Wall clock time and date at job start Wed Apr 1 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99897 * 2 1 4 4 H 1.48503 * 109.46967 * 269.99937 * 3 2 1 5 5 H 1.48496 * 109.47026 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.46971 * 150.00070 * 3 2 1 7 7 C 1.38807 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00246 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00132 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47103 * 185.15156 * 11 10 9 13 13 H 1.08993 * 109.58634 * 60.09570 * 12 11 10 14 14 C 1.53196 * 109.58276 * 299.80961 * 12 11 10 15 15 C 1.53042 * 109.30933 * 185.57580 * 14 12 11 16 16 C 1.53043 * 109.53562 * 61.37325 * 15 14 12 17 17 C 1.53194 * 109.30879 * 298.63128 * 16 15 14 18 18 N 1.46922 * 109.58429 * 180.52420 * 12 11 10 19 19 C 1.34769 * 120.63392 * 353.41681 * 18 12 11 20 20 O 1.21547 * 120.00424 * 5.06445 * 19 18 12 21 21 C 1.47877 * 120.00282 * 185.06978 * 19 18 12 22 22 C 1.39457 * 121.11652 * 38.11191 * 21 19 18 23 23 C 1.38607 * 119.37563 * 180.02562 * 22 21 19 24 24 N 1.31586 * 121.64165 * 359.97438 * 23 22 21 25 25 C 1.32208 * 121.86533 * 0.02809 * 24 23 22 26 26 N 1.37211 * 134.67867 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.86557 * 359.96339 * 26 25 24 28 28 N 1.28775 * 108.26190 * 179.97438 * 26 25 24 29 29 N 1.28690 * 111.76171 * 359.97438 * 28 26 25 30 30 C 1.34396 * 109.14895 * 359.74150 * 29 28 26 31 31 H 0.96997 * 120.00038 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00212 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47581 * 59.99543 * 10 9 7 34 34 H 1.09001 * 109.47082 * 299.99374 * 10 9 7 35 35 H 1.08992 * 109.47215 * 65.14852 * 11 10 9 36 36 H 1.08999 * 109.46644 * 305.14617 * 11 10 9 37 37 H 1.08997 * 109.50041 * 305.53306 * 14 12 11 38 38 H 1.08999 * 109.49599 * 65.63380 * 14 12 11 39 39 H 1.09005 * 109.45600 * 181.38396 * 15 14 12 40 40 H 1.08992 * 109.46541 * 301.34940 * 15 14 12 41 41 H 1.08997 * 109.49911 * 178.68136 * 16 15 14 42 42 H 1.08996 * 109.52708 * 58.59709 * 16 15 14 43 43 H 1.09002 * 109.58385 * 294.84549 * 17 16 15 44 44 H 1.09000 * 109.58386 * 174.42700 * 17 16 15 45 45 H 1.07996 * 120.30923 * 359.97438 * 22 21 19 46 46 H 1.08007 * 119.18168 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 6 1.8244 -6.1410 0.1273 13 1 2.3878 -6.1484 1.0603 14 6 2.7862 -6.2978 -1.0547 15 6 3.4408 -7.6799 -0.9947 16 6 2.3634 -8.7615 -1.1020 17 6 1.3967 -8.6326 0.0795 18 7 0.8728 -7.2603 0.1143 19 6 -0.4554 -7.0327 0.1335 20 8 -0.8781 -5.8950 0.0688 21 6 -1.3986 -8.1672 0.2333 22 6 -1.1163 -9.2706 1.0382 23 6 -2.0259 -10.3143 1.1046 24 7 -3.1533 -10.2916 0.4264 25 6 -3.4783 -9.2748 -0.3536 26 7 -4.5508 -8.9793 -1.1568 27 1 -5.3306 -9.5399 -1.2926 28 7 -4.3440 -7.8299 -1.6994 29 7 -3.2205 -7.3229 -1.3295 30 6 -2.6153 -8.1671 -0.4767 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6841 -3.7150 0.8887 34 1 2.6854 -3.7142 -0.8912 35 1 0.4999 -4.8151 -0.9349 36 1 0.3778 -4.7116 0.8378 37 1 2.2340 -6.1970 -1.9890 38 1 3.5562 -5.5281 -1.0018 39 1 4.1441 -7.7848 -1.8208 40 1 3.9723 -7.7893 -0.0494 41 1 2.8323 -9.7453 -1.0827 42 1 1.8150 -8.6381 -2.0358 43 1 1.9250 -8.8457 1.0087 44 1 0.5727 -9.3353 -0.0443 45 1 -0.1971 -9.3117 1.6037 46 1 -1.8043 -11.1670 1.7292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753781863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:00 Heat of formation + Delta-G solvation = 130.911972 kcal Electronic energy + Delta-G solvation = -30361.187447 eV Core-core repulsion = 26289.507233 eV Total energy + Delta-G solvation = -4071.680214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.74579 -40.87432 -39.24416 -37.46594 -35.33996 -34.49416 -33.41439 -32.77224 -31.79577 -31.21518 -30.49588 -27.92122 -26.25812 -24.86917 -24.37678 -24.05722 -23.46182 -22.29402 -21.29503 -20.66587 -20.01340 -19.08005 -18.33561 -17.47402 -16.95100 -16.80590 -16.14206 -15.76060 -15.50150 -15.32086 -14.75359 -14.62254 -14.32250 -13.89040 -13.63293 -13.54569 -13.50378 -13.14128 -13.06763 -12.91120 -12.66896 -12.61630 -12.13584 -11.95705 -11.88184 -11.42744 -11.29443 -11.09883 -10.89525 -10.78071 -10.76010 -10.41736 -10.34180 -10.15177 -9.91460 -9.61042 -9.54713 -9.43042 -8.88864 -8.73029 -8.54904 -6.73876 -5.59947 -2.88360 -0.26433 0.45539 1.77832 1.88924 2.54428 2.69252 3.19636 3.36294 3.52848 3.56710 3.59374 3.83171 3.93747 4.09860 4.34552 4.49020 4.64183 4.68409 4.72354 4.75539 4.93477 5.00027 5.08043 5.13671 5.19596 5.28632 5.35998 5.53666 5.57739 5.70056 5.73178 5.75009 5.78179 5.95116 5.97981 6.14273 6.22109 6.26698 6.40079 6.42086 6.60267 6.67842 7.05990 7.12189 7.19059 7.30909 7.82548 7.83960 8.10785 8.58779 9.69116 10.31640 10.66292 11.62878 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.002961 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.798446 B = 9453.513957 C =11221.929027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.149 3.851 11 C -0.116 4.116 12 C 0.155 3.845 13 H 0.076 0.924 14 C -0.134 4.134 15 C -0.120 4.120 16 C -0.136 4.136 17 C 0.093 3.907 18 N -0.601 5.601 19 C 0.548 3.452 20 O -0.475 6.475 21 C 0.002 3.998 22 C -0.152 4.152 23 C 0.160 3.840 24 N -0.462 5.462 25 C 0.215 3.785 26 N -0.406 5.406 27 H 0.458 0.542 28 N 0.007 4.993 29 N -0.210 5.210 30 C 0.000 4.000 31 H 0.254 0.746 32 H 0.386 0.614 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.163 0.837 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -31.541 1.326 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.021 3.979 11 C -0.154 4.154 12 C 0.053 3.947 13 H 0.094 0.906 14 C -0.173 4.173 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.030 4.030 18 N -0.335 5.335 19 C 0.333 3.667 20 O -0.347 6.347 21 C -0.015 4.015 22 C -0.176 4.176 23 C -0.012 4.012 24 N -0.176 5.176 25 C -0.028 4.028 26 N -0.137 5.137 27 H 0.306 0.694 28 N 0.024 4.976 29 N -0.087 5.087 30 C -0.129 4.129 31 H 0.064 0.936 32 H 0.220 0.780 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.181 0.819 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.196 -30.280 0.336 30.361 hybrid contribution 0.535 0.313 0.505 0.799 sum -1.661 -29.967 0.841 30.025 Atomic orbital electron populations 1.69688 1.05047 1.25411 1.57837 1.24752 0.95496 0.97589 1.03398 0.86208 0.78570 0.84106 0.77429 1.21831 1.21855 1.20866 1.19232 0.90904 0.84316 1.42366 0.91352 1.42365 1.06104 0.99862 1.89194 1.20783 0.93630 0.86408 0.97094 1.22260 0.97473 0.90739 1.04897 1.21393 0.89243 0.85834 0.98266 0.90606 1.22078 0.99118 0.97120 0.98946 1.21542 0.97391 0.94643 1.02194 1.21930 0.97352 0.99485 0.98619 1.22181 0.98277 0.83290 0.99250 1.48031 1.04734 1.07502 1.73250 1.17982 0.82008 0.88046 0.78651 1.91058 1.77210 1.20710 1.45718 1.19810 0.92018 0.95023 0.94653 1.22548 1.02174 0.93044 0.99797 1.22833 0.86526 0.97857 0.93989 1.66310 1.19741 1.24674 1.06857 1.19856 0.90537 0.94322 0.98119 1.44736 1.18215 1.16773 1.33935 0.69425 1.78297 1.12573 0.92873 1.13863 1.75604 0.99844 1.22317 1.10886 1.20150 0.97099 0.94064 1.01606 0.93616 0.78012 0.97059 0.96670 0.90588 0.89729 0.91285 0.89752 0.91668 0.91695 0.90753 0.91502 0.90701 0.89277 0.81939 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.18 13.06 55.49 0.72 -29.46 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.53 29.55 -169.99 -5.02 18.51 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -20.46 5.60 -59.91 -0.34 -20.79 16 10 C 0.15 3.26 5.77 -4.04 -0.02 3.23 16 11 C -0.12 -2.19 3.25 -26.73 -0.09 -2.28 16 12 C 0.15 2.10 3.02 -67.60 -0.20 1.90 16 13 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.61 4.85 -26.61 -0.13 -1.73 16 15 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 16 C -0.14 -0.97 6.08 -26.61 -0.16 -1.14 16 17 C 0.09 0.66 4.90 -3.71 -0.02 0.64 16 18 N -0.60 -7.06 2.97 -166.32 -0.49 -7.55 16 19 C 0.55 7.99 7.32 -12.32 -0.09 7.90 16 20 O -0.47 -9.31 12.34 5.32 0.07 -9.24 16 21 C 0.00 0.02 5.24 -104.50 -0.55 -0.53 16 22 C -0.15 -1.04 7.47 -38.99 -0.29 -1.33 16 23 C 0.16 0.92 11.14 -17.52 -0.20 0.72 16 24 N -0.46 -3.99 10.35 -12.39 -0.13 -4.12 16 25 C 0.22 2.31 8.56 -156.21 -1.34 0.97 16 26 N -0.41 -3.78 7.06 31.11 0.22 -3.56 16 27 H 0.46 2.23 8.96 -190.26 -1.71 0.52 16 28 N 0.01 0.09 13.29 60.35 0.80 0.89 16 29 N -0.21 -3.36 12.42 32.23 0.40 -2.96 16 30 C 0.00 0.00 7.02 -84.72 -0.59 -0.60 16 31 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 32 H 0.39 11.64 7.67 -40.82 -0.31 11.33 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 35 H 0.08 1.62 7.01 -51.93 -0.36 1.26 16 36 H 0.08 1.80 6.47 -51.93 -0.34 1.46 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.05 6.89 -51.93 -0.36 0.69 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.09 0.51 4.56 -51.93 -0.24 0.27 16 45 H 0.16 0.61 6.41 -52.49 -0.34 0.28 16 46 H 0.18 0.24 8.06 -52.48 -0.42 -0.18 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -39.53 368.11 -9.66 -49.19 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.36 Total: 4.80 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.08 Total: -1.25 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 1.19 Total: -67.55 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.53 -9.66 -49.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753781863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.100 kcal (2) G-P(sol) polarization free energy of solvation -39.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds