Wall clock time and date at job start Wed Apr 1 2020 04:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99700 * 2 1 4 4 H 1.48493 * 109.47303 * 270.00140 * 3 2 1 5 5 H 1.48500 * 109.47451 * 30.00424 * 3 2 1 6 6 H 1.48507 * 109.46993 * 149.99970 * 3 2 1 7 7 C 1.38804 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00111 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00271 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00185 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46689 * 175.03702 * 10 9 7 12 12 N 1.46496 * 109.46767 * 305.41347 * 11 10 9 13 13 C 1.34777 * 120.00548 * 303.97150 * 12 11 10 14 14 O 1.21618 * 119.99494 * 354.65855 * 13 12 11 15 15 C 1.47313 * 119.99949 * 174.66038 * 13 12 11 16 16 C 1.39000 * 120.90775 * 0.02562 * 15 13 12 17 17 C 1.39724 * 119.29026 * 179.97438 * 16 15 13 18 18 C 1.35259 * 121.08146 * 0.02562 * 17 16 15 19 19 N 1.35711 * 121.57085 * 359.97438 * 18 17 16 20 20 N 1.40207 * 134.08780 * 180.02562 * 19 18 17 21 21 N 1.29022 * 106.96384 * 179.97438 * 20 19 18 22 22 N 1.28592 * 110.78158 * 359.97438 * 21 20 19 23 23 C 1.32037 * 110.21810 * 0.02562 * 22 21 20 24 24 C 1.52995 * 109.47487 * 65.41944 * 11 10 9 25 25 C 1.52998 * 109.47137 * 179.97438 * 24 11 10 26 26 C 1.53001 * 109.47445 * 300.00126 * 25 24 11 27 27 C 1.53002 * 109.46932 * 59.99615 * 26 25 24 28 28 C 1.52999 * 109.46488 * 185.41846 * 11 10 9 29 29 H 0.97000 * 120.00011 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99536 * 359.97438 * 9 7 2 31 31 H 1.08991 * 109.47559 * 55.02927 * 10 9 7 32 32 H 1.08999 * 109.46461 * 295.02999 * 10 9 7 33 33 H 0.96997 * 119.99518 * 123.97367 * 12 11 10 34 34 H 1.07994 * 120.35695 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.45586 * 179.97438 * 17 16 15 36 36 H 1.07995 * 119.21358 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46867 * 299.99969 * 24 11 10 38 38 H 1.09002 * 109.47396 * 59.99431 * 24 11 10 39 39 H 1.09002 * 109.47375 * 179.97438 * 25 24 11 40 40 H 1.09007 * 109.46953 * 60.00073 * 25 24 11 41 41 H 1.09002 * 109.46535 * 299.99889 * 26 25 24 42 42 H 1.08998 * 109.46957 * 179.97438 * 26 25 24 43 43 H 1.08999 * 109.46464 * 180.02562 * 27 26 25 44 44 H 1.08994 * 109.47150 * 60.00527 * 27 26 25 45 45 H 1.08998 * 109.47623 * 299.99714 * 28 11 10 46 46 H 1.08995 * 109.47476 * 59.99833 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 -0.0011 11 6 5.6118 -2.1937 -0.1251 12 7 5.8593 -1.3663 -1.3084 13 6 5.4373 -1.7795 -2.5199 14 8 4.9384 -2.8813 -2.6468 15 6 5.5806 -0.8965 -3.6903 16 6 6.1486 0.3662 -3.5668 17 6 6.2685 1.1755 -4.6994 18 6 5.8409 0.7502 -5.9101 19 7 5.2806 -0.4748 -6.0756 20 7 4.7601 -1.1686 -7.1772 21 7 4.3553 -2.3143 -6.7434 22 7 4.5642 -2.4233 -5.4793 23 6 5.1300 -1.3248 -5.0139 24 6 6.0992 -1.4565 1.1238 25 6 7.5989 -1.1800 1.0001 26 6 8.3522 -2.5047 0.8633 27 6 7.8647 -3.2419 -0.3856 28 6 6.3654 -3.5182 -0.2621 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3620 0.0004 31 1 3.7842 -3.0791 -0.8440 32 1 3.9169 -3.0039 0.9294 33 1 6.3269 -0.5211 -1.2199 34 1 6.4944 0.7175 -2.6060 35 1 6.7090 2.1572 -4.6065 36 1 5.9479 1.4008 -6.7654 37 1 5.5622 -0.5130 1.2215 38 1 5.9150 -2.0722 2.0043 39 1 7.9461 -0.6544 1.8897 40 1 7.7834 -0.5645 0.1196 41 1 8.1676 -3.1201 1.7438 42 1 9.4206 -2.3076 0.7747 43 1 8.4011 -4.1858 -0.4828 44 1 8.0493 -2.6265 -1.2660 45 1 6.1813 -4.1339 0.6182 46 1 6.0182 -4.0434 -1.1518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734086935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:51 Heat of formation + Delta-G solvation = 101.996013 kcal Electronic energy + Delta-G solvation = -31574.688043 eV Core-core repulsion = 27501.753939 eV Total energy + Delta-G solvation = -4072.934104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.49876 -41.75733 -39.76976 -38.77710 -36.53750 -35.29898 -34.61807 -33.46068 -33.08275 -31.96357 -31.63102 -30.69446 -27.19723 -26.54685 -25.38496 -24.69030 -24.40086 -23.40358 -22.41212 -21.69802 -20.30585 -19.94057 -19.71213 -18.76124 -18.42229 -18.04498 -16.89652 -16.66607 -16.47068 -16.27943 -15.91224 -15.77465 -15.17665 -14.94773 -14.86127 -14.64273 -14.56420 -14.20624 -14.06392 -13.91209 -13.78802 -13.69281 -13.27112 -13.17233 -13.04446 -12.89852 -12.78011 -12.58806 -12.48413 -12.16782 -12.08405 -11.96031 -11.84012 -11.40671 -11.31648 -11.22355 -11.12079 -11.00702 -10.54603 -10.01630 -9.70295 -9.25847 -8.00901 -5.35050 -1.05787 -0.60889 0.58003 0.95495 1.29881 1.41817 1.50172 1.51020 1.96358 2.37243 2.49356 2.50404 2.83349 3.28994 3.39302 3.53832 3.58472 3.69073 3.84812 3.86819 3.98161 4.00476 4.19010 4.27217 4.34378 4.43430 4.49040 4.56399 4.63449 4.65193 4.72016 4.80950 4.86923 4.90454 4.96165 5.13523 5.19482 5.26266 5.30086 5.34678 5.35052 5.41617 5.51412 5.56604 5.67855 5.76349 6.20733 6.58617 7.09022 7.15884 7.28957 7.80782 8.08987 9.21812 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.005509 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.911556 B = 5081.045971 C = 6953.777708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.992 5.992 2 C -0.077 4.077 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.229 1.229 7 C -0.234 4.234 8 H 0.034 0.966 9 N -0.738 5.738 10 C 0.141 3.859 11 C 0.188 3.812 12 N -0.692 5.692 13 C 0.562 3.438 14 O -0.543 6.543 15 C -0.136 4.136 16 C 0.011 3.989 17 C -0.114 4.114 18 C 0.114 3.886 19 N -0.305 5.305 20 N -0.122 5.122 21 N -0.041 5.041 22 N -0.345 5.345 23 C 0.251 3.749 24 C -0.118 4.118 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.106 4.106 28 C -0.126 4.126 29 H 0.256 0.744 30 H 0.370 0.630 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.412 0.588 34 H 0.206 0.794 35 H 0.242 0.758 36 H 0.228 0.772 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.659 10.097 -3.225 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.643 5.643 2 C -0.267 4.267 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.152 1.152 7 C -0.365 4.365 8 H 0.052 0.948 9 N -0.384 5.384 10 C 0.014 3.986 11 C 0.102 3.898 12 N -0.347 5.347 13 C 0.348 3.652 14 O -0.420 6.420 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.136 4.136 18 C -0.012 4.012 19 N -0.086 5.086 20 N -0.106 5.106 21 N -0.034 5.034 22 N -0.203 5.203 23 C -0.006 4.006 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.144 4.144 28 C -0.165 4.165 29 H 0.065 0.935 30 H 0.204 0.796 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.251 0.749 34 H 0.223 0.777 35 H 0.258 0.742 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 27.429 8.186 -4.484 28.974 hybrid contribution -0.726 0.935 0.174 1.197 sum 26.703 9.120 -4.310 28.545 Atomic orbital electron populations 1.69959 1.07762 1.26738 1.59848 1.25748 0.96326 1.02162 1.02432 0.85298 0.79425 0.77988 0.78499 1.19734 1.22477 1.15208 1.18950 0.83182 0.92965 1.41414 0.94765 1.42293 1.01745 1.03565 1.90796 1.21146 0.91434 0.88153 0.97855 1.20457 0.92229 0.91946 0.85178 1.45574 1.59154 1.24827 1.05157 1.17686 0.78375 0.85992 0.83179 1.90853 1.43460 1.22447 1.85240 1.20423 1.07749 0.98516 0.87862 1.22742 0.87515 0.87895 1.03244 1.21874 1.00034 1.03888 0.87807 1.23010 0.92240 0.82077 1.03857 1.49135 1.37747 1.14772 1.06904 1.82546 1.20440 1.02158 1.05431 1.77959 1.10613 1.10543 1.04306 1.75131 1.21567 1.21745 1.01905 1.23859 0.97221 0.87572 0.91908 1.21816 0.97855 1.00664 0.95254 1.21571 0.92136 0.97814 1.03456 1.21538 1.00161 0.96277 0.97177 1.21409 0.93236 1.00665 0.99101 1.21835 0.96638 0.95750 1.02249 0.93508 0.79553 0.96479 0.95898 0.74901 0.77672 0.74197 0.75533 0.91434 0.90227 0.89727 0.90294 0.91988 0.90125 0.91960 0.92026 0.91005 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.95 13.97 21.65 0.30 -65.64 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.96 42.73 27.74 68.60 1.90 44.63 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 7 C -0.23 -14.04 10.47 84.03 0.88 -13.16 16 8 H 0.03 2.37 8.06 -2.91 -0.02 2.34 16 9 N -0.74 -34.37 4.99 -343.46 -1.71 -36.08 16 10 C 0.14 5.84 4.79 86.38 0.41 6.26 16 11 C 0.19 5.17 0.32 3.60 0.00 5.17 16 12 N -0.69 -16.58 3.53 -426.26 -1.50 -18.09 16 13 C 0.56 18.05 7.18 86.63 0.62 18.68 16 14 O -0.54 -23.76 12.58 -4.09 -0.05 -23.81 16 15 C -0.14 -3.52 6.06 -18.63 -0.11 -3.63 16 16 C 0.01 0.12 9.63 22.81 0.22 0.34 16 17 C -0.11 -0.44 9.92 21.94 0.22 -0.23 16 18 C 0.11 1.21 11.15 83.41 0.93 2.14 16 19 N -0.31 -7.85 3.94 -188.69 -0.74 -8.59 16 20 N -0.12 -4.00 13.99 37.02 0.52 -3.48 16 21 N -0.04 -1.65 13.36 37.02 0.49 -1.15 16 22 N -0.35 -14.64 11.75 -52.05 -0.61 -15.25 16 23 C 0.25 8.38 7.85 135.76 1.07 9.44 16 24 C -0.12 -2.43 4.67 30.59 0.14 -2.29 16 25 C -0.11 -1.35 5.75 30.59 0.18 -1.17 16 26 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 27 C -0.11 -1.93 5.76 30.58 0.18 -1.75 16 28 C -0.13 -3.29 4.57 30.58 0.14 -3.15 16 29 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.37 15.03 4.33 -92.70 -0.40 14.63 16 31 H 0.02 0.86 6.25 -2.39 -0.01 0.84 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 5.76 5.32 -92.71 -0.49 5.27 16 34 H 0.21 0.20 6.50 -2.91 -0.02 0.18 16 35 H 0.24 -2.10 8.06 -2.91 -0.02 -2.12 16 36 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.07 1.51 7.11 -2.39 -0.02 1.49 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.62 6.79 -2.38 -0.02 0.61 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.09 7.61 -2.39 -0.02 1.07 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.73 6.28 -2.39 -0.02 1.72 16 Total: -1.00 -102.11 365.77 4.20 -97.90 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.09 Total: 18.33 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.52 Total: 11.23 kcal Atomic # 7 Polarization: -145.03 SS G_CDS: -3.26 Total: -148.29 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.63 kcal Total: -102.11 4.20 -97.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734086935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.898 kcal (2) G-P(sol) polarization free energy of solvation -102.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds