 -25.61 -0.16 -1.36 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.36 8.77 4.67 -40.82 -0.19 8.58 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.54 7.14 -51.93 -0.37 0.17 16 34 H 0.40 3.88 5.08 -40.82 -0.21 3.67 16 35 H 0.16 0.79 6.50 -52.49 -0.34 0.45 16 36 H 0.18 0.16 8.06 -52.48 -0.42 -0.26 16 37 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.54 5.96 -51.93 -0.31 0.23 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -39.11 374.22 -6.89 -46.00 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.97 Total: 4.12 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -4.18 Total: 0.80 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: 2.24 Total: -65.37 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.71 Total: 18.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.11 -6.89 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733382199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.901 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds