Wall clock time and date at job start Wed Apr 1 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99818 * 3 2 1 5 5 H 1.48501 * 109.46867 * 29.99818 * 3 2 1 6 6 H 1.48494 * 109.47451 * 149.99599 * 3 2 1 7 7 C 1.38811 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00391 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00267 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00543 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47099 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47320 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99537 * 269.99999 * 13 12 11 15 15 C 1.50697 * 109.46949 * 269.99553 * 14 13 12 16 16 C 1.38240 * 120.00285 * 269.73140 * 15 14 13 17 17 C 1.38234 * 120.00061 * 179.76943 * 16 15 14 18 18 C 1.38234 * 120.00097 * 0.50329 * 17 16 15 19 19 C 1.38236 * 119.99962 * 359.74450 * 18 17 16 20 20 C 1.38234 * 120.00009 * 90.00411 * 15 14 13 21 21 C 1.34777 * 120.00264 * 89.99349 * 13 12 11 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 13 12 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 13 12 24 24 N 1.46491 * 109.46957 * 179.72354 * 23 21 13 25 25 C 1.34595 * 126.44002 * 125.00057 * 24 23 21 26 26 N 1.31073 * 106.68189 * 179.97438 * 25 24 23 27 27 N 1.28841 * 107.99106 * 359.97438 * 26 25 24 28 28 N 1.28739 * 109.39430 * 359.73676 * 27 26 25 29 29 H 0.96996 * 120.00118 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99817 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47075 * 59.99274 * 10 9 7 32 32 H 1.08996 * 109.46595 * 299.99221 * 10 9 7 33 33 H 1.08997 * 109.47528 * 59.99741 * 11 10 9 34 34 H 1.09004 * 109.47258 * 299.99747 * 11 10 9 35 35 H 1.08994 * 109.47354 * 59.99979 * 12 11 10 36 36 H 1.09001 * 109.47139 * 299.99554 * 12 11 10 37 37 H 1.09001 * 109.47567 * 29.99407 * 14 13 12 38 38 H 1.09005 * 109.47076 * 149.99913 * 14 13 12 39 39 H 1.07999 * 119.99683 * 359.97438 * 16 15 14 40 40 H 1.07999 * 120.00183 * 180.22986 * 17 16 15 41 41 H 1.08000 * 119.99977 * 179.72788 * 18 17 16 42 42 H 1.07999 * 120.00179 * 179.97438 * 19 18 17 43 43 H 1.07995 * 120.00306 * 359.97438 * 20 15 14 44 44 H 1.09004 * 109.46965 * 299.72211 * 23 21 13 45 45 H 1.08994 * 109.46990 * 59.72065 * 23 21 13 46 46 H 1.08003 * 126.66266 * 359.95789 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.3813 -3.5164 0.0017 13 7 7.8217 -3.2487 0.0023 14 6 8.5423 -3.1152 -1.2661 15 6 9.0491 -4.4663 -1.7006 16 6 10.3029 -4.8941 -1.3055 17 6 10.7657 -6.1354 -1.7001 18 6 9.9791 -6.9447 -2.4983 19 6 8.7275 -6.5149 -2.8976 20 6 8.2625 -5.2756 -2.4988 21 6 8.4837 -3.1252 1.1698 22 8 9.6760 -2.9032 1.1702 23 6 7.7435 -3.2688 2.4746 24 7 8.6799 -3.0997 3.5884 25 6 8.5649 -2.2235 4.6036 26 7 9.6094 -2.4024 5.3751 27 7 10.3281 -3.3399 4.8608 28 7 9.7663 -3.7676 3.7843 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3622 0.0007 31 1 3.8490 -3.0424 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.8797 -1.6198 0.8910 34 1 5.8797 -1.6198 -0.8890 35 1 6.1181 -4.0884 -0.8880 36 1 6.1180 -4.0876 0.8920 37 1 7.8696 -2.7179 -2.0262 38 1 9.3848 -2.4360 -1.1356 39 1 10.9194 -4.2598 -0.6858 40 1 11.7437 -6.4712 -1.3883 41 1 10.3426 -7.9127 -2.8102 42 1 8.1131 -7.1469 -3.5216 43 1 7.2846 -4.9398 -2.8108 44 1 6.9647 -2.5085 2.5361 45 1 7.2900 -4.2585 2.5281 46 1 7.7671 -1.5111 4.7534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734274234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:17 Heat of formation + Delta-G solvation = 135.252112 kcal Electronic energy + Delta-G solvation = -29463.107347 eV Core-core repulsion = 25391.615336 eV Total energy + Delta-G solvation = -4071.492011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.35110 -40.72958 -39.21560 -36.96043 -35.77054 -35.16892 -32.93890 -32.59136 -31.84627 -31.14262 -30.18138 -29.63508 -26.68047 -25.65934 -24.01947 -23.60230 -22.95539 -22.57650 -21.79627 -21.36987 -19.79957 -18.31612 -17.89258 -17.71993 -17.11064 -16.80590 -16.44005 -16.10225 -15.81053 -15.31115 -15.22498 -14.96366 -14.72879 -14.32698 -14.03994 -13.69257 -13.64840 -13.30381 -13.11394 -12.90172 -12.77631 -12.63803 -12.53447 -12.34929 -12.21563 -11.61005 -11.47199 -11.39424 -11.32662 -11.22518 -11.15940 -11.02417 -10.86601 -10.62186 -10.29453 -10.24842 -9.73742 -9.21113 -9.16553 -9.05537 -9.02768 -7.40719 -5.90465 -3.27943 0.92186 1.07468 1.15961 1.55714 2.00413 2.10518 2.53260 3.24641 3.28085 3.35317 3.53455 3.66946 3.94320 4.01848 4.28742 4.44813 4.45895 4.50835 4.56047 4.59870 4.74928 4.75813 4.86224 4.94932 5.11782 5.19933 5.20898 5.32098 5.35877 5.38700 5.43527 5.47068 5.50955 5.65964 5.71346 5.78196 5.81154 5.89353 5.99639 6.19581 6.26810 6.32035 6.43095 6.45749 6.73577 6.80638 7.56099 7.83721 8.27986 8.43044 9.05875 9.77995 9.95927 11.27602 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003283 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.467547 B = 8527.909549 C =11579.402590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.756 5.756 10 C 0.160 3.840 11 C -0.151 4.151 12 C 0.103 3.897 13 N -0.597 5.597 14 C 0.156 3.844 15 C -0.110 4.110 16 C -0.094 4.094 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.104 4.104 21 C 0.508 3.492 22 O -0.511 6.511 23 C 0.093 3.907 24 N -0.300 5.300 25 C 0.163 3.837 26 N -0.308 5.308 27 N -0.081 5.081 28 N -0.065 5.065 29 H 0.261 0.739 30 H 0.361 0.639 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.049 -11.217 -2.083 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.190 4.190 12 C -0.020 4.020 13 N -0.330 5.330 14 C 0.034 3.966 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.123 4.123 21 C 0.293 3.707 22 O -0.385 6.385 23 C -0.033 4.033 24 N -0.102 5.102 25 C -0.135 4.135 26 N -0.155 5.155 27 N -0.075 5.075 28 N -0.052 5.052 29 H 0.071 0.929 30 H 0.194 0.806 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 19.668 -11.776 -1.686 22.986 hybrid contribution -0.666 1.612 -0.500 1.814 sum 19.003 -10.164 -2.186 21.661 Atomic orbital electron populations 1.69694 1.05146 1.26023 1.56980 1.24693 0.95237 0.97290 1.01730 0.86548 0.79085 0.84946 0.77833 1.21022 1.21617 1.20444 1.19024 0.80486 0.94777 1.43759 0.89157 1.42682 1.04142 1.02079 1.91323 1.20524 0.87593 0.89721 0.99000 1.22263 0.96993 0.96731 1.02965 1.21817 0.77802 0.97910 1.04460 1.47933 1.09232 1.70802 1.04999 1.20416 0.97682 0.93956 0.84509 1.20164 0.94973 0.97051 0.98923 1.21232 0.95556 0.96194 0.98242 1.21193 1.00041 0.94569 0.98414 1.21203 0.94673 0.99642 0.97935 1.21152 0.96265 0.96397 1.00463 1.21109 0.99413 0.94231 0.97537 1.20092 0.87775 0.77898 0.84979 1.90815 1.14098 1.46955 1.86606 1.22169 0.90165 1.08308 0.82623 1.48165 1.17538 1.24979 1.19470 1.27811 1.01669 0.97574 0.86474 1.75000 1.02787 1.13064 1.24629 1.78657 1.20510 1.06729 1.01629 1.78989 0.95127 1.17424 1.13651 0.92891 0.80649 0.95213 0.95380 0.91864 0.90993 0.88975 0.89952 0.88811 0.88823 0.85522 0.86124 0.86205 0.85988 0.85856 0.83507 0.84554 0.74738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 20.67 27.74 -169.99 -4.71 15.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16 7 C -0.25 -6.55 10.47 -15.06 -0.16 -6.70 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.76 -15.70 5.41 -59.91 -0.32 -16.03 16 10 C 0.16 2.35 6.26 -4.04 -0.03 2.32 16 11 C -0.15 -1.49 5.65 -26.73 -0.15 -1.64 16 12 C 0.10 0.72 5.22 -4.04 -0.02 0.70 16 13 N -0.60 -4.85 2.46 -175.06 -0.43 -5.28 16 14 C 0.16 1.31 5.53 -5.20 -0.03 1.28 16 15 C -0.11 -0.99 5.46 -104.62 -0.57 -1.57 16 16 C -0.09 -0.94 9.70 -39.58 -0.38 -1.33 16 17 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 18 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 19 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 20 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 21 C 0.51 4.92 7.69 -10.98 -0.08 4.84 16 22 O -0.51 -6.93 14.85 5.55 0.08 -6.85 16 23 C 0.09 0.64 5.52 -5.20 -0.03 0.61 16 24 N -0.30 -3.06 3.19 -63.74 -0.20 -3.26 16 25 C 0.16 1.52 12.79 -90.39 -1.16 0.37 16 26 N -0.31 -4.08 12.36 29.59 0.37 -3.71 16 27 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 28 N -0.07 -0.91 12.31 60.35 0.74 -0.16 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.36 7.33 5.53 -40.82 -0.23 7.11 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.59 7.24 -51.93 -0.38 0.22 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.08 0.42 6.43 -51.93 -0.33 0.09 16 37 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 38 H 0.09 0.89 7.36 -51.93 -0.38 0.50 16 39 H 0.13 1.41 7.61 -52.49 -0.40 1.01 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.15 0.58 7.15 -51.93 -0.37 0.21 16 45 H 0.14 0.64 7.40 -51.93 -0.38 0.25 16 46 H 0.24 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -36.84 391.96 -7.55 -44.39 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.28 Total: 3.11 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.28 Total: -6.55 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 1.74 Total: -55.97 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.08 Total: -6.85 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.84 -7.55 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734274234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.640 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds