Wall clock time and date at job start Wed Apr 1 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99947 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47087 * 149.99669 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46997 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47146 * 54.99480 * 13 12 11 15 15 N 1.46507 * 109.46847 * 295.00407 * 13 12 11 16 16 C 1.34775 * 119.99633 * 155.00283 * 15 13 12 17 17 O 1.21279 * 120.00203 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99660 * 179.97438 * 16 15 13 19 19 N 1.46499 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.34599 * 126.43903 * 125.00091 * 19 18 16 21 21 N 1.31074 * 106.67746 * 180.02562 * 20 19 18 22 22 N 1.28839 * 107.99234 * 359.97438 * 21 20 19 23 23 N 1.28737 * 109.39929 * 359.73639 * 22 21 20 24 24 C 1.50697 * 109.47301 * 175.00426 * 13 12 11 25 25 C 1.38227 * 120.00319 * 79.72338 * 24 13 12 26 26 C 1.38236 * 120.00043 * 179.78863 * 25 24 13 27 27 C 1.38231 * 119.99864 * 0.44035 * 26 25 24 28 28 C 1.38234 * 120.00125 * 359.81442 * 27 26 25 29 29 C 1.38236 * 120.00045 * 359.97438 * 28 27 26 30 30 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 31 31 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 33 33 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 34 34 H 1.09000 * 109.47050 * 299.99945 * 11 10 9 35 35 H 1.09001 * 109.46801 * 60.00058 * 11 10 9 36 36 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 37 37 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 38 38 H 0.96993 * 120.00030 * 334.99464 * 15 13 12 39 39 H 1.08998 * 109.47020 * 299.99685 * 18 16 15 40 40 H 1.09009 * 109.46966 * 59.99745 * 18 16 15 41 41 H 1.08000 * 126.65764 * 0.03327 * 20 19 18 42 42 H 1.08003 * 120.00197 * 0.02562 * 25 24 13 43 43 H 1.08005 * 119.99848 * 180.28019 * 26 25 24 44 44 H 1.08003 * 119.99818 * 179.83112 * 27 26 25 45 45 H 1.08002 * 120.00427 * 179.97438 * 28 27 26 46 46 H 1.07994 * 120.00071 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0018 13 6 0.8347 -7.3077 -0.0018 14 1 0.1502 -7.2005 -0.8433 15 7 0.0740 -7.2998 1.2503 16 6 -1.1506 -7.8605 1.2983 17 8 -1.6231 -8.3712 0.3049 18 6 -1.9328 -7.8529 2.5864 19 7 -3.2218 -8.5175 2.3789 20 6 -3.7099 -9.5539 3.0855 21 7 -4.8831 -9.8381 2.5749 22 7 -5.1044 -9.0186 1.6056 23 7 -4.1051 -8.2154 1.4882 24 6 1.5840 -8.6092 -0.1262 25 6 2.1908 -9.1662 0.9839 26 6 2.8745 -10.3623 0.8706 27 6 2.9590 -10.9967 -0.3546 28 6 2.3567 -10.4371 -1.4658 29 6 1.6693 -9.2432 -1.3517 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6847 -3.7146 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4368 -4.7621 0.8886 35 1 0.4375 -4.7617 -0.8914 36 1 2.4556 -6.2020 -0.8918 37 1 2.4555 -6.2029 0.8882 38 1 0.4518 -6.8912 2.0447 39 1 -1.3707 -8.3819 3.3559 40 1 -2.1018 -6.8236 2.9027 41 1 -3.2283 -10.0541 3.9127 42 1 2.1276 -8.6688 1.9405 43 1 3.3448 -10.7998 1.7390 44 1 3.4955 -11.9299 -0.4436 45 1 2.4231 -10.9325 -2.4231 46 1 1.1984 -8.8061 -2.2197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734285295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:54 Heat of formation + Delta-G solvation = 93.970708 kcal Electronic energy + Delta-G solvation = -28999.256964 eV Core-core repulsion = 24925.974857 eV Total energy + Delta-G solvation = -4073.282107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.15485 -41.35751 -39.89092 -37.80516 -36.59869 -36.23802 -34.27573 -33.47704 -32.89637 -31.75400 -31.63405 -30.11663 -28.21606 -25.88297 -24.85853 -24.49942 -23.86819 -23.47591 -22.24286 -22.10581 -21.39450 -19.17754 -18.93007 -18.75800 -17.84992 -17.51936 -17.22238 -16.75588 -16.60914 -16.52889 -16.05372 -15.81559 -15.47242 -15.30222 -15.21628 -14.69546 -14.56608 -14.24525 -14.14185 -13.91268 -13.57294 -13.48113 -13.21641 -13.12625 -12.91880 -12.73771 -12.57086 -12.21263 -12.18067 -12.13123 -12.08648 -11.92849 -11.87872 -11.74080 -11.64810 -11.46645 -11.00295 -10.93011 -10.27759 -9.79317 -9.62363 -8.99967 -7.95694 -5.24654 0.28000 0.42982 0.52504 0.99306 1.26483 1.42297 1.47354 1.49189 1.57527 2.04158 2.55811 2.88190 3.29470 3.38436 3.48991 3.54589 3.63022 3.90012 3.98748 4.02656 4.05276 4.08687 4.14139 4.19055 4.30812 4.39680 4.42461 4.56100 4.64423 4.71636 4.73026 4.74726 4.85300 4.90783 5.07289 5.10500 5.15725 5.21965 5.27748 5.42467 5.43077 5.50924 5.58222 5.64200 5.72605 6.13140 6.27010 6.40122 7.10981 7.32932 7.58941 8.10647 8.31776 9.27884 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007736 B = 0.002744 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.358205 B =10201.862723 C =13211.162294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.750 5.750 10 C 0.150 3.850 11 C -0.111 4.111 12 C -0.101 4.101 13 C 0.197 3.803 14 H 0.067 0.933 15 N -0.697 5.697 16 C 0.500 3.500 17 O -0.567 6.567 18 C 0.091 3.909 19 N -0.298 5.298 20 C 0.184 3.816 21 N -0.348 5.348 22 N -0.121 5.121 23 N -0.100 5.100 24 C -0.101 4.101 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.031 0.969 33 H 0.013 0.987 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.424 0.576 39 H 0.210 0.790 40 H 0.163 0.837 41 H 0.298 0.702 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -25.901 11.663 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.024 3.976 11 C -0.149 4.149 12 C -0.140 4.140 13 C 0.092 3.908 14 H 0.086 0.914 15 N -0.350 5.350 16 C 0.284 3.716 17 O -0.444 6.444 18 C -0.032 4.032 19 N -0.100 5.100 20 C -0.113 4.113 21 N -0.195 5.195 22 N -0.116 5.116 23 N -0.087 5.087 24 C -0.102 4.102 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.263 0.737 39 H 0.227 0.773 40 H 0.180 0.820 41 H 0.313 0.687 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.580 -25.977 10.063 28.411 hybrid contribution 0.643 1.347 0.060 1.494 sum 6.223 -24.629 10.122 27.346 Atomic orbital electron populations 1.69820 1.06673 1.26074 1.59596 1.25588 0.96389 1.01209 1.03780 0.85148 0.77845 0.79462 0.77372 1.21682 1.22181 1.19069 1.19652 0.91545 0.85428 1.41068 0.90535 1.42647 1.05661 1.01514 1.89456 1.20847 0.94212 0.84745 0.97809 1.21588 0.97936 0.93552 1.01831 1.21693 0.96948 0.90501 1.04830 1.19654 0.91937 0.91910 0.87266 0.91439 1.45719 1.16312 1.58737 1.14280 1.20813 0.82193 0.78178 0.90376 1.90857 1.69617 1.46053 1.37899 1.22585 0.78165 1.04663 0.97778 1.48416 1.16116 1.24046 1.21414 1.28814 0.91970 0.89596 1.00953 1.74864 1.15913 1.21415 1.07348 1.78654 1.17517 1.02155 1.13227 1.78986 0.96498 1.21630 1.11598 1.20180 0.99074 0.96610 0.94384 1.21186 0.96850 0.96048 0.98534 1.21492 0.99015 0.95474 0.98298 1.21484 0.99566 1.00733 0.92987 1.21356 0.98090 0.95741 0.99887 1.21184 0.99753 0.96306 0.97605 0.94044 0.79624 0.95091 0.96882 0.91036 0.93932 0.90268 0.88393 0.73745 0.77348 0.81966 0.68711 0.83583 0.83533 0.84301 0.85202 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -37.16 5.60 -343.46 -1.92 -39.09 16 10 C 0.15 5.44 6.26 86.38 0.54 5.98 16 11 C -0.11 -2.99 5.22 30.60 0.16 -2.84 16 12 C -0.10 -1.87 4.73 30.60 0.14 -1.73 16 13 C 0.20 3.62 2.17 44.25 0.10 3.72 16 14 H 0.07 1.72 7.44 -2.39 -0.02 1.70 16 15 N -0.70 -8.56 3.78 -446.08 -1.69 -10.25 16 16 C 0.50 8.20 7.81 87.66 0.68 8.88 16 17 O -0.57 -16.66 15.37 -3.03 -0.05 -16.71 16 18 C 0.09 0.56 6.96 85.63 0.60 1.16 16 19 N -0.30 -4.91 3.19 -355.55 -1.13 -6.04 16 20 C 0.18 2.33 12.79 180.27 2.31 4.63 16 21 N -0.35 -8.52 12.36 -60.29 -0.74 -9.27 16 22 N -0.12 -3.81 13.43 37.01 0.50 -3.32 16 23 N -0.10 -2.87 12.30 37.02 0.46 -2.42 16 24 C -0.10 -1.83 4.91 -19.87 -0.10 -1.92 16 25 C -0.11 -1.42 9.32 22.27 0.21 -1.21 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 27 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 28 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 29 C -0.13 -2.69 9.67 22.27 0.22 -2.47 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.37 19.79 7.67 -92.70 -0.71 19.08 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.42 1.90 8.60 -92.71 -0.80 1.11 16 39 H 0.21 -1.56 8.08 -2.39 -0.02 -1.58 16 40 H 0.16 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.30 -0.83 8.06 -2.91 -0.02 -0.86 16 42 H 0.15 1.00 7.73 -2.91 -0.02 0.98 16 43 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.11 2.41 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -93.97 397.96 4.06 -89.90 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.49 Total: 16.12 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 6.83 Total: -7.48 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -4.25 Total: -129.34 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.05 Total: -16.71 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -93.97 4.06 -89.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734285295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.871 kcal (2) G-P(sol) polarization free energy of solvation -93.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds