Wall clock time and date at job start Wed Apr 1 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47056 * 274.99969 * 3 2 1 5 5 H 1.48499 * 109.47120 * 34.99694 * 3 2 1 6 6 H 1.48496 * 109.46964 * 154.99448 * 3 2 1 7 7 C 1.37875 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99373 * 185.07861 * 7 2 1 9 9 C 1.50695 * 120.00392 * 5.07617 * 7 2 1 10 10 N 1.46896 * 109.47482 * 184.83814 * 9 7 2 11 11 C 1.46891 * 111.00177 * 189.59803 * 10 9 7 12 12 C 1.50703 * 109.47507 * 66.04622 * 11 10 9 13 13 C 1.38226 * 119.61630 * 94.99919 * 12 11 10 14 14 C 1.38627 * 119.15550 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.42526 * 359.97438 * 14 13 12 16 16 C 1.38175 * 119.15807 * 0.02562 * 15 14 13 17 17 N 1.31857 * 119.61395 * 274.72653 * 12 11 10 18 18 C 1.38376 * 110.99925 * 65.63959 * 10 9 7 19 19 N 1.31476 * 126.43881 * 37.37608 * 18 10 9 20 20 N 1.28414 * 110.51104 * 179.97438 * 19 18 10 21 21 N 1.28913 * 110.31565 * 359.71163 * 20 19 18 22 22 N 1.35306 * 126.44286 * 217.37357 * 18 10 9 23 23 C 1.46507 * 127.37911 * 0.02562 * 22 18 10 24 24 C 1.53000 * 109.47284 * 96.14754 * 23 22 18 25 25 H 1.08992 * 110.42038 * 52.26934 * 24 23 22 26 26 C 1.54479 * 110.37138 * 174.58214 * 24 23 22 27 27 C 1.54507 * 104.06184 * 142.80631 * 26 24 23 28 28 C 1.54479 * 104.18420 * 359.93362 * 27 26 24 29 29 O 1.44421 * 110.37022 * 289.96103 * 24 23 22 30 30 H 0.97002 * 120.00033 * 4.99980 * 1 2 3 31 31 H 1.09003 * 109.46666 * 64.83538 * 9 7 2 32 32 H 1.08998 * 109.47350 * 304.84347 * 9 7 2 33 33 H 1.09000 * 109.47037 * 186.04734 * 11 10 9 34 34 H 1.09003 * 109.47300 * 306.04409 * 11 10 9 35 35 H 1.07998 * 120.42449 * 359.95844 * 13 12 11 36 36 H 1.08008 * 120.78788 * 179.97438 * 14 13 12 37 37 H 1.08001 * 120.41877 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.61225 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.46658 * 336.14203 * 23 22 18 40 40 H 1.09002 * 109.46839 * 216.14588 * 23 22 18 41 41 H 1.08996 * 110.51068 * 24.15940 * 26 24 23 42 42 H 1.08995 * 110.51091 * 261.45370 * 26 24 23 43 43 H 1.09005 * 110.50518 * 118.64202 * 27 26 24 44 44 H 1.08999 * 110.50997 * 241.21316 * 27 26 24 45 45 H 1.09001 * 110.37205 * 94.92204 * 28 27 26 46 46 H 1.09005 * 110.36441 * 217.25547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5035 2.6199 0.8030 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1166 10 7 2.1959 -3.6164 0.0228 11 6 1.5481 -4.8923 -0.3092 12 6 1.1875 -4.9070 -1.7723 13 6 2.0519 -5.4848 -2.6831 14 6 1.7105 -5.4935 -4.0267 15 6 0.5067 -4.9186 -4.4056 16 6 -0.3064 -4.3597 -3.4382 17 7 0.0486 -4.3733 -2.1681 18 6 2.7392 -3.6522 1.2949 19 7 2.1159 -3.3736 2.4185 20 7 2.9105 -3.5057 3.4186 21 7 4.0776 -3.8776 3.0169 22 7 4.0119 -3.9807 1.6164 23 6 5.0888 -4.3672 0.7014 24 6 5.9466 -3.1425 0.3769 25 1 6.2726 -2.6527 1.2944 26 6 7.1670 -3.5517 -0.4772 27 6 7.3453 -2.3767 -1.4644 28 6 6.2114 -1.3952 -1.0935 29 8 5.2094 -2.2178 -0.4521 30 1 -0.4850 0.8369 -0.0732 31 1 0.7685 -2.5500 -1.0903 32 1 0.5028 -2.5541 0.6697 33 1 2.2321 -5.7135 -0.0953 34 1 0.6441 -5.0073 0.2890 35 1 2.9816 -5.9236 -2.3523 36 1 2.3664 -5.9374 -4.7609 37 1 0.2086 -4.9079 -5.4436 38 1 -1.2453 -3.9096 -3.7252 39 1 4.6592 -4.7640 -0.2184 40 1 5.7087 -5.1306 1.1718 41 1 6.9626 -4.4764 -1.0169 42 1 8.0520 -3.6618 0.1494 43 1 8.3185 -1.9058 -1.3258 44 1 7.2315 -2.7209 -2.4924 45 1 6.5776 -0.6361 -0.4023 46 1 5.8051 -0.9284 -1.9908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771936998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:44 Heat of formation + Delta-G solvation = 134.553228 kcal Electronic energy + Delta-G solvation = -31643.545044 eV Core-core repulsion = 27572.022727 eV Total energy + Delta-G solvation = -4071.522317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23906 -40.01734 -39.28967 -37.01708 -34.68795 -32.63550 -32.29931 -32.05038 -31.77398 -30.43924 -29.95206 -27.59334 -26.30346 -25.25954 -23.42717 -22.95917 -22.70378 -21.83250 -21.54989 -21.01498 -20.16628 -17.30291 -16.74510 -16.67258 -16.22480 -16.04110 -15.91637 -15.57099 -15.43591 -15.13173 -15.01196 -14.61253 -13.91562 -13.68632 -13.55399 -13.28287 -13.07977 -12.82550 -12.68552 -12.62212 -12.23428 -11.94123 -11.90989 -11.69860 -11.52242 -11.41451 -11.25507 -11.04674 -10.76126 -10.70285 -10.61467 -10.28127 -9.95747 -9.90707 -9.68331 -9.54353 -9.47849 -9.25200 -8.98286 -8.83958 -8.40214 -7.81642 -5.90867 -3.89698 1.25449 1.49721 1.66950 2.32310 3.08264 3.36172 3.43383 3.47311 3.83670 3.94523 4.37705 4.46123 4.50661 4.55572 4.63574 4.75100 4.83311 4.86563 5.00396 5.02214 5.18176 5.21818 5.29743 5.33183 5.34468 5.39570 5.45794 5.53228 5.59908 5.66422 5.69961 5.85275 5.87754 5.91912 5.94882 5.99000 6.05582 6.10288 6.30432 6.31177 6.48850 6.87691 6.98703 7.08515 7.36928 7.75288 7.92388 8.13046 8.30206 8.44385 9.15817 9.27077 9.71421 11.19975 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006988 B = 0.005760 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4005.802606 B = 4859.804876 C = 5847.529578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.198 3.802 10 N -0.454 5.454 11 C 0.108 3.892 12 C 0.149 3.851 13 C -0.154 4.154 14 C -0.080 4.080 15 C -0.179 4.179 16 C 0.105 3.895 17 N -0.458 5.458 18 C 0.470 3.530 19 N -0.339 5.339 20 N -0.042 5.042 21 N -0.114 5.114 22 N -0.383 5.383 23 C 0.143 3.857 24 C 0.056 3.944 25 H 0.074 0.926 26 C -0.144 4.144 27 C -0.152 4.152 28 C 0.043 3.957 29 O -0.331 6.331 30 H 0.259 0.741 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 -13.031 -9.350 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.089 0.911 9 C 0.075 3.925 10 N -0.182 5.182 11 C -0.020 4.020 12 C 0.011 3.989 13 C -0.175 4.175 14 C -0.106 4.106 15 C -0.199 4.199 16 C -0.052 4.052 17 N -0.167 5.167 18 C 0.105 3.895 19 N -0.195 5.195 20 N -0.038 5.038 21 N -0.101 5.101 22 N -0.182 5.182 23 C 0.020 3.980 24 C -0.004 4.004 25 H 0.091 0.909 26 C -0.182 4.182 27 C -0.190 4.190 28 C -0.034 4.034 29 O -0.249 6.249 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.113 -12.307 -7.615 18.247 hybrid contribution 1.094 0.675 -1.305 1.832 sum 12.207 -11.632 -8.920 19.076 Atomic orbital electron populations 1.69983 1.05770 1.26731 1.50535 1.24836 0.94690 0.98774 0.95631 0.86602 0.79975 0.83970 0.77618 1.20931 1.21386 1.20099 1.21208 0.94112 0.89664 1.49348 0.91056 1.20159 0.88884 0.84243 0.99199 1.59395 1.38885 1.05398 1.14510 1.20941 0.98639 0.90949 0.91431 1.20777 0.89976 0.92829 0.95342 1.21808 1.00248 1.01758 0.93680 1.21467 0.96154 0.97125 0.95849 1.22095 0.96079 1.00788 1.00921 1.22760 0.99276 0.95204 0.88001 1.67574 1.16969 1.13497 1.18644 1.23002 0.83244 0.91084 0.92209 1.75027 1.25580 1.23837 0.95096 1.77842 0.95632 1.08459 1.21869 1.82352 1.17643 1.23767 0.86330 1.51383 1.09726 1.50178 1.06871 1.21882 0.87322 0.96438 0.92406 1.23334 0.90905 0.90773 0.95353 0.90859 1.22899 0.97852 0.99530 0.97936 1.22928 0.99636 0.96332 1.00090 1.23418 0.88582 0.93559 0.97872 1.89558 1.27413 1.47420 1.60463 0.93111 0.92211 0.95599 0.90428 0.91476 0.85272 0.85259 0.85204 0.82869 0.87108 0.87543 0.90317 0.90349 0.90833 0.90586 0.92741 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.28 55.43 0.74 -26.48 16 2 C 0.06 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.89 22.80 29.54 -169.99 -5.02 17.78 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.50 -14.45 8.67 -34.44 -0.30 -14.75 16 8 H 0.07 2.08 6.43 -52.48 -0.34 1.74 16 9 C 0.20 5.17 4.40 -4.98 -0.02 5.15 16 10 N -0.45 -9.54 4.46 -177.61 -0.79 -10.33 16 11 C 0.11 1.87 5.21 -4.98 -0.03 1.85 16 12 C 0.15 2.45 5.71 -82.58 -0.47 1.98 16 13 C -0.15 -2.00 9.72 -39.44 -0.38 -2.39 16 14 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 15 C -0.18 -2.11 10.11 -39.44 -0.40 -2.50 16 16 C 0.11 1.54 11.18 -17.55 -0.20 1.35 16 17 N -0.46 -8.27 8.64 -9.47 -0.08 -8.35 16 18 C 0.47 10.10 5.96 -320.42 -1.91 8.19 16 19 N -0.34 -8.21 11.44 30.09 0.34 -7.87 16 20 N -0.04 -0.95 13.38 60.35 0.81 -0.14 16 21 N -0.11 -2.29 13.93 60.35 0.84 -1.45 16 22 N -0.38 -7.01 3.69 -61.86 -0.23 -7.23 16 23 C 0.14 1.86 6.12 -4.04 -0.02 1.84 16 24 C 0.06 0.76 3.53 -25.95 -0.09 0.66 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 C -0.14 -1.32 6.63 -25.16 -0.17 -1.49 16 27 C -0.15 -1.48 7.08 -25.16 -0.18 -1.66 16 28 C 0.04 0.59 7.65 37.93 0.29 0.89 16 29 O -0.33 -5.81 10.10 -35.23 -0.36 -6.17 16 30 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 31 H 0.06 1.63 5.85 -51.93 -0.30 1.32 16 32 H 0.03 0.77 7.67 -51.93 -0.40 0.37 16 33 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 34 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 40 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -36.40 386.93 -8.79 -45.18 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.49 Total: -0.30 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -4.38 Total: -0.46 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 1.63 Total: -61.86 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.36 Total: -6.17 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.40 -8.79 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771936998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.735 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds