Wall clock time and date at job start Wed Apr 1 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46951 * 2 1 4 4 C 1.53003 * 109.47114 * 119.99707 * 2 1 3 5 5 N 1.46503 * 109.46808 * 175.00098 * 4 2 1 6 6 C 1.46501 * 120.00405 * 270.00554 * 5 4 2 7 7 C 1.34774 * 119.99840 * 90.00563 * 5 4 2 8 8 O 1.21281 * 120.00019 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.99902 * 180.02562 * 7 5 4 10 10 S 1.81005 * 109.46934 * 179.97438 * 9 7 5 11 11 C 1.76207 * 99.99717 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99632 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00002 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99512 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47535 * 60.00182 * 15 13 11 17 17 H 1.48502 * 109.46849 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47465 * 299.99933 * 15 13 11 19 19 N 1.46894 * 109.47283 * 240.00243 * 2 1 3 20 20 C 1.46902 * 110.99953 * 84.99757 * 19 2 1 21 21 C 1.52999 * 109.47112 * 180.02562 * 20 19 2 22 22 N 1.46497 * 109.47130 * 179.97438 * 21 20 19 23 23 C 1.47057 * 125.40952 * 90.00073 * 22 21 20 24 24 C 1.54105 * 103.99235 * 179.97438 * 23 22 21 25 25 N 1.47394 * 103.70056 * 0.10684 * 24 23 22 26 26 C 1.33947 * 109.21036 * 359.88525 * 25 24 23 27 27 O 1.21594 * 123.03846 * 180.09410 * 26 25 24 28 28 H 1.08993 * 109.47371 * 60.00178 * 1 2 3 29 29 H 1.09004 * 109.46427 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47027 * 299.99494 * 1 2 3 31 31 H 1.08995 * 109.47723 * 295.00175 * 4 2 1 32 32 H 1.09004 * 109.46573 * 55.00626 * 4 2 1 33 33 H 1.09000 * 109.47292 * 89.99873 * 6 5 4 34 34 H 1.08996 * 109.47310 * 210.00515 * 6 5 4 35 35 H 1.09009 * 109.46898 * 329.99927 * 6 5 4 36 36 H 1.09005 * 109.46957 * 299.99601 * 9 7 5 37 37 H 1.08995 * 109.47477 * 59.99692 * 9 7 5 38 38 H 0.97001 * 119.99366 * 179.97438 * 14 13 11 39 39 H 1.00898 * 111.00301 * 321.04400 * 19 2 1 40 40 H 1.09000 * 109.47307 * 59.99747 * 20 19 2 41 41 H 1.09002 * 109.47269 * 299.99863 * 20 19 2 42 42 H 1.09000 * 109.47340 * 59.99647 * 21 20 19 43 43 H 1.09001 * 109.47326 * 300.00216 * 21 20 19 44 44 H 1.09002 * 110.54831 * 298.59477 * 23 22 21 45 45 H 1.08997 * 110.54826 * 61.25951 * 23 22 21 46 46 H 1.08996 * 110.55034 * 118.66113 * 24 23 22 47 47 H 1.09001 * 110.54910 * 241.47819 * 24 23 22 48 48 H 0.97000 * 125.37712 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1260 -1.9917 0.5611 7 6 4.2676 0.1493 1.7156 8 8 3.7495 1.1144 2.2363 9 6 5.7695 0.0415 1.6547 10 16 6.5109 1.4956 2.4372 11 6 8.2193 1.1165 2.2305 12 1 8.5136 0.2021 1.7369 13 6 9.1866 1.9931 2.7021 14 7 8.8278 3.1073 3.3041 15 14 10.9976 1.5915 2.4824 16 1 11.3043 1.4637 1.0350 17 1 11.8206 2.6802 3.0679 18 1 11.3078 0.3119 3.1689 19 7 2.0197 -0.6924 -1.1994 20 6 2.0825 0.2227 -2.3468 21 6 2.5951 -0.5330 -3.5744 22 7 2.6571 0.3795 -4.7189 23 6 3.8190 1.1998 -5.0926 24 6 3.3513 1.9569 -6.3508 25 7 1.9702 1.4825 -6.5505 26 6 1.6642 0.5999 -5.5905 27 8 0.5830 0.0485 -5.5172 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 4.2800 -1.7930 -0.4995 34 1 5.0865 -2.1896 1.0369 35 1 3.4771 -2.8599 0.6777 36 1 6.0908 -0.8578 2.1802 37 1 6.0880 -0.0126 0.6137 38 1 9.5039 3.7197 3.6340 39 1 1.4497 -1.4978 -1.4101 40 1 2.7588 1.0464 -2.1181 41 1 1.0871 0.6164 -2.5525 42 1 1.9184 -1.3564 -3.8030 43 1 3.5904 -0.9270 -3.3691 44 1 4.0652 1.9004 -4.2948 45 1 4.6760 0.5668 -5.3226 46 1 3.3658 3.0329 -6.1773 47 1 3.9744 1.6979 -7.2069 48 1 1.3775 1.7641 -7.2648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734312000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:22 Heat of formation + Delta-G solvation = -71.552524 kcal Electronic energy + Delta-G solvation = -28096.189027 eV Core-core repulsion = 24118.880494 eV Total energy + Delta-G solvation = -3977.308533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95316 -40.80299 -38.51876 -37.43909 -36.30292 -35.18219 -34.55249 -32.58765 -30.85033 -29.88793 -28.31285 -28.00796 -27.63777 -26.27403 -24.02996 -23.69856 -22.27046 -21.18079 -20.47886 -19.43632 -18.69289 -17.94045 -17.64544 -17.23301 -17.10255 -16.84885 -16.70880 -16.47331 -15.94703 -15.69113 -15.35724 -15.15056 -14.96560 -14.75397 -14.48393 -14.44146 -14.21832 -13.72489 -13.62218 -13.44251 -13.41235 -13.20576 -13.12661 -13.05439 -12.87903 -12.83518 -12.72779 -12.59228 -12.35792 -12.18542 -11.92271 -11.68671 -11.41157 -11.09745 -10.77891 -10.41196 -10.21988 -9.77974 -9.52107 -9.18748 -8.63404 -8.31271 -6.09283 1.30565 1.46143 1.49891 1.56298 1.59806 1.71058 2.03229 2.26928 2.33328 2.92536 3.02596 3.29754 3.33480 3.57923 3.78118 3.84160 3.96332 4.02236 4.13522 4.24161 4.27704 4.31096 4.37792 4.48375 4.48865 4.56268 4.61002 4.65683 4.70120 4.76890 4.84244 4.92071 4.93016 4.95971 5.00025 5.09419 5.17452 5.21958 5.44392 5.65687 5.72798 5.92161 6.15515 6.22784 6.45413 6.46910 6.50820 7.09685 7.29618 7.51317 8.77728 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.002664 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.712799 B =10508.006245 C =12561.688580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.045 0.955 4 C 0.130 3.870 5 N -0.591 5.591 6 C 0.086 3.914 7 C 0.528 3.472 8 O -0.574 6.574 9 C -0.119 4.119 10 S -0.156 6.156 11 C -0.543 4.543 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.913 5.913 15 Si 0.998 3.002 16 H -0.260 1.260 17 H -0.280 1.280 18 H -0.263 1.263 19 N -0.664 5.664 20 C 0.057 3.943 21 C 0.160 3.840 22 N -0.633 5.633 23 C 0.082 3.918 24 C 0.094 3.906 25 N -0.738 5.738 26 C 0.686 3.314 27 O -0.641 6.641 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.270 0.730 39 H 0.352 0.648 40 H 0.055 0.945 41 H 0.013 0.987 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -10.854 -19.539 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.035 4.035 3 H 0.063 0.937 4 C 0.007 3.993 5 N -0.322 5.322 6 C -0.056 4.056 7 C 0.315 3.685 8 O -0.454 6.454 9 C -0.270 4.270 10 S 0.071 5.929 11 C -0.691 4.691 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.820 3.180 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.187 1.187 19 N -0.296 5.296 20 C -0.074 4.074 21 C 0.037 3.963 22 N -0.370 5.370 23 C -0.040 4.040 24 C -0.030 4.030 25 N -0.399 5.399 26 C 0.386 3.614 27 O -0.524 6.524 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.171 0.829 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.128 0.872 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.227 -9.609 -18.374 24.072 hybrid contribution 0.255 -0.307 -0.908 0.992 sum -11.973 -9.916 -19.282 24.768 Atomic orbital electron populations 1.22330 0.95096 1.03476 1.02103 1.21811 0.93638 0.97112 0.90981 0.93680 1.21564 0.78998 1.02277 0.96460 1.47561 1.06240 1.21292 1.57135 1.21962 0.98387 0.86626 0.98644 1.20095 0.88542 0.82354 0.77477 1.90662 1.75190 1.33190 1.46363 1.23332 0.94782 1.03516 1.05336 1.85585 1.03828 1.26844 1.76671 1.23154 0.91210 1.10141 1.44616 0.89945 1.26133 1.05068 0.94093 0.93872 1.70191 1.36099 1.11257 1.37372 0.85011 0.75619 0.78167 0.79248 1.18409 1.20549 1.18717 1.60420 1.57389 1.09454 1.02340 1.22150 0.98501 0.95921 0.90872 1.21094 1.03697 0.90034 0.81473 1.47204 1.14767 1.46498 1.28577 1.22700 0.89455 0.94611 0.97263 1.22674 0.81759 1.00432 0.98139 1.45227 1.17731 1.45961 1.31027 1.16265 0.83610 0.80457 0.81070 1.90906 1.25498 1.57505 1.78474 0.93406 0.89953 0.91861 0.91791 0.87147 0.90784 0.91925 0.88708 0.87820 0.87815 0.92070 0.82892 0.92666 0.96849 0.90455 0.87416 0.89748 0.87761 0.88282 0.87182 0.72307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.08 1.61 2.89 44.92 0.13 1.74 16 3 H 0.04 1.33 7.80 -2.39 -0.02 1.31 16 4 C 0.13 2.86 5.19 86.38 0.45 3.31 16 5 N -0.59 -15.44 2.73 -846.74 -2.31 -17.75 16 6 C 0.09 1.52 9.61 127.77 1.23 2.75 16 7 C 0.53 20.06 7.69 87.66 0.67 20.74 16 8 O -0.57 -27.21 15.44 -3.03 -0.05 -27.26 16 9 C -0.12 -4.79 4.71 71.24 0.34 -4.45 16 10 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 11 C -0.54 -30.89 9.50 67.96 0.65 -30.25 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 15 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 N -0.66 -11.36 4.95 -491.56 -2.43 -13.80 16 20 C 0.06 1.12 5.81 86.30 0.50 1.62 16 21 C 0.16 2.65 6.26 86.38 0.54 3.19 16 22 N -0.63 -11.25 2.96 -838.36 -2.48 -13.73 16 23 C 0.08 0.88 7.67 86.65 0.66 1.55 16 24 C 0.09 0.69 8.08 86.58 0.70 1.39 16 25 N -0.74 -10.54 6.39 -476.58 -3.04 -13.58 16 26 C 0.69 15.54 8.60 179.57 1.55 17.08 16 27 O -0.64 -20.47 17.53 -4.01 -0.07 -20.54 16 28 H 0.05 0.91 7.45 -2.39 -0.02 0.89 16 29 H 0.08 1.04 8.13 -2.38 -0.02 1.02 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 32 H 0.11 1.60 7.89 -2.38 -0.02 1.58 16 33 H 0.07 1.22 7.73 -2.39 -0.02 1.20 16 34 H 0.06 1.17 6.44 -2.39 -0.02 1.15 16 35 H 0.09 1.11 7.89 -2.38 -0.02 1.09 16 36 H 0.10 3.82 7.40 -2.39 -0.02 3.80 16 37 H 0.10 3.82 8.11 -2.40 -0.02 3.80 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 39 H 0.35 4.62 8.47 -89.70 -0.76 3.86 16 40 H 0.05 1.31 8.06 -2.39 -0.02 1.29 16 41 H 0.01 0.32 7.44 -2.39 -0.02 0.30 16 42 H 0.08 1.38 7.91 -2.39 -0.02 1.36 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.43 4.84 8.96 -92.71 -0.83 4.01 16 Total: -1.00 -87.08 407.41 -1.31 -88.39 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.62 Total: 21.28 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 8.54 Total: 17.60 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -9.98 Total: -114.61 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.12 Total: -47.80 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -87.08 -1.31 -88.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734312000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.835 kcal (2) G-P(sol) polarization free energy of solvation -87.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds