Wall clock time and date at job start Wed Apr 1 2020 04:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99897 * 2 1 4 4 H 1.48503 * 109.46967 * 269.99937 * 3 2 1 5 5 H 1.48496 * 109.47026 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.46971 * 150.00070 * 3 2 1 7 7 C 1.38807 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00246 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00132 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47103 * 185.15156 * 11 10 9 13 13 H 1.08993 * 109.58634 * 60.09570 * 12 11 10 14 14 C 1.53196 * 109.58276 * 299.80961 * 12 11 10 15 15 C 1.53042 * 109.30933 * 185.57580 * 14 12 11 16 16 C 1.53043 * 109.53562 * 61.37325 * 15 14 12 17 17 C 1.53194 * 109.30879 * 298.63128 * 16 15 14 18 18 N 1.46922 * 109.58429 * 180.52420 * 12 11 10 19 19 C 1.34769 * 120.63392 * 353.41681 * 18 12 11 20 20 O 1.21547 * 120.00424 * 5.06445 * 19 18 12 21 21 C 1.47877 * 120.00282 * 185.06978 * 19 18 12 22 22 C 1.39457 * 121.11652 * 38.11191 * 21 19 18 23 23 C 1.38607 * 119.37563 * 180.02562 * 22 21 19 24 24 N 1.31586 * 121.64165 * 359.97438 * 23 22 21 25 25 C 1.32208 * 121.86533 * 0.02809 * 24 23 22 26 26 N 1.37211 * 134.67867 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.86557 * 359.96339 * 26 25 24 28 28 N 1.28775 * 108.26190 * 179.97438 * 26 25 24 29 29 N 1.28690 * 111.76171 * 359.97438 * 28 26 25 30 30 C 1.34396 * 109.14895 * 359.74150 * 29 28 26 31 31 H 0.96997 * 120.00038 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00212 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47581 * 59.99543 * 10 9 7 34 34 H 1.09001 * 109.47082 * 299.99374 * 10 9 7 35 35 H 1.08992 * 109.47215 * 65.14852 * 11 10 9 36 36 H 1.08999 * 109.46644 * 305.14617 * 11 10 9 37 37 H 1.08997 * 109.50041 * 305.53306 * 14 12 11 38 38 H 1.08999 * 109.49599 * 65.63380 * 14 12 11 39 39 H 1.09005 * 109.45600 * 181.38396 * 15 14 12 40 40 H 1.08992 * 109.46541 * 301.34940 * 15 14 12 41 41 H 1.08997 * 109.49911 * 178.68136 * 16 15 14 42 42 H 1.08996 * 109.52708 * 58.59709 * 16 15 14 43 43 H 1.09002 * 109.58385 * 294.84549 * 17 16 15 44 44 H 1.09000 * 109.58386 * 174.42700 * 17 16 15 45 45 H 1.07996 * 120.30923 * 359.97438 * 22 21 19 46 46 H 1.08007 * 119.18168 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 6 1.8244 -6.1410 0.1273 13 1 2.3878 -6.1484 1.0603 14 6 2.7862 -6.2978 -1.0547 15 6 3.4408 -7.6799 -0.9947 16 6 2.3634 -8.7615 -1.1020 17 6 1.3967 -8.6326 0.0795 18 7 0.8728 -7.2603 0.1143 19 6 -0.4554 -7.0327 0.1335 20 8 -0.8781 -5.8950 0.0688 21 6 -1.3986 -8.1672 0.2333 22 6 -1.1163 -9.2706 1.0382 23 6 -2.0259 -10.3143 1.1046 24 7 -3.1533 -10.2916 0.4264 25 6 -3.4783 -9.2748 -0.3536 26 7 -4.5508 -8.9793 -1.1568 27 1 -5.3306 -9.5399 -1.2926 28 7 -4.3440 -7.8299 -1.6994 29 7 -3.2205 -7.3229 -1.3295 30 6 -2.6153 -8.1671 -0.4767 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6841 -3.7150 0.8887 34 1 2.6854 -3.7142 -0.8912 35 1 0.4999 -4.8151 -0.9349 36 1 0.3778 -4.7116 0.8378 37 1 2.2340 -6.1970 -1.9890 38 1 3.5562 -5.5281 -1.0018 39 1 4.1441 -7.7848 -1.8208 40 1 3.9723 -7.7893 -0.0494 41 1 2.8323 -9.7453 -1.0827 42 1 1.8150 -8.6381 -2.0358 43 1 1.9250 -8.8457 1.0087 44 1 0.5727 -9.3353 -0.0443 45 1 -0.1971 -9.3117 1.6037 46 1 -1.8043 -11.1670 1.7292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753781863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:59 Heat of formation + Delta-G solvation = 99.618868 kcal Electronic energy + Delta-G solvation = -30362.544418 eV Core-core repulsion = 26289.507233 eV Total energy + Delta-G solvation = -4073.037185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.57250 -41.84978 -39.99819 -38.47967 -37.01577 -35.54886 -34.63789 -33.99767 -32.89575 -32.13251 -31.92525 -29.33007 -27.32338 -26.02672 -25.41434 -24.94528 -24.71160 -23.66554 -22.21362 -22.08115 -20.85680 -19.91650 -19.21522 -19.12257 -18.14880 -17.78639 -17.20120 -16.66954 -16.61330 -16.37106 -16.08317 -15.66900 -15.46737 -15.31065 -14.98626 -14.69540 -14.40667 -14.31645 -14.24678 -13.95628 -13.85991 -13.52763 -13.31666 -12.97882 -12.85614 -12.79579 -12.75080 -12.71325 -12.31426 -12.12897 -11.92222 -11.86643 -11.75734 -11.53045 -11.39198 -10.95088 -10.92604 -10.33716 -10.29141 -10.06476 -9.56141 -9.01734 -7.94472 -5.25893 -1.02936 -0.21239 0.96213 1.10586 1.43880 1.48608 1.56994 1.59604 1.80767 2.43812 2.55208 2.64117 3.07781 3.25351 3.33104 3.37617 3.68756 3.76675 3.84548 3.93066 4.06982 4.13118 4.15970 4.27999 4.30471 4.33735 4.43828 4.51250 4.58884 4.71693 4.73957 4.74919 4.81532 4.93707 4.97554 5.12249 5.19192 5.20162 5.27622 5.39771 5.41144 5.49322 5.53062 5.63826 5.69144 6.25836 6.32948 6.41463 6.96974 7.09156 7.30073 8.07678 8.31866 9.29900 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.002961 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.798446 B = 9453.513957 C =11221.929027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.085 4.085 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.751 5.751 10 C 0.149 3.851 11 C -0.093 4.093 12 C 0.161 3.839 13 H 0.099 0.901 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.084 3.916 18 N -0.594 5.594 19 C 0.540 3.460 20 O -0.547 6.547 21 C -0.034 4.034 22 C -0.115 4.115 23 C 0.181 3.819 24 N -0.463 5.463 25 C 0.212 3.788 26 N -0.382 5.382 27 H 0.474 0.526 28 N -0.014 5.014 29 N -0.274 5.274 30 C -0.032 4.032 31 H 0.251 0.749 32 H 0.368 0.632 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.205 0.795 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -35.886 3.422 36.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.811 3.189 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.022 3.978 11 C -0.131 4.131 12 C 0.058 3.942 13 H 0.117 0.883 14 C -0.171 4.171 15 C -0.151 4.151 16 C -0.171 4.171 17 C -0.036 4.036 18 N -0.326 5.326 19 C 0.328 3.672 20 O -0.424 6.424 21 C -0.050 4.050 22 C -0.138 4.138 23 C 0.008 3.992 24 N -0.177 5.177 25 C -0.031 4.031 26 N -0.115 5.115 27 H 0.326 0.674 28 N 0.003 4.997 29 N -0.149 5.149 30 C -0.162 4.162 31 H 0.059 0.941 32 H 0.199 0.801 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.222 0.778 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.716 -34.704 2.400 34.795 hybrid contribution -0.315 1.454 -0.084 1.490 sum 0.401 -33.250 2.316 33.333 Atomic orbital electron populations 1.69899 1.07078 1.26092 1.59569 1.25766 0.96458 1.01721 1.03669 0.85000 0.77705 0.78667 0.77531 1.21263 1.22116 1.18720 1.19733 0.91633 0.85248 1.41257 0.90078 1.42691 1.05552 1.01697 1.89357 1.20981 0.94008 0.85187 0.97591 1.21910 0.96230 0.93227 1.01761 1.21228 0.89111 0.83838 1.00051 0.88304 1.22034 0.98308 0.99987 0.96745 1.21532 0.97719 0.92105 1.03763 1.21955 0.96795 1.00844 0.97552 1.22666 0.99223 0.80471 1.01247 1.48130 1.03617 1.09094 1.71803 1.18546 0.83116 0.88093 0.77457 1.91026 1.78467 1.23728 1.49217 1.19742 0.91463 0.96138 0.97646 1.23106 1.03333 0.90659 0.96711 1.23939 0.84476 0.98537 0.92226 1.66534 1.21042 1.23376 1.06735 1.19929 0.90233 0.94211 0.98775 1.44711 1.18428 1.15840 1.32561 0.67354 1.78169 1.12345 0.94257 1.14910 1.75504 1.01406 1.24646 1.13372 1.20549 0.98551 0.94837 1.02270 0.94072 0.80139 0.95650 0.95935 0.94360 0.92611 0.94043 0.90487 0.90872 0.89437 0.86972 0.93769 0.86598 0.87442 0.77809 0.74110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.03 13.06 21.65 0.28 -65.75 16 2 C -0.08 -5.30 5.50 84.86 0.47 -4.84 16 3 Si 0.98 49.33 29.55 68.60 2.03 51.36 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.25 -15.18 9.99 84.03 0.84 -14.34 16 8 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 9 N -0.75 -44.29 5.60 -343.45 -1.92 -46.21 16 10 C 0.15 6.80 5.77 86.38 0.50 7.29 16 11 C -0.09 -3.81 3.25 30.60 0.10 -3.71 16 12 C 0.16 4.35 3.02 44.98 0.14 4.48 16 13 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.13 -3.12 4.85 30.67 0.15 -2.97 16 15 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 16 C -0.13 -1.40 6.08 30.67 0.19 -1.22 16 17 C 0.08 0.84 4.90 86.36 0.42 1.26 16 18 N -0.59 -13.42 2.97 -798.39 -2.37 -15.79 16 19 C 0.54 16.52 7.32 86.80 0.64 17.15 16 20 O -0.55 -23.92 12.34 -3.86 -0.05 -23.96 16 21 C -0.03 -0.78 5.24 -19.79 -0.10 -0.89 16 22 C -0.12 -1.07 7.47 22.65 0.17 -0.90 16 23 C 0.18 1.08 11.14 84.82 0.94 2.02 16 24 N -0.46 -6.46 10.35 -193.10 -2.00 -8.46 16 25 C 0.21 4.42 8.56 134.17 1.15 5.57 16 26 N -0.38 -7.35 7.06 -55.48 -0.39 -7.74 16 27 H 0.47 4.60 8.96 -219.83 -1.97 2.63 16 28 N -0.01 -0.41 13.29 37.02 0.49 0.08 16 29 N -0.27 -9.72 12.42 -51.93 -0.64 -10.37 16 30 C -0.03 -0.91 7.02 40.06 0.28 -0.63 16 31 H 0.25 16.28 8.31 -92.71 -0.77 15.51 16 32 H 0.37 23.94 7.67 -92.71 -0.71 23.23 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.02 1.01 6.86 -2.39 -0.02 0.99 16 35 H 0.04 1.83 7.01 -2.39 -0.02 1.81 16 36 H 0.06 2.60 6.47 -2.39 -0.02 2.59 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.89 6.89 -2.39 -0.02 1.88 16 39 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.12 0.34 8.12 -2.39 -0.02 0.32 16 44 H 0.11 0.69 4.56 -2.39 -0.01 0.68 16 45 H 0.21 0.14 6.41 -2.91 -0.02 0.13 16 46 H 0.24 -1.42 8.06 -2.91 -0.02 -1.44 16 Total: -1.00 -98.34 368.11 -0.15 -98.49 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -1.63 Total: 21.43 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.05 Total: 6.92 kcal Atomic # 7 Polarization: -147.68 SS G_CDS: -6.56 Total: -154.23 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -98.34 -0.15 -98.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753781863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.113 kcal (2) G-P(sol) polarization free energy of solvation -98.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds