Wall clock time and date at job start Wed Apr 1 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47056 * 274.99969 * 3 2 1 5 5 H 1.48499 * 109.47120 * 34.99694 * 3 2 1 6 6 H 1.48496 * 109.46964 * 154.99448 * 3 2 1 7 7 C 1.37875 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99373 * 185.07861 * 7 2 1 9 9 C 1.50695 * 120.00392 * 5.07617 * 7 2 1 10 10 N 1.46896 * 109.47482 * 184.83814 * 9 7 2 11 11 C 1.46891 * 111.00177 * 189.59803 * 10 9 7 12 12 C 1.50703 * 109.47507 * 66.04622 * 11 10 9 13 13 C 1.38226 * 119.61630 * 94.99919 * 12 11 10 14 14 C 1.38627 * 119.15550 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.42526 * 359.97438 * 14 13 12 16 16 C 1.38175 * 119.15807 * 0.02562 * 15 14 13 17 17 N 1.31857 * 119.61395 * 274.72653 * 12 11 10 18 18 C 1.38376 * 110.99925 * 65.63959 * 10 9 7 19 19 N 1.31476 * 126.43881 * 37.37608 * 18 10 9 20 20 N 1.28414 * 110.51104 * 179.97438 * 19 18 10 21 21 N 1.28913 * 110.31565 * 359.71163 * 20 19 18 22 22 N 1.35306 * 126.44286 * 217.37357 * 18 10 9 23 23 C 1.46507 * 127.37911 * 0.02562 * 22 18 10 24 24 C 1.53000 * 109.47284 * 96.14754 * 23 22 18 25 25 H 1.08992 * 110.42038 * 52.26934 * 24 23 22 26 26 C 1.54479 * 110.37138 * 174.58214 * 24 23 22 27 27 C 1.54507 * 104.06184 * 142.80631 * 26 24 23 28 28 C 1.54479 * 104.18420 * 359.93362 * 27 26 24 29 29 O 1.44421 * 110.37022 * 289.96103 * 24 23 22 30 30 H 0.97002 * 120.00033 * 4.99980 * 1 2 3 31 31 H 1.09003 * 109.46666 * 64.83538 * 9 7 2 32 32 H 1.08998 * 109.47350 * 304.84347 * 9 7 2 33 33 H 1.09000 * 109.47037 * 186.04734 * 11 10 9 34 34 H 1.09003 * 109.47300 * 306.04409 * 11 10 9 35 35 H 1.07998 * 120.42449 * 359.95844 * 13 12 11 36 36 H 1.08008 * 120.78788 * 179.97438 * 14 13 12 37 37 H 1.08001 * 120.41877 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.61225 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.46658 * 336.14203 * 23 22 18 40 40 H 1.09002 * 109.46839 * 216.14588 * 23 22 18 41 41 H 1.08996 * 110.51068 * 24.15940 * 26 24 23 42 42 H 1.08995 * 110.51091 * 261.45370 * 26 24 23 43 43 H 1.09005 * 110.50518 * 118.64202 * 27 26 24 44 44 H 1.08999 * 110.50997 * 241.21316 * 27 26 24 45 45 H 1.09001 * 110.37205 * 94.92204 * 28 27 26 46 46 H 1.09005 * 110.36441 * 217.25547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5035 2.6199 0.8030 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1166 10 7 2.1959 -3.6164 0.0228 11 6 1.5481 -4.8923 -0.3092 12 6 1.1875 -4.9070 -1.7723 13 6 2.0519 -5.4848 -2.6831 14 6 1.7105 -5.4935 -4.0267 15 6 0.5067 -4.9186 -4.4056 16 6 -0.3064 -4.3597 -3.4382 17 7 0.0486 -4.3733 -2.1681 18 6 2.7392 -3.6522 1.2949 19 7 2.1159 -3.3736 2.4185 20 7 2.9105 -3.5057 3.4186 21 7 4.0776 -3.8776 3.0169 22 7 4.0119 -3.9807 1.6164 23 6 5.0888 -4.3672 0.7014 24 6 5.9466 -3.1425 0.3769 25 1 6.2726 -2.6527 1.2944 26 6 7.1670 -3.5517 -0.4772 27 6 7.3453 -2.3767 -1.4644 28 6 6.2114 -1.3952 -1.0935 29 8 5.2094 -2.2178 -0.4521 30 1 -0.4850 0.8369 -0.0732 31 1 0.7685 -2.5500 -1.0903 32 1 0.5028 -2.5541 0.6697 33 1 2.2321 -5.7135 -0.0953 34 1 0.6441 -5.0073 0.2890 35 1 2.9816 -5.9236 -2.3523 36 1 2.3664 -5.9374 -4.7609 37 1 0.2086 -4.9079 -5.4436 38 1 -1.2453 -3.9096 -3.7252 39 1 4.6592 -4.7640 -0.2184 40 1 5.7087 -5.1306 1.1718 41 1 6.9626 -4.4764 -1.0169 42 1 8.0520 -3.6618 0.1494 43 1 8.3185 -1.9058 -1.3258 44 1 7.2315 -2.7209 -2.4924 45 1 6.5776 -0.6361 -0.4023 46 1 5.8051 -0.9284 -1.9908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771936998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:43 Heat of formation + Delta-G solvation = 108.934883 kcal Electronic energy + Delta-G solvation = -31644.655939 eV Core-core repulsion = 27572.022727 eV Total energy + Delta-G solvation = -4072.633212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.89018 -41.12654 -40.32217 -38.62968 -36.09403 -34.74791 -33.44559 -33.04102 -32.98869 -31.86054 -31.31496 -29.44316 -27.51924 -26.71177 -25.03545 -24.28490 -24.16680 -23.09505 -22.69092 -21.93383 -21.77227 -18.85417 -18.48951 -17.94385 -17.39963 -17.36896 -17.16315 -16.98516 -16.57623 -16.46980 -16.33132 -16.17907 -15.63489 -14.99134 -14.56795 -14.50991 -14.44222 -14.07740 -13.90957 -13.87700 -13.78206 -13.58602 -13.28235 -13.00120 -12.72862 -12.69126 -12.63642 -12.58300 -12.43536 -12.10330 -12.04530 -11.91553 -11.52902 -11.36568 -11.23096 -11.17937 -10.70372 -10.66925 -10.59168 -10.20663 -9.95796 -9.59543 -8.17103 -6.22195 0.00705 0.24016 0.51827 0.89681 1.28786 1.32411 1.37342 1.42000 2.34967 2.59022 2.94041 3.15875 3.17743 3.33777 3.47770 3.56605 3.66963 3.76831 3.90055 3.96726 4.10578 4.14942 4.19500 4.24206 4.27476 4.36987 4.43330 4.46364 4.51743 4.53252 4.62619 4.79037 4.82639 4.89601 4.92102 4.97690 5.00166 5.12163 5.20377 5.23580 5.32413 5.35557 5.37766 5.61283 5.89191 5.93456 5.97615 6.06658 6.32345 6.91214 7.23256 7.42282 7.57713 8.94469 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006988 B = 0.005760 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4005.802606 B = 4859.804876 C = 5847.529578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.224 3.776 10 N -0.440 5.440 11 C 0.109 3.891 12 C 0.115 3.885 13 C -0.147 4.147 14 C -0.074 4.074 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.512 5.512 18 C 0.458 3.542 19 N -0.385 5.385 20 N -0.067 5.067 21 N -0.100 5.100 22 N -0.363 5.363 23 C 0.128 3.872 24 C 0.049 3.951 25 H 0.053 0.947 26 C -0.129 4.129 27 C -0.140 4.140 28 C 0.031 3.969 29 O -0.378 6.378 30 H 0.261 0.739 31 H 0.048 0.952 32 H -0.022 1.022 33 H 0.117 0.883 34 H 0.039 0.961 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.545 -14.991 -12.084 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.099 3.901 10 N -0.167 5.167 11 C -0.018 4.018 12 C -0.023 4.023 13 C -0.167 4.167 14 C -0.100 4.100 15 C -0.185 4.185 16 C -0.081 4.081 17 N -0.223 5.223 18 C 0.092 3.908 19 N -0.243 5.243 20 N -0.063 5.063 21 N -0.087 5.087 22 N -0.163 5.163 23 C 0.008 3.992 24 C -0.010 4.010 25 H 0.071 0.929 26 C -0.167 4.167 27 C -0.178 4.178 28 C -0.046 4.046 29 O -0.297 6.297 30 H 0.070 0.930 31 H 0.066 0.934 32 H -0.004 1.004 33 H 0.135 0.865 34 H 0.057 0.943 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.061 0.939 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.924 -14.293 -10.367 23.119 hybrid contribution -0.028 1.209 -0.511 1.313 sum 14.896 -13.083 -10.878 22.614 Atomic orbital electron populations 1.70114 1.07214 1.27561 1.51840 1.25654 0.95500 1.02247 0.95571 0.85647 0.78325 0.79937 0.78392 1.19033 1.21273 1.20301 1.21453 0.93866 0.90951 1.48433 0.91658 1.19546 0.88370 0.85529 0.96608 1.59300 1.37553 1.05735 1.14067 1.21093 0.98171 0.90064 0.92501 1.20748 0.91008 0.95364 0.95145 1.22136 1.00396 1.00263 0.93892 1.22008 0.96169 0.95868 0.95924 1.22488 0.95557 0.98592 1.01880 1.23055 1.00585 0.96595 0.87823 1.67398 1.18684 1.15329 1.20841 1.22949 0.84362 0.91784 0.91682 1.74914 1.27521 1.25392 0.96433 1.77803 0.96274 1.10147 1.22100 1.82197 1.16687 1.22345 0.87511 1.51637 1.09610 1.48467 1.06549 1.22599 0.86554 0.97521 0.92555 1.23497 0.92402 0.90072 0.95035 0.92929 1.22893 0.96310 1.00117 0.97361 1.22886 0.98576 0.95407 1.00931 1.23564 0.89627 0.94341 0.97087 1.89505 1.30017 1.48780 1.61383 0.93043 0.93434 1.00418 0.86542 0.94300 0.82031 0.80812 0.81633 0.82397 0.85302 0.83028 0.87670 0.87990 0.88933 0.89255 0.93866 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.09 13.28 21.45 0.28 -58.80 16 2 C 0.01 0.50 5.45 84.65 0.46 0.97 16 3 Si 0.95 48.11 29.54 68.60 2.03 50.14 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.51 -30.27 8.67 25.60 0.22 -30.05 16 8 H 0.07 3.92 6.43 -2.91 -0.02 3.90 16 9 C 0.22 12.39 4.40 85.56 0.38 12.77 16 10 N -0.44 -18.96 4.46 -715.83 -3.19 -22.16 16 11 C 0.11 3.84 5.21 85.56 0.45 4.29 16 12 C 0.11 3.77 5.71 42.55 0.24 4.02 16 13 C -0.15 -3.36 9.72 22.36 0.22 -3.14 16 14 C -0.07 -1.36 10.18 22.47 0.23 -1.13 16 15 C -0.17 -3.45 10.11 22.36 0.23 -3.22 16 16 C 0.08 2.26 11.18 84.67 0.95 3.21 16 17 N -0.51 -19.29 8.64 -183.88 -1.59 -20.87 16 18 C 0.46 20.14 5.96 260.65 1.55 21.69 16 19 N -0.39 -19.59 11.44 -58.70 -0.67 -20.26 16 20 N -0.07 -3.16 13.38 37.02 0.50 -2.66 16 21 N -0.10 -4.00 13.93 37.02 0.52 -3.49 16 22 N -0.36 -13.00 3.69 -349.61 -1.29 -14.28 16 23 C 0.13 2.94 6.12 86.38 0.53 3.47 16 24 C 0.05 1.21 3.53 31.10 0.11 1.32 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 C -0.13 -1.77 6.63 31.61 0.21 -1.56 16 27 C -0.14 -2.22 7.08 31.61 0.22 -1.99 16 28 C 0.03 0.82 7.65 72.48 0.55 1.37 16 29 O -0.38 -12.99 10.10 -148.98 -1.51 -14.50 16 30 H 0.26 15.71 8.32 -92.71 -0.77 14.94 16 31 H 0.05 2.76 5.85 -2.39 -0.01 2.74 16 32 H -0.02 -1.43 7.67 -2.39 -0.02 -1.44 16 33 H 0.12 3.07 7.95 -2.39 -0.02 3.05 16 34 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.13 2.55 8.08 -2.39 -0.02 2.53 16 40 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 0.94 7.87 -2.39 -0.02 0.92 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -87.39 386.93 2.61 -84.78 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.99 Total: 10.12 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.55 Total: 12.00 kcal Atomic # 7 Polarization: -137.08 SS G_CDS: -5.45 Total: -142.53 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.51 Total: -14.50 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -87.39 2.61 -84.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771936998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.711 kcal (2) G-P(sol) polarization free energy of solvation -87.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds