Wall clock time and date at job start Wed Apr 1 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00445 * 2 1 4 4 H 1.48494 * 109.47152 * 269.99642 * 3 2 1 5 5 H 1.48507 * 109.47113 * 29.99464 * 3 2 1 6 6 H 1.48496 * 109.47248 * 149.99278 * 3 2 1 7 7 C 1.38810 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00375 * 163.07544 * 7 2 1 9 9 N 1.36944 * 119.99999 * 343.08138 * 7 2 1 10 10 C 1.46921 * 120.63047 * 331.84433 * 9 7 2 11 11 C 1.53198 * 108.77604 * 233.58776 * 10 9 7 12 12 C 1.53041 * 109.30841 * 305.36505 * 11 10 9 13 13 C 1.53007 * 109.45580 * 181.38412 * 12 11 10 14 14 C 1.52996 * 109.46796 * 174.97541 * 13 12 11 15 15 N 1.46510 * 109.46816 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99741 * 179.97438 * 15 14 13 17 17 O 1.21557 * 120.00303 * 359.97438 * 16 15 14 18 18 C 1.47823 * 119.99588 * 180.02562 * 16 15 14 19 19 C 1.41577 * 120.37795 * 359.97438 * 18 16 15 20 20 C 1.34810 * 120.11974 * 180.02562 * 19 18 16 21 21 N 1.36064 * 120.82508 * 359.97438 * 20 19 18 22 22 N 1.40255 * 133.73232 * 179.97438 * 21 20 19 23 23 N 1.28971 * 107.02079 * 180.02562 * 22 21 20 24 24 N 1.28547 * 110.84261 * 0.02562 * 23 22 21 25 25 C 1.32616 * 110.18737 * 359.97438 * 24 23 22 26 26 C 1.38461 * 120.37192 * 180.22485 * 18 16 15 27 27 C 1.53039 * 109.52874 * 61.37299 * 12 11 10 28 28 C 1.46924 * 120.63021 * 151.82313 * 9 7 2 29 29 H 0.97002 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58980 * 113.80074 * 10 9 7 31 31 H 1.09002 * 109.70278 * 353.44636 * 10 9 7 32 32 H 1.08994 * 109.49961 * 185.41138 * 11 10 9 33 33 H 1.09001 * 109.51923 * 65.33027 * 11 10 9 34 34 H 1.08993 * 109.46342 * 301.35670 * 12 11 10 35 35 H 1.08993 * 109.47043 * 54.97136 * 13 12 11 36 36 H 1.08999 * 109.47211 * 294.97142 * 13 12 11 37 37 H 1.08993 * 109.47656 * 59.99970 * 14 13 12 38 38 H 1.09000 * 109.47379 * 299.99524 * 14 13 12 39 39 H 0.97000 * 119.99721 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.93761 * 0.02812 * 19 18 16 41 41 H 1.07999 * 119.59287 * 179.97438 * 20 19 18 42 42 H 1.08000 * 120.51846 * 359.75534 * 26 18 16 43 43 H 1.09001 * 109.49713 * 58.57832 * 27 12 11 44 44 H 1.08998 * 109.50009 * 178.67150 * 27 12 11 45 45 H 1.09002 * 109.58714 * 246.20129 * 28 9 7 46 46 H 1.09007 * 109.58662 * 6.47966 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2717 9 7 1.3698 -2.3623 0.3462 10 6 0.2258 -2.3399 1.2677 11 6 0.4970 -3.3190 2.4143 12 6 0.8115 -4.7007 1.8362 13 6 1.0491 -5.6895 2.9794 14 6 1.2395 -7.0953 2.4064 15 7 1.4664 -8.0422 3.5011 16 6 1.6604 -9.3486 3.2327 17 8 1.6467 -9.7414 2.0824 18 6 1.8887 -10.3041 4.3373 19 6 1.9057 -9.8554 5.6800 20 6 2.1149 -10.7312 6.6832 21 7 2.3116 -12.0527 6.4255 22 7 2.5479 -13.1736 7.2347 23 7 2.6599 -14.1899 6.4486 24 7 2.5205 -13.8359 5.2207 25 6 2.3031 -12.5299 5.1428 26 6 2.0935 -11.6471 4.0701 27 6 2.0671 -4.6171 0.9652 28 6 1.8136 -3.6529 -0.1979 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6773 -2.6404 0.7366 31 1 0.0964 -1.3345 1.6686 32 1 -0.3836 -3.3839 3.0534 33 1 1.3465 -2.9677 3.0000 34 1 -0.0285 -5.0408 1.2306 35 1 0.1894 -5.6835 3.6494 36 1 1.9424 -5.3983 3.5319 37 1 2.0991 -7.1012 1.7364 38 1 0.3462 -7.3866 1.8539 39 1 1.4762 -7.7289 4.4191 40 1 1.7508 -8.8097 5.9008 41 1 2.1266 -10.3797 7.7043 42 1 2.0848 -12.0116 3.0535 43 1 2.9019 -4.2533 1.5643 44 1 2.3042 -5.6060 0.5728 45 1 1.0400 -4.0605 -0.8487 46 1 2.7330 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753597938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:21 Heat of formation + Delta-G solvation = 127.422892 kcal Electronic energy + Delta-G solvation = -28486.291616 eV Core-core repulsion = 24414.460104 eV Total energy + Delta-G solvation = -4071.831512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.97278 -40.67007 -38.85641 -38.06921 -35.75473 -34.61311 -33.82658 -32.77338 -31.32662 -31.14486 -30.05776 -28.80250 -26.34388 -25.39162 -24.83233 -23.45335 -23.19044 -22.13789 -21.51830 -20.83383 -19.30506 -19.12940 -18.64605 -17.65429 -17.46467 -16.81063 -16.27069 -15.92125 -15.74215 -15.33906 -14.87328 -14.53619 -14.35476 -14.03571 -13.87932 -13.65516 -13.55005 -13.42771 -13.06702 -12.92721 -12.71157 -12.62887 -12.32428 -12.13261 -11.71309 -11.63260 -11.43440 -11.30957 -10.97377 -10.84042 -10.74086 -10.69185 -10.48539 -10.23743 -10.21148 -9.90473 -9.59794 -9.50178 -9.38731 -9.28262 -8.48969 -6.67787 -5.81149 -3.23215 -0.59799 -0.26162 1.05270 1.46348 1.92346 2.36521 2.75565 3.07852 3.34729 3.40230 3.41960 3.43966 3.60362 3.85499 4.17123 4.22125 4.47516 4.59843 4.74309 4.77518 4.90025 4.94481 5.01094 5.15472 5.24048 5.32201 5.39114 5.48860 5.60966 5.64340 5.66190 5.84405 5.91000 5.95273 6.09761 6.16851 6.31832 6.48856 6.58212 6.65256 6.77192 6.81355 6.91742 6.97997 7.34615 7.58569 7.63515 7.75532 7.77362 8.43536 9.19934 9.83624 10.40446 11.27354 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.001585 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.745601 B =17659.398146 C =17933.519596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.126 4.126 14 C 0.114 3.886 15 N -0.715 5.715 16 C 0.556 3.444 17 O -0.517 6.517 18 C -0.069 4.069 19 C -0.116 4.116 20 C 0.110 3.890 21 N -0.296 5.296 22 N -0.106 5.106 23 N -0.006 5.006 24 N -0.311 5.311 25 C 0.237 3.763 26 C -0.022 4.022 27 C -0.130 4.130 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.173 0.827 41 H 0.189 0.811 42 H 0.182 0.818 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -19.004 14.738 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.164 4.164 14 C -0.008 4.008 15 N -0.367 5.367 16 C 0.341 3.659 17 O -0.392 6.392 18 C -0.081 4.081 19 C -0.140 4.140 20 C -0.017 4.017 21 N -0.076 5.076 22 N -0.089 5.089 23 N 0.001 4.999 24 N -0.171 5.171 25 C -0.017 4.017 26 C -0.046 4.046 27 C -0.169 4.169 28 C 0.017 3.983 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.190 0.810 41 H 0.206 0.794 42 H 0.200 0.800 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.091 -20.559 14.657 25.335 hybrid contribution 0.217 1.970 0.326 2.009 sum 2.308 -18.589 14.983 23.987 Atomic orbital electron populations 1.70031 1.05258 1.25447 1.54054 1.25036 0.95271 0.98382 1.00995 0.86326 0.79150 0.83735 0.77746 1.21395 1.21578 1.20540 1.19177 0.92519 0.84884 1.41562 0.91802 1.44047 1.35888 1.01517 1.50075 1.20756 0.88631 0.98142 0.88030 1.22221 0.99893 0.95323 0.99890 1.20978 0.98595 0.94827 0.95015 1.21931 1.02126 0.92839 0.99515 1.21702 1.02667 0.87679 0.88731 1.45989 1.72128 1.07080 1.11462 1.17750 0.78031 0.82326 0.87786 1.90876 1.49589 1.78027 1.20757 1.20383 0.99611 0.93921 0.94173 1.21208 1.01138 1.01215 0.90396 1.21598 0.98974 0.78248 1.02862 1.49080 1.41931 1.09222 1.07415 1.82848 1.26560 0.86147 1.13338 1.77926 1.06913 1.19356 0.95708 1.75289 1.23638 1.06782 1.11380 1.22779 1.00157 0.92309 0.86446 1.20824 0.95462 0.89611 0.98664 1.22125 0.97032 0.98928 0.98839 1.20901 0.97546 0.86989 0.92831 0.93673 0.96554 0.89594 0.93445 0.92742 0.91576 0.91592 0.91395 0.90320 0.90844 0.76451 0.81017 0.79351 0.80031 0.92398 0.93070 0.96576 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.19 29.59 -169.99 -5.03 16.17 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.74 9.58 -15.06 -0.14 -6.89 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.27 2.99 -172.32 -0.52 -14.79 16 10 C 0.17 3.84 5.30 -3.71 -0.02 3.82 16 11 C -0.13 -2.25 5.36 -26.61 -0.14 -2.39 16 12 C -0.07 -1.04 2.15 -90.57 -0.19 -1.24 16 13 C -0.13 -1.18 4.80 -26.73 -0.13 -1.31 16 14 C 0.11 1.02 5.43 -4.04 -0.02 1.00 16 15 N -0.72 -4.54 5.51 -61.25 -0.34 -4.88 16 16 C 0.56 4.46 7.78 -12.34 -0.10 4.36 16 17 O -0.52 -6.28 16.37 5.32 0.09 -6.19 16 18 C -0.07 -0.38 5.90 -104.62 -0.62 -1.00 16 19 C -0.12 -0.27 9.48 -39.53 -0.37 -0.65 16 20 C 0.11 0.36 11.19 -16.89 -0.19 0.17 16 21 N -0.30 -2.28 3.94 -12.43 -0.05 -2.33 16 22 N -0.11 -1.09 13.98 60.35 0.84 -0.24 16 23 N -0.01 -0.07 13.35 60.35 0.81 0.73 16 24 N -0.31 -3.55 12.27 31.03 0.38 -3.16 16 25 C 0.24 2.10 8.02 -156.36 -1.25 0.85 16 26 C -0.02 -0.15 9.70 -38.65 -0.37 -0.53 16 27 C -0.13 -2.00 5.14 -26.61 -0.14 -2.14 16 28 C 0.14 2.87 6.52 -3.71 -0.02 2.84 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.20 6.07 -51.93 -0.31 1.88 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.81 6.53 -51.93 -0.34 0.47 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 1.17 6.54 -40.82 -0.27 0.90 16 40 H 0.17 -0.22 6.46 -52.49 -0.34 -0.56 16 41 H 0.19 -0.04 8.06 -52.49 -0.42 -0.46 16 42 H 0.18 1.21 7.67 -52.49 -0.40 0.81 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.68 6.50 -51.93 -0.34 0.34 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -34.36 377.03 -7.50 -41.86 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -6.19 Total: -4.66 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.80 Total: -3.14 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 1.75 Total: -49.72 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.09 Total: -6.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.36 -7.50 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.285 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds