Wall clock time and date at job start Wed Apr 1 2020 04:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.46998 * 30.00672 * 3 2 1 6 6 H 1.48501 * 109.46948 * 150.00172 * 3 2 1 7 7 C 1.38813 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99661 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99982 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46788 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47110 * 294.99538 * 11 10 9 13 13 N 1.46498 * 109.47289 * 54.99818 * 11 10 9 14 14 C 1.34778 * 119.99762 * 244.79280 * 13 11 10 15 15 O 1.21624 * 120.00269 * 354.99514 * 14 13 11 16 16 C 1.47315 * 119.99736 * 174.99365 * 14 13 11 17 17 C 1.39002 * 120.90638 * 359.97438 * 16 14 13 18 18 C 1.39719 * 119.28794 * 180.02562 * 17 16 14 19 19 C 1.35247 * 121.08371 * 359.97438 * 18 17 16 20 20 N 1.35717 * 121.57501 * 0.02562 * 19 18 17 21 21 N 1.40207 * 134.08977 * 180.02562 * 20 19 18 22 22 N 1.29018 * 106.95900 * 179.97438 * 21 20 19 23 23 N 1.28587 * 110.78921 * 359.76979 * 22 21 20 24 24 C 1.32049 * 110.21400 * 0.38360 * 23 22 21 25 25 C 1.53003 * 109.46877 * 174.99664 * 11 10 9 26 26 C 1.54261 * 110.03573 * 297.05058 * 25 11 10 27 27 C 1.54889 * 104.19730 * 217.10930 * 26 25 11 28 28 C 1.54888 * 102.74979 * 37.93852 * 27 26 25 29 29 C 1.53877 * 110.03134 * 179.87994 * 25 11 10 30 30 H 0.96995 * 120.00125 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99496 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.47582 * 59.99553 * 10 9 7 33 33 H 1.09004 * 109.46901 * 299.99186 * 10 9 7 34 34 H 0.96992 * 120.00366 * 64.79412 * 13 11 10 35 35 H 1.07993 * 120.35763 * 0.04479 * 17 16 14 36 36 H 1.08007 * 119.45824 * 179.97438 * 18 17 16 37 37 H 1.08007 * 119.21507 * 179.97438 * 19 18 17 38 38 H 1.09003 * 110.01734 * 58.49539 * 25 11 10 39 39 H 1.09002 * 110.48284 * 335.78256 * 26 25 11 40 40 H 1.08992 * 110.48979 * 98.42306 * 26 25 11 41 41 H 1.09001 * 110.75325 * 279.62582 * 27 26 25 42 42 H 1.08996 * 110.75763 * 156.25405 * 27 26 25 43 43 H 1.09003 * 110.48851 * 203.38443 * 28 27 26 44 44 H 1.08998 * 110.59739 * 80.79408 * 28 27 26 45 45 H 1.09002 * 110.03230 * 238.57284 * 29 25 11 46 46 H 1.09005 * 110.03256 * 359.95297 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8935 -1.6983 -0.9342 13 7 5.9526 -1.3225 1.1284 14 6 6.4267 -0.0806 0.9063 15 8 6.6615 0.2868 -0.2291 16 6 6.6605 0.8320 2.0389 17 6 6.3982 0.4319 3.3440 18 6 6.6317 1.3251 4.3927 19 6 7.1082 2.5688 4.1576 20 7 7.3780 3.0004 2.8995 21 7 7.8657 4.2007 2.3635 22 7 7.9228 4.0456 1.0839 23 7 7.5265 2.8692 0.7486 24 6 7.1745 2.1835 1.8208 25 6 6.3805 -3.5108 0.1235 26 6 6.0539 -4.1840 1.4724 27 6 7.3952 -4.8206 1.9138 28 6 8.4376 -3.7653 1.4678 29 6 7.8961 -3.2446 0.1205 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8484 -3.0426 -0.8907 33 1 3.8492 -3.0421 0.8893 34 1 5.8340 -1.6411 2.0368 35 1 6.0182 -0.5587 3.5453 36 1 6.4284 1.0173 5.4079 37 1 7.2774 3.2348 4.9909 38 1 6.1165 -4.1747 -0.6997 39 1 5.7265 -3.4414 2.2000 40 1 5.2920 -4.9522 1.3408 41 1 7.5606 -5.7679 1.4004 42 1 7.4211 -4.9563 2.9950 43 1 9.4152 -4.2281 1.3328 44 1 8.4973 -2.9546 2.1940 45 1 8.3676 -3.7801 -0.7036 46 1 8.0872 -2.1754 0.0285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733382199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:44 Heat of formation + Delta-G solvation = 99.615152 kcal Electronic energy + Delta-G solvation = -31155.797891 eV Core-core repulsion = 27082.760545 eV Total energy + Delta-G solvation = -4073.037346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.55634 -41.46611 -39.75475 -39.00407 -36.92386 -35.44654 -35.00068 -33.45681 -33.13016 -32.08092 -30.87315 -29.55331 -27.96513 -26.65542 -25.44393 -25.09296 -24.36891 -22.91958 -22.32906 -21.15382 -20.47632 -19.99084 -19.75433 -18.76353 -18.49900 -18.10450 -17.08594 -16.88042 -16.67780 -16.63101 -16.03134 -15.81240 -15.46765 -15.27712 -14.92754 -14.80488 -14.27571 -14.15177 -14.12717 -14.05619 -13.77047 -13.73842 -13.41814 -13.35025 -13.19693 -12.95933 -12.63286 -12.26032 -12.23493 -11.93793 -11.87995 -11.81392 -11.74427 -11.52165 -11.42090 -11.36765 -11.34223 -11.18201 -11.00591 -10.14118 -9.76037 -9.30880 -8.09308 -5.37692 -1.12420 -0.66220 0.52179 0.89310 1.18217 1.27687 1.31955 1.41737 1.90064 2.25323 2.35718 2.42753 2.78009 3.24226 3.32764 3.45221 3.52371 3.67190 3.74404 3.85187 3.94948 3.99144 4.14069 4.21225 4.28396 4.42362 4.49802 4.53006 4.66568 4.68653 4.73429 4.82463 4.90051 4.91319 4.92136 4.94936 5.12595 5.16173 5.20543 5.30348 5.37493 5.41412 5.49287 5.58335 5.60643 5.74668 6.16770 6.43584 7.03642 7.09965 7.13649 7.82483 7.98103 9.12532 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007005 B = 0.005912 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.990383 B = 4734.914484 C = 7484.739464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.046 4.046 3 Si 0.931 3.069 4 H -0.302 1.302 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.214 4.214 8 H 0.074 0.926 9 N -0.758 5.758 10 C 0.143 3.857 11 C 0.145 3.855 12 H 0.071 0.929 13 N -0.686 5.686 14 C 0.557 3.443 15 O -0.560 6.560 16 C -0.143 4.143 17 C 0.018 3.982 18 C -0.114 4.114 19 C 0.118 3.882 20 N -0.306 5.306 21 N -0.119 5.119 22 N -0.040 5.040 23 N -0.347 5.347 24 C 0.251 3.749 25 C -0.090 4.090 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.119 4.119 30 H 0.257 0.743 31 H 0.359 0.641 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.414 0.586 35 H 0.204 0.796 36 H 0.243 0.757 37 H 0.231 0.769 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.585 -8.970 18.814 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.238 4.238 3 Si 0.762 3.238 4 H -0.230 1.230 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.346 4.346 8 H 0.092 0.908 9 N -0.403 5.403 10 C 0.016 3.984 11 C 0.040 3.960 12 H 0.089 0.911 13 N -0.340 5.340 14 C 0.344 3.656 15 O -0.439 6.439 16 C -0.153 4.153 17 C -0.007 4.007 18 C -0.136 4.136 19 C -0.008 4.008 20 N -0.086 5.086 21 N -0.102 5.102 22 N -0.032 5.032 23 N -0.206 5.206 24 C -0.006 4.006 25 C -0.110 4.110 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.157 4.157 30 H 0.066 0.934 31 H 0.191 0.809 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.221 0.779 36 H 0.259 0.741 37 H 0.247 0.753 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.114 -7.471 17.160 27.475 hybrid contribution -0.293 1.154 -0.170 1.203 sum 19.822 -6.317 16.991 26.860 Atomic orbital electron populations 1.69791 1.06258 1.26111 1.60466 1.25086 0.95611 0.99317 1.03809 0.85824 0.78178 0.82601 0.77213 1.23034 1.21771 1.19587 1.19102 0.82485 0.93527 1.39454 0.90768 1.42790 1.02596 1.04194 1.90748 1.21296 0.89437 0.87472 1.00187 1.21273 0.93566 0.91444 0.89723 0.91073 1.45509 1.64714 1.12712 1.11065 1.17817 0.77542 0.82420 0.87835 1.90888 1.52295 1.76079 1.24628 1.20337 1.09151 0.89008 0.96775 1.22743 0.87134 1.02599 0.88273 1.21884 0.98161 0.89753 1.03802 1.23053 0.95165 0.98830 0.83737 1.49148 1.39600 1.10487 1.09353 1.82558 1.23679 1.00323 1.03684 1.77951 1.09352 1.10501 1.05440 1.75128 1.21719 0.99593 1.24115 1.23828 0.98141 0.94773 0.83868 1.22044 0.94630 0.93734 1.00579 1.22458 0.98368 0.99751 0.94974 1.22461 0.93340 0.97863 1.01576 1.22321 0.98810 0.98694 0.95729 1.22134 0.94433 1.00087 0.99023 0.93395 0.80906 0.94657 0.92435 0.74635 0.77880 0.74110 0.75267 0.89218 0.90854 0.90673 0.91276 0.89870 0.91498 0.91416 0.91885 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.22 13.97 21.65 0.30 -61.92 16 2 C -0.05 -2.74 5.50 84.86 0.47 -2.28 16 3 Si 0.93 49.82 27.73 68.60 1.90 51.72 16 4 H -0.30 -17.09 7.11 99.48 0.71 -16.38 16 5 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.27 -13.72 6.52 99.48 0.65 -13.07 16 7 C -0.21 -11.92 10.47 84.03 0.88 -11.04 16 8 H 0.07 4.36 8.06 -2.91 -0.02 4.34 16 9 N -0.76 -34.89 5.24 -343.46 -1.80 -36.69 16 10 C 0.14 4.82 5.84 86.38 0.50 5.33 16 11 C 0.14 4.02 2.04 44.99 0.09 4.11 16 12 H 0.07 2.51 6.91 -2.39 -0.02 2.50 16 13 N -0.69 -16.85 3.70 -445.89 -1.65 -18.50 16 14 C 0.56 17.95 6.88 86.63 0.60 18.55 16 15 O -0.56 -24.34 15.62 -4.11 -0.06 -24.41 16 16 C -0.14 -3.72 6.06 -18.63 -0.11 -3.83 16 17 C 0.02 0.20 9.63 22.81 0.22 0.42 16 18 C -0.11 -0.45 9.92 21.94 0.22 -0.23 16 19 C 0.12 1.19 11.15 83.40 0.93 2.12 16 20 N -0.31 -7.65 3.94 -188.68 -0.74 -8.40 16 21 N -0.12 -3.76 13.99 37.02 0.52 -3.24 16 22 N -0.04 -1.53 13.36 37.02 0.49 -1.04 16 23 N -0.35 -14.37 11.75 -52.05 -0.61 -14.98 16 24 C 0.25 8.23 7.85 135.75 1.07 9.29 16 25 C -0.09 -1.74 2.82 -10.07 -0.03 -1.77 16 26 C -0.12 -1.62 5.12 31.67 0.16 -1.45 16 27 C -0.12 -1.21 6.91 31.88 0.22 -0.99 16 28 C -0.12 -1.54 6.83 31.67 0.22 -1.32 16 29 C -0.12 -2.25 6.19 31.32 0.19 -2.06 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.36 17.29 4.67 -92.71 -0.43 16.86 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.72 7.14 -2.39 -0.02 1.70 16 34 H 0.41 6.55 5.08 -92.71 -0.47 6.08 16 35 H 0.20 0.51 6.50 -2.91 -0.02 0.50 16 36 H 0.24 -2.06 8.06 -2.91 -0.02 -2.08 16 37 H 0.23 0.11 8.06 -2.91 -0.02 0.08 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 0.87 5.96 -2.39 -0.01 0.85 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.04 1.01 7.12 -2.38 -0.02 1.00 16 Total: -1.00 -95.96 374.22 4.05 -91.91 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.08 Total: 10.69 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 5.62 Total: 14.84 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -3.49 Total: -144.75 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.90 Total: 51.72 kcal Total: -95.96 4.05 -91.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733382199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.523 kcal (2) G-P(sol) polarization free energy of solvation -95.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds