Wall clock time and date at job start Wed Apr 1 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46951 * 2 1 4 4 C 1.53003 * 109.47114 * 119.99707 * 2 1 3 5 5 N 1.46503 * 109.46808 * 175.00098 * 4 2 1 6 6 C 1.46501 * 120.00405 * 270.00554 * 5 4 2 7 7 C 1.34774 * 119.99840 * 90.00563 * 5 4 2 8 8 O 1.21281 * 120.00019 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.99902 * 180.02562 * 7 5 4 10 10 S 1.81005 * 109.46934 * 179.97438 * 9 7 5 11 11 C 1.76207 * 99.99717 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99632 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00002 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99512 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47535 * 60.00182 * 15 13 11 17 17 H 1.48502 * 109.46849 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47465 * 299.99933 * 15 13 11 19 19 N 1.46894 * 109.47283 * 240.00243 * 2 1 3 20 20 C 1.46902 * 110.99953 * 84.99757 * 19 2 1 21 21 C 1.52999 * 109.47112 * 180.02562 * 20 19 2 22 22 N 1.46497 * 109.47130 * 179.97438 * 21 20 19 23 23 C 1.47057 * 125.40952 * 90.00073 * 22 21 20 24 24 C 1.54105 * 103.99235 * 179.97438 * 23 22 21 25 25 N 1.47394 * 103.70056 * 0.10684 * 24 23 22 26 26 C 1.33947 * 109.21036 * 359.88525 * 25 24 23 27 27 O 1.21594 * 123.03846 * 180.09410 * 26 25 24 28 28 H 1.08993 * 109.47371 * 60.00178 * 1 2 3 29 29 H 1.09004 * 109.46427 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47027 * 299.99494 * 1 2 3 31 31 H 1.08995 * 109.47723 * 295.00175 * 4 2 1 32 32 H 1.09004 * 109.46573 * 55.00626 * 4 2 1 33 33 H 1.09000 * 109.47292 * 89.99873 * 6 5 4 34 34 H 1.08996 * 109.47310 * 210.00515 * 6 5 4 35 35 H 1.09009 * 109.46898 * 329.99927 * 6 5 4 36 36 H 1.09005 * 109.46957 * 299.99601 * 9 7 5 37 37 H 1.08995 * 109.47477 * 59.99692 * 9 7 5 38 38 H 0.97001 * 119.99366 * 179.97438 * 14 13 11 39 39 H 1.00898 * 111.00301 * 321.04400 * 19 2 1 40 40 H 1.09000 * 109.47307 * 59.99747 * 20 19 2 41 41 H 1.09002 * 109.47269 * 299.99863 * 20 19 2 42 42 H 1.09000 * 109.47340 * 59.99647 * 21 20 19 43 43 H 1.09001 * 109.47326 * 300.00216 * 21 20 19 44 44 H 1.09002 * 110.54831 * 298.59477 * 23 22 21 45 45 H 1.08997 * 110.54826 * 61.25951 * 23 22 21 46 46 H 1.08996 * 110.55034 * 118.66113 * 24 23 22 47 47 H 1.09001 * 110.54910 * 241.47819 * 24 23 22 48 48 H 0.97000 * 125.37712 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1260 -1.9917 0.5611 7 6 4.2676 0.1493 1.7156 8 8 3.7495 1.1144 2.2363 9 6 5.7695 0.0415 1.6547 10 16 6.5109 1.4956 2.4372 11 6 8.2193 1.1165 2.2305 12 1 8.5136 0.2021 1.7369 13 6 9.1866 1.9931 2.7021 14 7 8.8278 3.1073 3.3041 15 14 10.9976 1.5915 2.4824 16 1 11.3043 1.4637 1.0350 17 1 11.8206 2.6802 3.0679 18 1 11.3078 0.3119 3.1689 19 7 2.0197 -0.6924 -1.1994 20 6 2.0825 0.2227 -2.3468 21 6 2.5951 -0.5330 -3.5744 22 7 2.6571 0.3795 -4.7189 23 6 3.8190 1.1998 -5.0926 24 6 3.3513 1.9569 -6.3508 25 7 1.9702 1.4825 -6.5505 26 6 1.6642 0.5999 -5.5905 27 8 0.5830 0.0485 -5.5172 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 4.2800 -1.7930 -0.4995 34 1 5.0865 -2.1896 1.0369 35 1 3.4771 -2.8599 0.6777 36 1 6.0908 -0.8578 2.1802 37 1 6.0880 -0.0126 0.6137 38 1 9.5039 3.7197 3.6340 39 1 1.4497 -1.4978 -1.4101 40 1 2.7588 1.0464 -2.1181 41 1 1.0871 0.6164 -2.5525 42 1 1.9184 -1.3564 -3.8030 43 1 3.5904 -0.9270 -3.3691 44 1 4.0652 1.9004 -4.2948 45 1 4.6760 0.5668 -5.3226 46 1 3.3658 3.0329 -6.1773 47 1 3.9744 1.6979 -7.2069 48 1 1.3775 1.7641 -7.2648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734312000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:23 Heat of formation + Delta-G solvation = -42.482937 kcal Electronic energy + Delta-G solvation = -28094.928475 eV Core-core repulsion = 24118.880494 eV Total energy + Delta-G solvation = -3976.047981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23776 -39.48037 -37.50547 -36.57903 -35.24586 -34.27252 -32.40724 -31.70345 -29.52410 -29.17002 -27.52996 -27.03102 -25.58729 -25.07046 -23.41475 -22.95515 -21.32915 -20.37972 -19.03599 -17.98019 -17.59045 -16.96104 -16.60276 -16.35994 -16.08620 -15.52753 -15.43836 -14.94330 -14.78836 -14.50410 -14.41219 -14.13058 -14.02744 -13.86307 -13.31602 -13.11729 -13.01927 -12.74474 -12.70954 -12.60150 -12.39916 -12.31465 -12.15673 -11.90620 -11.82413 -11.42876 -11.35845 -11.02970 -11.01810 -11.00682 -10.74253 -10.47613 -9.78186 -9.64439 -9.24486 -9.03988 -8.94072 -8.73965 -8.19269 -8.13839 -6.46582 -6.19455 -3.89336 2.22627 2.86273 3.06464 3.19487 3.23982 3.28117 3.31620 3.50852 3.71659 4.02276 4.11515 4.22941 4.50597 4.53840 4.76546 4.87856 4.93758 4.97005 5.08448 5.12039 5.15372 5.17651 5.26024 5.31703 5.32870 5.34954 5.41744 5.61476 5.63125 5.70139 5.70499 5.76563 5.88322 5.89497 5.96021 6.00516 6.05670 6.21970 6.38482 6.74084 6.77670 6.84869 7.17426 7.23118 7.61122 7.73957 8.29585 8.37191 8.71211 9.25634 10.87905 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.002664 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.712799 B =10508.006245 C =12561.688580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.132 3.868 5 N -0.607 5.607 6 C 0.093 3.907 7 C 0.532 3.468 8 O -0.525 6.525 9 C -0.147 4.147 10 S -0.065 6.065 11 C -0.534 4.534 12 H 0.071 0.929 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.673 5.673 20 C 0.043 3.957 21 C 0.155 3.845 22 N -0.630 5.630 23 C 0.089 3.911 24 C 0.092 3.908 25 N -0.745 5.745 26 C 0.699 3.301 27 O -0.590 6.590 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.338 0.662 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 -8.369 -17.795 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.008 3.992 5 N -0.341 5.341 6 C -0.050 4.050 7 C 0.320 3.680 8 O -0.400 6.400 9 C -0.297 4.297 10 S 0.162 5.838 11 C -0.682 4.682 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.200 1.200 19 N -0.304 5.304 20 C -0.087 4.087 21 C 0.032 3.968 22 N -0.369 5.369 23 C -0.035 4.035 24 C -0.033 4.033 25 N -0.407 5.407 26 C 0.399 3.601 27 O -0.468 6.468 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -13.439 -7.091 -16.582 22.491 hybrid contribution 0.722 -1.028 -1.399 1.880 sum -12.716 -8.119 -17.981 23.472 Atomic orbital electron populations 1.22419 0.96743 1.02107 1.02599 1.22034 0.92470 0.99205 0.90606 0.89775 1.21382 0.80464 1.00355 0.97000 1.47555 1.05502 1.21985 1.59058 1.21669 0.97785 0.87092 0.98471 1.20275 0.88893 0.81800 0.77033 1.90677 1.74708 1.30921 1.43708 1.23524 0.93981 1.06919 1.05305 1.85377 1.02124 1.21413 1.74885 1.22824 0.91196 1.09649 1.44513 0.91056 1.24986 0.99509 0.94505 0.94590 1.70016 1.34294 1.09913 1.36147 0.86243 0.82671 0.78119 0.78571 1.19966 1.20865 1.19958 1.60480 1.57252 1.09454 1.03177 1.22336 1.00098 0.96185 0.90131 1.21126 1.03031 0.90419 0.82192 1.47086 1.14278 1.46453 1.29040 1.22444 0.89902 0.94503 0.96623 1.22429 0.83240 0.99786 0.97824 1.45191 1.16420 1.47167 1.31915 1.15923 0.83918 0.80100 0.80178 1.90958 1.23394 1.55412 1.77063 0.92617 0.92340 0.91606 0.89697 0.91109 0.91869 0.91808 0.92131 0.89503 0.89427 0.92194 0.84454 0.90722 0.94847 0.90029 0.89138 0.89589 0.89679 0.89779 0.89856 0.73066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16 2 C 0.07 0.74 2.89 -67.71 -0.20 0.54 16 3 H 0.08 1.18 7.80 -51.93 -0.40 0.78 16 4 C 0.13 1.55 5.19 -4.04 -0.02 1.53 16 5 N -0.61 -8.44 2.73 -181.56 -0.50 -8.94 16 6 C 0.09 0.99 9.61 59.85 0.58 1.57 16 7 C 0.53 10.10 7.69 -10.99 -0.08 10.02 16 8 O -0.52 -11.95 15.44 5.56 0.09 -11.87 16 9 C -0.15 -2.99 4.71 36.01 0.17 -2.82 16 10 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 11 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.67 -6.27 4.95 -106.72 -0.53 -6.79 16 20 C 0.04 0.43 5.81 -3.82 -0.02 0.41 16 21 C 0.15 1.37 6.26 -4.04 -0.03 1.34 16 22 N -0.63 -5.86 2.96 -178.81 -0.53 -6.39 16 23 C 0.09 0.56 7.67 -3.16 -0.02 0.53 16 24 C 0.09 0.44 8.08 -2.98 -0.02 0.42 16 25 N -0.74 -5.71 6.39 -64.46 -0.41 -6.12 16 26 C 0.70 7.99 8.60 -88.40 -0.76 7.23 16 27 O -0.59 -9.21 17.53 5.28 0.09 -9.12 16 28 H 0.05 0.54 7.45 -51.93 -0.39 0.15 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 32 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.06 0.64 7.73 -51.93 -0.40 0.24 16 34 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 35 H 0.06 0.51 7.89 -51.92 -0.41 0.10 16 36 H 0.09 1.66 7.40 -51.91 -0.38 1.27 16 37 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.34 2.67 8.47 -39.29 -0.33 2.34 16 40 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 41 H 0.03 0.39 7.44 -51.93 -0.39 0.00 16 42 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.43 2.56 8.96 -40.82 -0.37 2.20 16 LS Contribution 407.41 15.07 6.14 6.14 Total: -1.00 -37.74 407.41 -9.98 -47.71 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.95 Total: 1.87 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 0.13 Total: 6.66 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -1.23 Total: -53.62 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.18 Total: -20.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.74 -9.98 -47.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734312000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.229 kcal (2) G-P(sol) polarization free energy of solvation -37.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds