Wall clock time and date at job start Wed Apr 1 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48491 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46956 * 300.00175 * 3 2 1 6 6 H 1.48503 * 109.46952 * 60.00114 * 3 2 1 7 7 C 1.38813 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99733 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47126 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46797 * 299.99929 * 10 9 7 13 13 C 1.53000 * 109.47266 * 294.99617 * 12 10 9 14 14 N 1.46494 * 109.47292 * 180.02562 * 13 12 10 15 15 C 1.34780 * 120.00466 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99204 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00368 * 180.02562 * 15 14 13 18 18 N 1.46494 * 109.47371 * 179.97438 * 17 15 14 19 19 N 1.28894 * 125.44402 * 89.99912 * 18 17 15 20 20 C 1.31042 * 107.91100 * 180.02562 * 19 18 17 21 21 N 1.33310 * 106.90471 * 0.02562 * 20 19 18 22 22 N 1.28782 * 125.45733 * 269.69961 * 18 17 15 23 23 C 1.52996 * 109.47205 * 59.99675 * 10 9 7 24 24 C 1.50702 * 109.47203 * 65.00245 * 23 10 9 25 25 C 1.38234 * 119.99895 * 269.72772 * 24 23 10 26 26 C 1.38240 * 120.00062 * 180.32314 * 25 24 23 27 27 C 1.38235 * 119.99708 * 359.94741 * 26 25 24 28 28 C 1.38234 * 120.00204 * 0.02562 * 27 26 25 29 29 C 1.38230 * 119.99885 * 0.02562 * 28 27 26 30 30 H 0.96994 * 119.99929 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00381 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47262 * 54.99847 * 12 10 9 33 33 H 1.09008 * 109.46910 * 174.99935 * 12 10 9 34 34 H 1.08994 * 109.47383 * 300.00342 * 13 12 10 35 35 H 1.09003 * 109.46466 * 60.00450 * 13 12 10 36 36 H 0.97003 * 119.99981 * 359.97438 * 14 13 12 37 37 H 1.08994 * 109.47670 * 300.00106 * 17 15 14 38 38 H 1.09008 * 109.47026 * 59.99907 * 17 15 14 39 39 H 1.08005 * 126.54555 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.47252 * 305.00423 * 23 10 9 41 41 H 1.09001 * 109.47630 * 185.00477 * 23 10 9 42 42 H 1.08001 * 120.00279 * 0.27436 * 25 24 23 43 43 H 1.07997 * 119.99852 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99766 * 180.02562 * 27 26 25 45 45 H 1.07992 * 119.99701 * 179.97438 * 28 27 26 46 46 H 1.08000 * 120.00356 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 1.3498 -4.4852 0.0020 12 6 2.9386 -3.7384 -1.2469 13 6 2.0529 -3.7835 -2.4936 14 7 2.8959 -3.8622 -3.6890 15 6 2.3296 -3.9123 -4.9111 16 8 1.1220 -3.8917 -5.0209 17 6 3.1969 -3.9938 -6.1407 18 7 2.3488 -4.0370 -7.3345 19 7 1.9385 -3.0105 -7.9973 20 6 1.2063 -3.4415 -8.9950 21 7 1.1857 -4.7720 -8.9143 22 7 1.8985 -5.1066 -7.8927 23 6 2.9367 -3.7373 1.2515 24 6 2.0625 -3.7806 2.4783 25 6 1.6907 -2.6054 3.1039 26 6 0.8943 -2.6455 4.2331 27 6 0.4688 -3.8608 4.7360 28 6 0.8401 -5.0360 4.1100 29 6 1.6374 -4.9959 2.9815 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.5861 -2.8627 -1.2927 33 1 3.5495 -4.6401 -1.2024 34 1 1.4054 -4.6591 -2.4478 35 1 1.4420 -2.8818 -2.5381 36 1 3.8619 -3.8776 -3.6012 37 1 3.8453 -3.1190 -6.1868 38 1 3.8068 -4.8962 -6.0960 39 1 0.7136 -2.8346 -9.7403 40 1 3.5842 -2.8616 1.2976 41 1 3.5478 -4.6389 1.2088 42 1 2.0231 -1.6559 2.7110 43 1 0.6042 -1.7273 4.7221 44 1 -0.1538 -3.8921 5.6180 45 1 0.5080 -5.9854 4.5032 46 1 1.9279 -5.9141 2.4926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734460388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:33 Heat of formation + Delta-G solvation = 131.006063 kcal Electronic energy + Delta-G solvation = -29081.814894 eV Core-core repulsion = 25010.138760 eV Total energy + Delta-G solvation = -4071.676134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.43259 -39.84006 -38.86088 -36.72964 -35.12235 -34.64662 -33.18797 -32.54015 -31.29673 -30.34394 -29.98285 -28.77273 -26.99291 -24.31073 -24.07048 -23.76321 -22.67220 -22.00747 -20.94189 -20.75900 -19.56410 -18.19421 -18.06904 -17.17513 -16.34635 -16.22926 -16.11926 -15.74340 -15.29467 -15.12531 -14.62954 -14.41581 -14.19473 -13.93308 -13.88887 -13.49446 -13.21239 -13.01320 -12.88495 -12.70016 -12.44685 -12.09877 -11.74283 -11.54435 -11.40991 -11.26838 -11.08965 -11.08508 -10.95638 -10.87220 -10.75408 -10.54450 -10.40179 -10.39815 -9.96737 -9.84912 -9.63527 -9.06685 -8.97311 -8.37953 -8.11067 -7.02575 -5.82678 -3.11931 1.05442 1.61611 1.88229 1.96732 2.15096 2.33309 3.01637 3.35800 3.40347 3.45075 3.90471 4.23748 4.30689 4.36309 4.43958 4.51936 4.73852 5.23151 5.28174 5.34016 5.39029 5.47362 5.53477 5.57410 5.61515 5.63054 5.74204 5.87162 5.90748 5.97207 6.03874 6.07646 6.18104 6.29810 6.34097 6.36954 6.55052 6.60935 6.64091 6.70992 6.86002 6.94192 7.10016 7.32521 7.32903 7.59032 7.61948 7.99473 8.23757 8.33852 9.46124 10.03241 10.37883 11.39025 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.002547 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.934108 B =10991.854954 C =12626.607989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.186 3.814 11 H 0.055 0.945 12 C -0.139 4.139 13 C 0.127 3.873 14 N -0.714 5.714 15 C 0.498 3.502 16 O -0.519 6.519 17 C 0.109 3.891 18 N -0.125 5.125 19 N -0.299 5.299 20 C 0.144 3.856 21 N -0.287 5.287 22 N -0.052 5.052 23 C -0.093 4.093 24 C -0.058 4.058 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.400 0.600 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.236 0.764 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.701 -9.934 -4.874 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.074 3.926 11 H 0.073 0.927 12 C -0.179 4.179 13 C 0.005 3.995 14 N -0.365 5.365 15 C 0.280 3.720 16 O -0.394 6.394 17 C -0.016 4.016 18 N -0.036 5.036 19 N -0.148 5.148 20 C -0.159 4.159 21 N -0.158 5.158 22 N -0.046 5.046 23 C -0.133 4.133 24 C -0.058 4.058 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.252 0.748 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.110 -10.295 -4.610 14.499 hybrid contribution 0.313 1.645 -0.147 1.681 sum 9.423 -8.651 -4.756 13.647 Atomic orbital electron populations 1.69660 1.05010 1.25473 1.56933 1.24685 0.95290 0.97368 1.02955 0.86321 0.78808 0.84976 0.77272 1.20649 1.22007 1.21946 1.19046 0.90781 0.83885 1.43010 0.91217 1.42390 1.05687 0.99564 1.87890 1.20053 0.92441 0.90100 0.89981 0.92657 1.22283 0.99054 1.01217 0.95373 1.21487 0.93243 1.03206 0.81594 1.45952 1.10815 1.74073 1.05698 1.20132 0.88978 0.78315 0.84592 1.90847 1.14111 1.48323 1.86113 1.22046 0.91466 1.08970 0.79120 1.49483 1.32625 1.01225 1.20267 1.74747 1.16037 1.16595 1.07439 1.27347 0.99507 0.90874 0.98201 1.75857 1.15293 1.12930 1.11721 1.78966 1.08502 1.13258 1.03860 1.21144 0.97283 1.01267 0.93589 1.19785 0.97710 0.92587 0.95708 1.21282 0.96034 0.99009 0.93402 1.21151 0.98588 0.97293 0.97188 1.20984 1.01152 0.92949 1.00313 1.20928 0.99689 0.97583 0.96884 1.20960 0.99618 0.97268 0.96926 0.93556 0.78060 0.90712 0.92916 0.92247 0.89144 0.76589 0.83679 0.83656 0.74796 0.90669 0.92705 0.84867 0.86892 0.87222 0.87179 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 13.06 55.49 0.72 -25.46 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.89 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.24 -5.58 7.89 -15.06 -0.12 -5.70 16 8 H 0.07 1.60 6.64 -52.49 -0.35 1.25 16 9 N -0.72 -15.31 4.14 -53.43 -0.22 -15.53 16 10 C 0.19 3.08 2.67 -67.93 -0.18 2.90 16 11 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.14 -1.92 4.73 -26.73 -0.13 -2.05 16 13 C 0.13 1.90 5.56 -4.05 -0.02 1.88 16 14 N -0.71 -8.07 5.56 -60.30 -0.33 -8.41 16 15 C 0.50 6.48 7.90 -10.99 -0.09 6.40 16 16 O -0.52 -9.81 16.43 5.55 0.09 -9.71 16 17 C 0.11 0.93 7.08 -5.20 -0.04 0.89 16 18 N -0.12 -1.57 3.49 -11.72 -0.04 -1.61 16 19 N -0.30 -3.94 12.13 29.34 0.36 -3.59 16 20 C 0.14 1.67 13.26 -91.59 -1.21 0.46 16 21 N -0.29 -3.98 12.50 29.33 0.37 -3.61 16 22 N -0.05 -0.73 13.25 60.35 0.80 0.07 16 23 C -0.09 -1.45 4.75 -27.88 -0.13 -1.58 16 24 C -0.06 -0.97 4.95 -104.62 -0.52 -1.48 16 25 C -0.08 -1.46 9.32 -39.58 -0.37 -1.82 16 26 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 27 C -0.14 -2.04 10.05 -39.58 -0.40 -2.44 16 28 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 29 C -0.13 -1.94 9.70 -39.59 -0.38 -2.33 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 9.47 8.02 -40.82 -0.33 9.14 16 32 H 0.07 1.12 7.11 -51.93 -0.37 0.75 16 33 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 36 H 0.40 2.89 8.47 -40.82 -0.35 2.54 16 37 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.15 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.24 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.07 1.27 7.05 -51.93 -0.37 0.90 16 41 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.13 2.74 7.38 -52.49 -0.39 2.35 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -34.51 394.72 -8.14 -42.66 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.33 Total: 13.24 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -4.48 Total: -9.93 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 1.65 Total: -58.14 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.51 -8.14 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.664 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds