Wall clock time and date at job start Wed Apr 1 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99818 * 3 2 1 5 5 H 1.48501 * 109.46867 * 29.99818 * 3 2 1 6 6 H 1.48494 * 109.47451 * 149.99599 * 3 2 1 7 7 C 1.38811 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00391 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00267 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00543 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47099 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47320 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99537 * 269.99999 * 13 12 11 15 15 C 1.50697 * 109.46949 * 269.99553 * 14 13 12 16 16 C 1.38240 * 120.00285 * 269.73140 * 15 14 13 17 17 C 1.38234 * 120.00061 * 179.76943 * 16 15 14 18 18 C 1.38234 * 120.00097 * 0.50329 * 17 16 15 19 19 C 1.38236 * 119.99962 * 359.74450 * 18 17 16 20 20 C 1.38234 * 120.00009 * 90.00411 * 15 14 13 21 21 C 1.34777 * 120.00264 * 89.99349 * 13 12 11 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 13 12 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 13 12 24 24 N 1.46491 * 109.46957 * 179.72354 * 23 21 13 25 25 C 1.34595 * 126.44002 * 125.00057 * 24 23 21 26 26 N 1.31073 * 106.68189 * 179.97438 * 25 24 23 27 27 N 1.28841 * 107.99106 * 359.97438 * 26 25 24 28 28 N 1.28739 * 109.39430 * 359.73676 * 27 26 25 29 29 H 0.96996 * 120.00118 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99817 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47075 * 59.99274 * 10 9 7 32 32 H 1.08996 * 109.46595 * 299.99221 * 10 9 7 33 33 H 1.08997 * 109.47528 * 59.99741 * 11 10 9 34 34 H 1.09004 * 109.47258 * 299.99747 * 11 10 9 35 35 H 1.08994 * 109.47354 * 59.99979 * 12 11 10 36 36 H 1.09001 * 109.47139 * 299.99554 * 12 11 10 37 37 H 1.09001 * 109.47567 * 29.99407 * 14 13 12 38 38 H 1.09005 * 109.47076 * 149.99913 * 14 13 12 39 39 H 1.07999 * 119.99683 * 359.97438 * 16 15 14 40 40 H 1.07999 * 120.00183 * 180.22986 * 17 16 15 41 41 H 1.08000 * 119.99977 * 179.72788 * 18 17 16 42 42 H 1.07999 * 120.00179 * 179.97438 * 19 18 17 43 43 H 1.07995 * 120.00306 * 359.97438 * 20 15 14 44 44 H 1.09004 * 109.46965 * 299.72211 * 23 21 13 45 45 H 1.08994 * 109.46990 * 59.72065 * 23 21 13 46 46 H 1.08003 * 126.66266 * 359.95789 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.3813 -3.5164 0.0017 13 7 7.8217 -3.2487 0.0023 14 6 8.5423 -3.1152 -1.2661 15 6 9.0491 -4.4663 -1.7006 16 6 10.3029 -4.8941 -1.3055 17 6 10.7657 -6.1354 -1.7001 18 6 9.9791 -6.9447 -2.4983 19 6 8.7275 -6.5149 -2.8976 20 6 8.2625 -5.2756 -2.4988 21 6 8.4837 -3.1252 1.1698 22 8 9.6760 -2.9032 1.1702 23 6 7.7435 -3.2688 2.4746 24 7 8.6799 -3.0997 3.5884 25 6 8.5649 -2.2235 4.6036 26 7 9.6094 -2.4024 5.3751 27 7 10.3281 -3.3399 4.8608 28 7 9.7663 -3.7676 3.7843 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3622 0.0007 31 1 3.8490 -3.0424 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.8797 -1.6198 0.8910 34 1 5.8797 -1.6198 -0.8890 35 1 6.1181 -4.0884 -0.8880 36 1 6.1180 -4.0876 0.8920 37 1 7.8696 -2.7179 -2.0262 38 1 9.3848 -2.4360 -1.1356 39 1 10.9194 -4.2598 -0.6858 40 1 11.7437 -6.4712 -1.3883 41 1 10.3426 -7.9127 -2.8102 42 1 8.1131 -7.1469 -3.5216 43 1 7.2846 -4.9398 -2.8108 44 1 6.9647 -2.5085 2.5361 45 1 7.2900 -4.2585 2.5281 46 1 7.7671 -1.5111 4.7534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734274234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:16 Heat of formation + Delta-G solvation = 111.098204 kcal Electronic energy + Delta-G solvation = -29464.154739 eV Core-core repulsion = 25391.615336 eV Total energy + Delta-G solvation = -4072.539403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.19172 -41.42819 -39.87414 -37.85769 -36.67109 -36.37871 -34.14102 -33.50730 -33.03417 -31.78944 -31.45933 -30.30210 -27.54321 -26.70567 -24.86419 -24.52509 -24.08352 -23.40814 -22.56320 -22.43610 -20.50173 -19.59338 -18.99298 -18.60487 -17.77669 -17.56177 -17.16310 -16.83341 -16.58233 -16.39852 -15.98097 -15.88449 -15.79867 -15.64914 -14.88793 -14.69080 -14.60938 -14.29526 -14.07816 -13.84320 -13.64526 -13.54339 -13.44906 -13.20559 -12.96047 -12.85988 -12.80285 -12.35242 -12.23998 -12.17893 -12.12413 -11.95147 -11.85979 -11.80034 -11.74524 -11.48588 -11.01419 -10.90549 -9.90454 -9.82338 -9.69042 -9.22505 -7.98088 -5.30896 0.20606 0.36589 0.49875 0.92224 1.22379 1.32465 1.41488 1.45513 1.53245 1.87962 2.52892 2.89183 3.02626 3.34766 3.37413 3.46258 3.68903 3.82043 3.85769 3.91140 3.93440 4.05993 4.15165 4.26793 4.29790 4.36107 4.38473 4.44994 4.57390 4.62278 4.66506 4.72380 4.75191 4.77663 4.99088 5.09690 5.13480 5.16253 5.27007 5.42592 5.45471 5.56671 5.62447 5.66596 5.83076 6.10610 6.15580 6.26657 6.88807 7.14964 7.55268 7.92810 8.08063 9.23482 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003283 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.467547 B = 8527.909549 C =11579.402590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.953 3.047 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.243 1.243 7 C -0.229 4.229 8 H 0.059 0.941 9 N -0.762 5.762 10 C 0.153 3.847 11 C -0.137 4.137 12 C 0.107 3.893 13 N -0.588 5.588 14 C 0.156 3.844 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.107 4.107 21 C 0.503 3.497 22 O -0.557 6.557 23 C 0.087 3.913 24 N -0.296 5.296 25 C 0.181 3.819 26 N -0.343 5.343 27 N -0.117 5.117 28 N -0.092 5.092 29 H 0.256 0.744 30 H 0.366 0.634 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.027 -11.384 -2.488 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.230 1.230 6 H -0.167 1.167 7 C -0.361 4.361 8 H 0.077 0.923 9 N -0.407 5.407 10 C 0.026 3.974 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.319 5.319 14 C 0.034 3.966 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.125 4.125 21 C 0.289 3.711 22 O -0.435 6.435 23 C -0.036 4.036 24 N -0.099 5.099 25 C -0.117 4.117 26 N -0.191 5.191 27 N -0.112 5.112 28 N -0.079 5.079 29 H 0.065 0.935 30 H 0.199 0.801 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.204 0.796 45 H 0.182 0.818 46 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 19.693 -11.990 -2.105 23.152 hybrid contribution -0.715 1.543 -0.462 1.763 sum 18.978 -10.446 -2.567 21.815 Atomic orbital electron populations 1.69886 1.07326 1.26578 1.60013 1.25524 0.96021 1.01348 1.02987 0.85438 0.78943 0.79662 0.77863 1.21006 1.23011 1.16691 1.19048 0.82996 0.93324 1.40685 0.92296 1.42749 1.02325 1.04632 1.91042 1.20764 0.90155 0.87211 0.99234 1.22095 0.93601 0.98359 1.03534 1.21863 0.76440 0.96671 1.06548 1.47912 1.09527 1.69957 1.04548 1.20415 0.97632 0.93397 0.85130 1.20226 0.94643 0.97449 0.99149 1.21194 0.96307 0.96651 0.99112 1.21366 1.00699 0.94553 0.98907 1.21472 0.94796 1.00283 0.97444 1.21486 0.96305 0.96611 1.00210 1.21341 1.00040 0.94141 0.96982 1.20598 0.87382 0.76968 0.86128 1.90816 1.16266 1.49094 1.87280 1.22628 0.89594 1.11330 0.80045 1.48374 1.16906 1.24399 1.20184 1.28713 1.01243 0.96805 0.84897 1.74899 1.04333 1.13576 1.26266 1.78623 1.21922 1.08058 1.02566 1.78907 0.96681 1.18657 1.13638 0.93532 0.80144 0.95359 0.94241 0.90556 0.91387 0.87853 0.87202 0.86997 0.90631 0.87687 0.85607 0.84318 0.83899 0.83928 0.79623 0.81790 0.69714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -60.21 13.97 21.65 0.30 -59.90 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 41.67 27.74 68.60 1.90 43.58 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.24 -9.06 6.52 99.48 0.65 -8.41 16 7 C -0.23 -11.73 10.47 84.03 0.88 -10.85 16 8 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 9 N -0.76 -29.23 5.41 -343.47 -1.86 -31.08 16 10 C 0.15 3.89 6.26 86.38 0.54 4.43 16 11 C -0.14 -2.05 5.65 30.59 0.17 -1.88 16 12 C 0.11 0.99 5.22 86.38 0.45 1.44 16 13 N -0.59 -7.75 2.46 -826.15 -2.03 -9.78 16 14 C 0.16 2.34 5.53 85.63 0.47 2.81 16 15 C -0.11 -1.91 5.46 -19.87 -0.11 -2.02 16 16 C -0.11 -2.33 9.70 22.27 0.22 -2.12 16 17 C -0.14 -2.48 10.05 22.27 0.22 -2.25 16 18 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 19 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 20 C -0.11 -1.48 9.70 22.27 0.22 -1.27 16 21 C 0.50 8.56 7.69 87.66 0.67 9.23 16 22 O -0.56 -14.96 14.85 -3.04 -0.05 -15.01 16 23 C 0.09 0.87 5.52 85.64 0.47 1.34 16 24 N -0.30 -5.36 3.19 -355.58 -1.13 -6.49 16 25 C 0.18 2.87 12.79 180.27 2.31 5.18 16 26 N -0.34 -8.82 12.36 -60.29 -0.74 -9.57 16 27 N -0.12 -3.59 13.43 37.01 0.50 -3.09 16 28 N -0.09 -2.51 12.31 37.02 0.46 -2.05 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.37 13.34 5.53 -92.70 -0.51 12.83 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.99 7.24 -2.39 -0.02 0.97 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.10 0.82 8.07 -2.39 -0.02 0.81 16 36 H 0.11 0.48 6.43 -2.39 -0.02 0.47 16 37 H 0.11 1.24 8.02 -2.39 -0.02 1.22 16 38 H 0.08 1.42 7.36 -2.38 -0.02 1.41 16 39 H 0.10 2.55 7.61 -2.91 -0.02 2.53 16 40 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.19 0.35 7.15 -2.38 -0.02 0.33 16 45 H 0.16 0.74 7.40 -2.39 -0.02 0.72 16 46 H 0.29 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -85.50 391.96 5.22 -80.29 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.43 Total: 15.40 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 7.43 Total: -2.28 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -4.51 Total: -121.98 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.05 Total: -15.01 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.90 Total: 43.58 kcal Total: -85.50 5.22 -80.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734274234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.386 kcal (2) G-P(sol) polarization free energy of solvation -85.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds