Wall clock time and date at job start Wed Apr 1 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48491 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46956 * 300.00175 * 3 2 1 6 6 H 1.48503 * 109.46952 * 60.00114 * 3 2 1 7 7 C 1.38813 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99733 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47126 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46797 * 299.99929 * 10 9 7 13 13 C 1.53000 * 109.47266 * 294.99617 * 12 10 9 14 14 N 1.46494 * 109.47292 * 180.02562 * 13 12 10 15 15 C 1.34780 * 120.00466 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99204 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00368 * 180.02562 * 15 14 13 18 18 N 1.46494 * 109.47371 * 179.97438 * 17 15 14 19 19 N 1.28894 * 125.44402 * 89.99912 * 18 17 15 20 20 C 1.31042 * 107.91100 * 180.02562 * 19 18 17 21 21 N 1.33310 * 106.90471 * 0.02562 * 20 19 18 22 22 N 1.28782 * 125.45733 * 269.69961 * 18 17 15 23 23 C 1.52996 * 109.47205 * 59.99675 * 10 9 7 24 24 C 1.50702 * 109.47203 * 65.00245 * 23 10 9 25 25 C 1.38234 * 119.99895 * 269.72772 * 24 23 10 26 26 C 1.38240 * 120.00062 * 180.32314 * 25 24 23 27 27 C 1.38235 * 119.99708 * 359.94741 * 26 25 24 28 28 C 1.38234 * 120.00204 * 0.02562 * 27 26 25 29 29 C 1.38230 * 119.99885 * 0.02562 * 28 27 26 30 30 H 0.96994 * 119.99929 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00381 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47262 * 54.99847 * 12 10 9 33 33 H 1.09008 * 109.46910 * 174.99935 * 12 10 9 34 34 H 1.08994 * 109.47383 * 300.00342 * 13 12 10 35 35 H 1.09003 * 109.46466 * 60.00450 * 13 12 10 36 36 H 0.97003 * 119.99981 * 359.97438 * 14 13 12 37 37 H 1.08994 * 109.47670 * 300.00106 * 17 15 14 38 38 H 1.09008 * 109.47026 * 59.99907 * 17 15 14 39 39 H 1.08005 * 126.54555 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.47252 * 305.00423 * 23 10 9 41 41 H 1.09001 * 109.47630 * 185.00477 * 23 10 9 42 42 H 1.08001 * 120.00279 * 0.27436 * 25 24 23 43 43 H 1.07997 * 119.99852 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99766 * 180.02562 * 27 26 25 45 45 H 1.07992 * 119.99701 * 179.97438 * 28 27 26 46 46 H 1.08000 * 120.00356 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 1.3498 -4.4852 0.0020 12 6 2.9386 -3.7384 -1.2469 13 6 2.0529 -3.7835 -2.4936 14 7 2.8959 -3.8622 -3.6890 15 6 2.3296 -3.9123 -4.9111 16 8 1.1220 -3.8917 -5.0209 17 6 3.1969 -3.9938 -6.1407 18 7 2.3488 -4.0370 -7.3345 19 7 1.9385 -3.0105 -7.9973 20 6 1.2063 -3.4415 -8.9950 21 7 1.1857 -4.7720 -8.9143 22 7 1.8985 -5.1066 -7.8927 23 6 2.9367 -3.7373 1.2515 24 6 2.0625 -3.7806 2.4783 25 6 1.6907 -2.6054 3.1039 26 6 0.8943 -2.6455 4.2331 27 6 0.4688 -3.8608 4.7360 28 6 0.8401 -5.0360 4.1100 29 6 1.6374 -4.9959 2.9815 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.5861 -2.8627 -1.2927 33 1 3.5495 -4.6401 -1.2024 34 1 1.4054 -4.6591 -2.4478 35 1 1.4420 -2.8818 -2.5381 36 1 3.8619 -3.8776 -3.6012 37 1 3.8453 -3.1190 -6.1868 38 1 3.8068 -4.8962 -6.0960 39 1 0.7136 -2.8346 -9.7403 40 1 3.5842 -2.8616 1.2976 41 1 3.5478 -4.6389 1.2088 42 1 2.0231 -1.6559 2.7110 43 1 0.6042 -1.7273 4.7221 44 1 -0.1538 -3.8921 5.6180 45 1 0.5080 -5.9854 4.5032 46 1 1.9279 -5.9141 2.4926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734460388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:33 Heat of formation + Delta-G solvation = 106.810528 kcal Electronic energy + Delta-G solvation = -29082.864091 eV Core-core repulsion = 25010.138760 eV Total energy + Delta-G solvation = -4072.725331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.35681 -40.93440 -40.11175 -38.09396 -36.10278 -35.86503 -34.25960 -34.12011 -32.54385 -31.59272 -31.29185 -30.01589 -28.24822 -26.02101 -25.02026 -24.92474 -23.77704 -23.25112 -22.09885 -21.89467 -20.99068 -19.30605 -18.94777 -18.79278 -17.46253 -17.35002 -17.14620 -16.94769 -16.60550 -16.13724 -15.98027 -15.84603 -15.54664 -15.13178 -14.97142 -14.90656 -14.60882 -14.26840 -14.10241 -13.79947 -13.66594 -13.09639 -13.02083 -12.98536 -12.88852 -12.77882 -12.48112 -12.28370 -12.26845 -12.13200 -12.05401 -11.75221 -11.73508 -11.66414 -11.54454 -11.24231 -11.06182 -10.81221 -10.18263 -9.63285 -9.39573 -8.84122 -7.82824 -5.07561 0.09281 0.64983 0.71733 0.84617 1.24265 1.34589 1.45549 1.47302 1.54877 2.07336 2.61369 3.07656 3.17411 3.45792 3.46852 3.53951 3.91198 3.94901 4.02722 4.02917 4.17326 4.22203 4.30927 4.40681 4.44853 4.61791 4.68692 4.71505 4.77374 4.79433 4.84358 4.89281 4.99563 5.05811 5.12199 5.16739 5.27409 5.37960 5.41931 5.47124 5.54735 5.66379 5.73591 5.82061 6.04660 6.34617 6.37648 6.38972 7.08307 7.29457 7.44817 8.21718 8.43715 9.41319 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.002547 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.934108 B =10991.854954 C =12626.607989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.308 1.308 6 H -0.306 1.306 7 C -0.193 4.193 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.061 0.939 12 C -0.124 4.124 13 C 0.138 3.862 14 N -0.695 5.695 15 C 0.495 3.505 16 O -0.586 6.586 17 C 0.108 3.892 18 N -0.124 5.124 19 N -0.321 5.321 20 C 0.147 3.853 21 N -0.312 5.312 22 N -0.070 5.070 23 C -0.085 4.085 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.241 0.759 31 H 0.366 0.634 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.425 0.575 37 H 0.183 0.817 38 H 0.194 0.806 39 H 0.273 0.727 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.144 0.856 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.588 -12.690 -4.940 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.236 1.236 6 H -0.234 1.234 7 C -0.326 4.326 8 H 0.100 0.900 9 N -0.361 5.361 10 C 0.070 3.930 11 H 0.079 0.921 12 C -0.164 4.164 13 C 0.014 3.986 14 N -0.348 5.348 15 C 0.279 3.721 16 O -0.466 6.466 17 C -0.014 4.014 18 N -0.037 5.037 19 N -0.171 5.171 20 C -0.156 4.156 21 N -0.183 5.183 22 N -0.063 5.063 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.148 4.148 29 C -0.147 4.147 30 H 0.050 0.950 31 H 0.197 0.803 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.263 0.737 37 H 0.200 0.800 38 H 0.211 0.789 39 H 0.289 0.711 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.153 0.847 45 H 0.162 0.838 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.135 -13.102 -4.665 18.458 hybrid contribution -0.565 2.352 -0.051 2.419 sum 11.570 -10.751 -4.716 16.483 Atomic orbital electron populations 1.69814 1.06501 1.24847 1.61024 1.25260 0.95767 1.00085 1.05563 0.85479 0.79019 0.82074 0.75784 1.18335 1.23632 1.23395 1.19344 0.91167 0.84369 1.37678 0.90003 1.42549 1.04958 1.00942 1.87676 1.20374 0.92990 0.87803 0.91876 0.92110 1.22121 0.98222 1.03173 0.92844 1.21101 0.93545 1.00266 0.83716 1.45684 1.11769 1.72969 1.04389 1.20908 0.88585 0.76551 0.86017 1.90827 1.17278 1.51369 1.87145 1.22502 0.90229 1.13121 0.75549 1.49816 1.32417 1.00724 1.20724 1.74731 1.16935 1.17231 1.08178 1.28155 0.98606 0.90525 0.98285 1.75820 1.16014 1.14179 1.12273 1.78885 1.09096 1.14020 1.04339 1.21065 0.96786 1.02402 0.92112 1.19971 0.98290 0.92732 0.96226 1.21140 0.98078 0.98440 0.94969 1.21295 0.99086 0.98528 0.97288 1.21303 1.00904 0.92386 1.01028 1.21379 0.98504 0.98662 0.96273 1.21308 0.98927 0.97491 0.96959 0.94994 0.80333 0.91423 0.88163 0.92911 0.94621 0.73684 0.80008 0.78926 0.71105 0.92329 0.88756 0.88395 0.87033 0.84726 0.83811 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.94 44.63 29.55 68.60 2.03 46.66 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 7 C -0.19 -9.30 7.89 84.03 0.66 -8.64 16 8 H 0.08 3.71 6.64 -2.91 -0.02 3.69 16 9 N -0.72 -31.61 4.14 -322.94 -1.34 -32.95 16 10 C 0.18 5.65 2.67 44.99 0.12 5.77 16 11 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 12 C -0.12 -3.07 4.73 30.59 0.14 -2.93 16 13 C 0.14 4.00 5.56 86.38 0.48 4.48 16 14 N -0.70 -14.14 5.56 -463.08 -2.57 -16.71 16 15 C 0.50 12.19 7.90 87.65 0.69 12.88 16 16 O -0.59 -22.53 16.43 -3.04 -0.05 -22.58 16 17 C 0.11 1.52 7.08 85.63 0.61 2.13 16 18 N -0.12 -2.93 3.49 -191.01 -0.67 -3.60 16 19 N -0.32 -8.08 12.13 -61.09 -0.74 -8.82 16 20 C 0.15 3.25 13.26 180.69 2.40 5.65 16 21 N -0.31 -8.45 12.50 -61.11 -0.76 -9.21 16 22 N -0.07 -1.89 13.25 37.02 0.49 -1.40 16 23 C -0.08 -2.41 4.75 29.85 0.14 -2.27 16 24 C -0.07 -2.31 4.95 -19.87 -0.10 -2.41 16 25 C -0.11 -4.07 9.32 22.27 0.21 -3.86 16 26 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 27 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 28 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 29 C -0.13 -3.45 9.70 22.27 0.22 -3.24 16 30 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.37 18.82 8.02 -92.71 -0.74 18.08 16 32 H 0.07 1.82 7.11 -2.39 -0.02 1.80 16 33 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 36 H 0.42 4.39 8.47 -92.71 -0.79 3.61 16 37 H 0.18 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.19 0.81 8.14 -2.38 -0.02 0.80 16 39 H 0.27 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.06 1.87 7.05 -2.39 -0.02 1.86 16 41 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 42 H 0.10 4.29 7.38 -2.91 -0.02 4.27 16 43 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 44 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 46 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -83.20 394.72 2.87 -80.33 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.51 Total: 33.76 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 6.71 Total: -7.53 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.31 Total: -130.63 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.20 2.87 -80.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.140 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds