Wall clock time and date at job start Wed Apr 1 2020 04:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00445 * 2 1 4 4 H 1.48494 * 109.47152 * 269.99642 * 3 2 1 5 5 H 1.48507 * 109.47113 * 29.99464 * 3 2 1 6 6 H 1.48496 * 109.47248 * 149.99278 * 3 2 1 7 7 C 1.38810 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00375 * 163.07544 * 7 2 1 9 9 N 1.36944 * 119.99999 * 343.08138 * 7 2 1 10 10 C 1.46921 * 120.63047 * 331.84433 * 9 7 2 11 11 C 1.53198 * 108.77604 * 233.58776 * 10 9 7 12 12 C 1.53041 * 109.30841 * 305.36505 * 11 10 9 13 13 C 1.53007 * 109.45580 * 181.38412 * 12 11 10 14 14 C 1.52996 * 109.46796 * 174.97541 * 13 12 11 15 15 N 1.46510 * 109.46816 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99741 * 179.97438 * 15 14 13 17 17 O 1.21557 * 120.00303 * 359.97438 * 16 15 14 18 18 C 1.47823 * 119.99588 * 180.02562 * 16 15 14 19 19 C 1.41577 * 120.37795 * 359.97438 * 18 16 15 20 20 C 1.34810 * 120.11974 * 180.02562 * 19 18 16 21 21 N 1.36064 * 120.82508 * 359.97438 * 20 19 18 22 22 N 1.40255 * 133.73232 * 179.97438 * 21 20 19 23 23 N 1.28971 * 107.02079 * 180.02562 * 22 21 20 24 24 N 1.28547 * 110.84261 * 0.02562 * 23 22 21 25 25 C 1.32616 * 110.18737 * 359.97438 * 24 23 22 26 26 C 1.38461 * 120.37192 * 180.22485 * 18 16 15 27 27 C 1.53039 * 109.52874 * 61.37299 * 12 11 10 28 28 C 1.46924 * 120.63021 * 151.82313 * 9 7 2 29 29 H 0.97002 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58980 * 113.80074 * 10 9 7 31 31 H 1.09002 * 109.70278 * 353.44636 * 10 9 7 32 32 H 1.08994 * 109.49961 * 185.41138 * 11 10 9 33 33 H 1.09001 * 109.51923 * 65.33027 * 11 10 9 34 34 H 1.08993 * 109.46342 * 301.35670 * 12 11 10 35 35 H 1.08993 * 109.47043 * 54.97136 * 13 12 11 36 36 H 1.08999 * 109.47211 * 294.97142 * 13 12 11 37 37 H 1.08993 * 109.47656 * 59.99970 * 14 13 12 38 38 H 1.09000 * 109.47379 * 299.99524 * 14 13 12 39 39 H 0.97000 * 119.99721 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.93761 * 0.02812 * 19 18 16 41 41 H 1.07999 * 119.59287 * 179.97438 * 20 19 18 42 42 H 1.08000 * 120.51846 * 359.75534 * 26 18 16 43 43 H 1.09001 * 109.49713 * 58.57832 * 27 12 11 44 44 H 1.08998 * 109.50009 * 178.67150 * 27 12 11 45 45 H 1.09002 * 109.58714 * 246.20129 * 28 9 7 46 46 H 1.09007 * 109.58662 * 6.47966 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2717 9 7 1.3698 -2.3623 0.3462 10 6 0.2258 -2.3399 1.2677 11 6 0.4970 -3.3190 2.4143 12 6 0.8115 -4.7007 1.8362 13 6 1.0491 -5.6895 2.9794 14 6 1.2395 -7.0953 2.4064 15 7 1.4664 -8.0422 3.5011 16 6 1.6604 -9.3486 3.2327 17 8 1.6467 -9.7414 2.0824 18 6 1.8887 -10.3041 4.3373 19 6 1.9057 -9.8554 5.6800 20 6 2.1149 -10.7312 6.6832 21 7 2.3116 -12.0527 6.4255 22 7 2.5479 -13.1736 7.2347 23 7 2.6599 -14.1899 6.4486 24 7 2.5205 -13.8359 5.2207 25 6 2.3031 -12.5299 5.1428 26 6 2.0935 -11.6471 4.0701 27 6 2.0671 -4.6171 0.9652 28 6 1.8136 -3.6529 -0.1979 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6773 -2.6404 0.7366 31 1 0.0964 -1.3345 1.6686 32 1 -0.3836 -3.3839 3.0534 33 1 1.3465 -2.9677 3.0000 34 1 -0.0285 -5.0408 1.2306 35 1 0.1894 -5.6835 3.6494 36 1 1.9424 -5.3983 3.5319 37 1 2.0991 -7.1012 1.7364 38 1 0.3462 -7.3866 1.8539 39 1 1.4762 -7.7289 4.4191 40 1 1.7508 -8.8097 5.9008 41 1 2.1266 -10.3797 7.7043 42 1 2.0848 -12.0116 3.0535 43 1 2.9019 -4.2533 1.5643 44 1 2.3042 -5.6060 0.5728 45 1 1.0400 -4.0605 -0.8487 46 1 2.7330 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753597938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:20 Heat of formation + Delta-G solvation = 103.764495 kcal Electronic energy + Delta-G solvation = -28487.317521 eV Core-core repulsion = 24414.460104 eV Total energy + Delta-G solvation = -4072.857417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.58038 -41.29374 -39.62484 -39.21687 -36.77692 -35.25326 -35.10186 -33.52895 -32.85380 -31.66897 -31.53183 -30.07539 -27.39277 -26.10738 -25.92908 -24.44857 -23.99659 -23.55012 -22.23423 -22.05856 -20.60774 -19.84798 -19.18512 -18.67699 -18.08600 -18.08044 -16.95476 -16.78403 -16.61686 -16.26470 -15.91502 -15.60119 -15.35706 -15.25008 -14.97731 -14.82493 -14.48744 -14.32295 -14.20782 -13.93311 -13.82795 -13.68163 -13.11501 -12.99772 -12.91428 -12.77143 -12.74999 -12.51410 -12.29824 -12.24539 -12.08989 -11.90243 -11.76005 -11.53380 -11.34372 -11.30939 -10.94889 -10.92822 -10.50308 -10.15142 -9.80282 -8.62859 -7.85008 -5.30021 -1.09845 -0.74704 0.58372 0.88685 1.33629 1.47249 1.48487 1.58166 1.76298 2.22965 2.53003 2.55513 2.87475 3.23365 3.29379 3.44514 3.71437 3.77189 3.85740 3.95412 4.01449 4.05776 4.18592 4.32494 4.37935 4.50019 4.52069 4.63985 4.67123 4.73698 4.81140 4.83758 4.86043 4.96305 5.08429 5.09988 5.17691 5.22198 5.33878 5.37324 5.43502 5.48205 5.54631 5.61042 5.71783 5.87205 6.40840 6.42428 7.05499 7.08408 7.18781 7.91709 8.42126 9.20681 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.001585 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.745601 B =17659.398146 C =17933.519596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.109 4.109 14 C 0.119 3.881 15 N -0.696 5.696 16 C 0.558 3.442 17 O -0.563 6.563 18 C -0.054 4.054 19 C -0.091 4.091 20 C 0.111 3.889 21 N -0.293 5.293 22 N -0.123 5.123 23 N -0.032 5.032 24 N -0.346 5.346 25 C 0.226 3.774 26 C -0.037 4.037 27 C -0.117 4.117 28 C 0.135 3.865 29 H 0.249 0.751 30 H -0.010 1.010 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.421 0.579 40 H 0.222 0.778 41 H 0.232 0.768 42 H 0.175 0.825 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 -18.327 17.366 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.147 4.147 14 C -0.004 4.004 15 N -0.348 5.348 16 C 0.344 3.656 17 O -0.442 6.442 18 C -0.066 4.066 19 C -0.114 4.114 20 C -0.015 4.015 21 N -0.073 5.073 22 N -0.106 5.106 23 N -0.025 5.025 24 N -0.207 5.207 25 C -0.027 4.027 26 C -0.061 4.061 27 C -0.156 4.156 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.261 0.739 40 H 0.239 0.761 41 H 0.249 0.751 42 H 0.192 0.808 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.706 -19.893 17.329 26.521 hybrid contribution -0.014 1.910 -0.593 2.000 sum 2.693 -17.983 16.736 24.713 Atomic orbital electron populations 1.70190 1.06648 1.25735 1.55625 1.25777 0.96020 1.01429 1.01469 0.85319 0.78163 0.79732 0.77489 1.21422 1.21796 1.19457 1.19509 0.92749 0.86248 1.40742 0.91894 1.44342 1.36037 1.02201 1.50939 1.20633 0.87414 0.97888 0.89415 1.22008 1.00969 0.95282 0.97622 1.20893 0.97451 0.94391 0.96357 1.21718 1.04020 0.91219 0.97739 1.21476 1.01758 0.87945 0.89202 1.45723 1.70944 1.06050 1.12115 1.17979 0.77213 0.82857 0.87542 1.90872 1.51659 1.78837 1.22847 1.20289 0.98633 0.92582 0.95100 1.21730 0.98445 1.03178 0.88079 1.22556 0.97345 0.76296 1.05294 1.49234 1.41307 1.10229 1.06566 1.82700 1.27527 0.86713 1.13668 1.77868 1.08115 1.20455 0.96087 1.75150 1.25272 1.08687 1.11640 1.22785 1.00715 0.91843 0.87319 1.20777 0.96963 0.90289 0.98058 1.21978 0.97872 0.98616 0.97149 1.21103 0.96717 0.86441 0.94752 0.94193 0.99223 0.93268 0.90991 0.92726 0.92314 0.89132 0.89743 0.91572 0.91870 0.73934 0.76115 0.75148 0.80759 0.92337 0.90479 0.97529 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.74 11.19 21.65 0.24 -54.49 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 3 Si 0.96 44.07 29.59 68.60 2.03 46.10 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.26 -14.23 9.58 84.03 0.81 -13.42 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -29.82 2.99 -699.09 -2.09 -31.91 16 10 C 0.17 7.87 5.30 86.37 0.46 8.32 16 11 C -0.12 -3.76 5.36 30.67 0.16 -3.60 16 12 C -0.07 -1.78 2.15 -10.76 -0.02 -1.80 16 13 C -0.11 -1.49 4.80 30.60 0.15 -1.34 16 14 C 0.12 1.66 5.43 86.38 0.47 2.13 16 15 N -0.70 -5.48 5.51 -465.98 -2.57 -8.05 16 16 C 0.56 7.21 7.78 86.78 0.67 7.89 16 17 O -0.56 -12.96 16.37 -3.90 -0.06 -13.02 16 18 C -0.05 -0.43 5.90 -19.86 -0.12 -0.55 16 19 C -0.09 0.06 9.48 22.31 0.21 0.28 16 20 C 0.11 0.23 11.19 83.25 0.93 1.16 16 21 N -0.29 -3.98 3.94 -193.24 -0.76 -4.74 16 22 N -0.12 -2.47 13.98 37.02 0.52 -1.95 16 23 N -0.03 -0.80 13.35 37.02 0.49 -0.31 16 24 N -0.35 -8.26 12.27 -55.73 -0.68 -8.94 16 25 C 0.23 3.93 8.02 134.05 1.07 5.00 16 26 C -0.04 -0.48 9.70 22.87 0.22 -0.26 16 27 C -0.12 -3.34 5.14 30.67 0.16 -3.18 16 28 C 0.14 5.38 6.52 86.36 0.56 5.94 16 29 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.13 6.53 -2.39 -0.02 1.12 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.42 -0.37 6.54 -92.71 -0.61 -0.98 16 40 H 0.22 -2.36 6.46 -2.91 -0.02 -2.38 16 41 H 0.23 -1.51 8.06 -2.91 -0.02 -1.53 16 42 H 0.18 2.46 7.67 -2.91 -0.02 2.44 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.82 6.50 -2.39 -0.02 1.81 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.05 1.84 7.93 -2.38 -0.02 1.82 16 Total: -1.00 -81.88 377.03 3.69 -78.20 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: 0.42 Total: -5.01 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.16 Total: 4.13 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -4.85 Total: -110.38 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.06 Total: -13.02 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -81.88 3.69 -78.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.961 kcal (2) G-P(sol) polarization free energy of solvation -81.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds