Wall clock time and date at job start Wed Apr 1 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81402 * 109.47211 * 2 1 4 4 O 1.42098 * 108.57656 * 65.51324 * 3 2 1 5 5 O 1.42099 * 108.57773 * 294.49026 * 3 2 1 6 6 C 1.81395 * 101.92230 * 180.02562 * 3 2 1 7 7 C 1.53004 * 109.47265 * 180.02562 * 6 3 2 8 8 N 1.46893 * 109.47447 * 180.02562 * 7 6 3 9 9 C 1.46902 * 111.00177 * 66.04200 * 8 7 6 10 10 C 1.38575 * 111.00377 * 189.99835 * 8 7 6 11 11 N 1.31218 * 126.47246 * 304.56010 * 10 8 7 12 12 N 1.28535 * 109.86335 * 179.97438 * 11 10 8 13 13 C 1.30290 * 110.04911 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.34656 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47724 * 246.58462 * 14 13 12 16 16 C 1.53002 * 109.47012 * 126.58194 * 14 13 12 17 17 C 1.50706 * 109.46842 * 6.58654 * 14 13 12 18 18 H 1.07995 * 119.99993 * 359.71987 * 17 14 13 19 19 C 1.37882 * 119.99698 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00127 * 359.71507 * 19 17 14 21 21 Si 1.86799 * 119.99688 * 179.72206 * 19 17 14 22 22 H 1.48508 * 109.47202 * 89.99761 * 21 19 17 23 23 H 1.48501 * 109.47176 * 209.99675 * 21 19 17 24 24 H 1.48503 * 109.47291 * 329.99631 * 21 19 17 25 25 N 1.36456 * 126.47644 * 124.86857 * 10 8 7 26 26 C 1.46501 * 127.13728 * 359.97438 * 25 10 8 27 27 H 1.09001 * 109.47345 * 59.99963 * 1 2 3 28 28 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47025 * 299.99775 * 1 2 3 30 30 H 1.09001 * 109.47025 * 240.00225 * 2 1 3 31 31 H 1.09001 * 109.47345 * 120.00037 * 2 1 3 32 32 H 1.09003 * 109.47190 * 60.00049 * 6 3 2 33 33 H 1.09004 * 109.47464 * 300.00114 * 6 3 2 34 34 H 1.09003 * 109.47174 * 59.99797 * 7 6 3 35 35 H 1.09005 * 109.46741 * 299.99741 * 7 6 3 36 36 H 1.08998 * 109.47232 * 177.62122 * 9 8 7 37 37 H 1.09003 * 109.47172 * 297.61714 * 9 8 7 38 38 H 1.08999 * 109.46943 * 57.61776 * 9 8 7 39 39 H 1.08996 * 109.46951 * 185.63294 * 15 14 13 40 40 H 1.08999 * 109.46628 * 305.62917 * 15 14 13 41 41 H 1.08994 * 109.47084 * 65.62525 * 15 14 13 42 42 H 1.09005 * 109.46925 * 300.00066 * 16 14 13 43 43 H 1.08993 * 109.47296 * 60.00173 * 16 14 13 44 44 H 1.09007 * 109.47012 * 180.02562 * 16 14 13 45 45 H 0.97005 * 119.99708 * 179.97438 * 20 19 17 46 46 H 1.08991 * 109.47287 * 272.98500 * 26 25 10 47 47 H 1.09002 * 109.46538 * 32.98381 * 26 25 10 48 48 H 1.08999 * 109.47012 * 152.97885 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6280 2.8349 -0.0002 8 7 6.0842 2.6420 -0.0015 9 6 6.5321 2.0217 -1.2556 10 6 6.7441 3.8395 0.2236 11 7 6.6086 4.9467 -0.4676 12 7 7.3713 5.8605 0.0176 13 6 8.0327 5.3946 1.0388 14 6 9.0284 6.1520 1.8790 15 6 10.4232 5.5561 1.6784 16 6 8.6359 6.0464 3.3540 17 6 9.0367 7.6008 1.4640 18 1 8.3894 7.9382 0.6681 19 6 9.8754 8.4942 2.0961 20 7 10.6639 8.0832 3.0651 21 14 9.8913 10.2884 1.5764 22 1 8.8921 11.0437 2.3742 23 1 11.2427 10.8587 1.8077 24 1 9.5517 10.3891 0.1343 25 7 7.6620 4.0886 1.2021 26 6 8.1457 3.1525 2.2200 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 4.3357 3.3916 0.8902 35 1 4.3350 3.3925 -0.8899 36 1 7.6181 1.9289 -1.2475 37 1 6.0837 1.0329 -1.3523 38 1 6.2267 2.6431 -2.0975 39 1 11.1252 6.0370 2.3596 40 1 10.3938 4.4858 1.8830 41 1 10.7442 5.7206 0.6499 42 1 7.6423 6.4711 3.4969 43 1 8.6299 4.9986 3.6543 44 1 9.3559 6.5947 3.9618 45 1 11.2542 8.7117 3.5095 46 1 7.4809 3.1790 3.0832 47 1 8.1644 2.1441 1.8065 48 1 9.1518 3.4378 2.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772162634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:54 Heat of formation + Delta-G solvation = 25.405152 kcal Electronic energy + Delta-G solvation = -29041.690558 eV Core-core repulsion = 25068.586425 eV Total energy + Delta-G solvation = -3973.104133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34040 -37.91891 -37.27653 -36.32701 -35.76710 -34.14819 -33.62356 -31.90325 -31.04796 -28.47979 -27.30043 -26.39530 -25.90055 -25.16311 -24.64370 -22.77636 -21.87883 -20.24550 -19.24238 -19.17261 -17.72486 -16.79161 -16.67405 -16.09206 -16.05944 -15.88683 -15.47748 -14.96115 -14.87120 -14.64945 -14.52142 -13.69259 -13.63743 -13.32691 -13.15155 -13.07959 -12.99672 -12.64848 -12.39489 -12.36671 -12.28134 -12.09974 -12.03264 -11.86174 -11.60482 -11.41307 -11.24686 -11.08570 -10.90340 -10.77225 -10.68228 -10.57157 -10.29037 -10.13524 -9.97043 -9.80895 -9.50967 -8.97626 -8.61502 -8.42764 -8.17665 -6.03453 -4.08424 -0.43872 2.33440 2.37853 2.68920 3.24643 3.34982 3.41026 3.49424 3.61579 3.62295 3.89984 4.14767 4.16783 4.22884 4.45211 4.48939 4.71766 5.00449 5.02830 5.08222 5.11140 5.17045 5.20731 5.26577 5.33733 5.38258 5.43503 5.46973 5.53449 5.65799 5.71002 5.95281 6.04596 6.49684 6.53292 6.55516 6.62737 6.64633 6.72719 7.11878 7.15938 7.35611 7.57086 7.76195 7.80727 8.08308 8.29516 8.98452 9.48937 9.59873 11.00683 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002460 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.354935 B =11380.564096 C =11729.099584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.613 4.613 3 S 2.418 3.582 4 O -0.932 6.932 5 O -0.932 6.932 6 C -0.613 4.613 7 C 0.080 3.920 8 N -0.453 5.453 9 C 0.029 3.971 10 C 0.292 3.708 11 N -0.314 5.314 12 N -0.286 5.286 13 C 0.247 3.753 14 C 0.144 3.856 15 C -0.129 4.129 16 C -0.136 4.136 17 C -0.492 4.492 18 H 0.077 0.923 19 C 0.063 3.937 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.272 1.272 25 N -0.471 5.471 26 C 0.081 3.919 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.009 0.991 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.013 0.987 44 H 0.099 0.901 45 H 0.261 0.739 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -22.000 -2.719 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.742 4.742 3 S 2.599 3.401 4 O -0.929 6.929 5 O -0.929 6.929 6 C -0.742 4.742 7 C -0.049 4.049 8 N -0.178 5.178 9 C -0.119 4.119 10 C -0.064 4.064 11 N -0.159 5.159 12 N -0.125 5.125 13 C -0.020 4.020 14 C 0.141 3.859 15 C -0.187 4.187 16 C -0.195 4.195 17 C -0.531 4.531 18 H 0.095 0.905 19 C -0.138 4.138 20 N -0.535 5.535 21 Si 0.729 3.271 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.196 1.196 25 N -0.164 5.164 26 C -0.062 4.062 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.032 0.968 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.844 -20.521 -3.277 24.430 hybrid contribution 0.843 -0.582 0.180 1.040 sum -12.001 -21.102 -3.097 24.473 Atomic orbital electron populations 1.21522 0.90296 1.04866 1.03923 1.30210 1.07603 1.24841 1.11553 1.08165 0.78031 0.78271 0.75650 1.93614 1.80878 1.72882 1.45508 1.93611 1.80896 1.72892 1.45531 1.30494 1.24349 1.07051 1.12278 1.21706 0.86244 0.92641 1.04298 1.58472 1.04220 1.18581 1.36517 1.22504 1.01607 0.98968 0.88796 1.22008 0.97815 0.93239 0.93328 1.74528 1.19970 0.97717 1.23701 1.74141 1.07609 1.21433 1.09275 1.26289 0.98959 0.79819 0.96914 1.16978 0.86402 0.93328 0.89175 1.21914 0.99488 0.95523 1.01825 1.21986 1.01653 0.97634 0.98188 1.21066 1.22552 0.90348 1.19106 0.90461 1.24870 0.95055 0.99013 0.94827 1.69785 1.25046 1.34706 1.23915 0.86433 0.76990 0.84361 0.79359 1.20703 1.21381 1.19637 1.46253 1.32718 1.12245 1.25167 1.22096 1.01588 0.92306 0.90257 0.90732 0.90062 0.90718 0.84974 0.84907 0.84654 0.83960 0.88906 0.91032 0.90972 0.90403 0.93344 0.88591 0.97248 0.94582 0.94990 0.96838 0.88268 0.92927 0.90782 0.90043 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.92 37.15 0.37 -0.38 16 2 C -0.61 -2.50 6.52 37.15 0.24 -2.26 16 3 S 2.42 19.75 4.72 -107.50 -0.51 19.25 16 4 O -0.93 -11.35 18.10 -57.83 -1.05 -12.40 16 5 O -0.93 -11.13 18.10 -57.83 -1.05 -12.18 16 6 C -0.61 -4.28 5.73 37.16 0.21 -4.07 16 7 C 0.08 0.99 4.82 -3.83 -0.02 0.98 16 8 N -0.45 -6.22 4.78 -182.38 -0.87 -7.09 16 9 C 0.03 0.32 9.22 60.07 0.55 0.88 16 10 C 0.29 5.42 6.43 -318.88 -2.05 3.37 16 11 N -0.31 -7.00 12.12 30.31 0.37 -6.64 16 12 N -0.29 -7.14 11.01 32.99 0.36 -6.78 16 13 C 0.25 5.67 6.34 -154.02 -0.98 4.69 16 14 C 0.14 3.44 0.48 -156.81 -0.07 3.36 16 15 C -0.13 -2.89 8.07 37.16 0.30 -2.59 16 16 C -0.14 -3.05 8.07 37.16 0.30 -2.75 16 17 C -0.49 -13.32 7.91 -34.44 -0.27 -13.59 16 18 H 0.08 2.23 6.96 -52.49 -0.37 1.86 16 19 C 0.06 1.66 5.15 -17.82 -0.09 1.57 16 20 N -0.90 -23.52 9.42 55.43 0.52 -23.00 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 25 N -0.47 -8.89 3.21 -121.46 -0.39 -9.28 16 26 C 0.08 1.14 9.48 59.85 0.57 1.71 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.14 0.57 6.60 -51.92 -0.34 0.23 16 33 H 0.14 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.57 6.58 -51.93 -0.34 0.23 16 38 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.10 2.30 6.25 -51.93 -0.32 1.97 16 40 H 0.01 0.17 5.74 -51.93 -0.30 -0.13 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.01 0.24 5.53 -51.93 -0.29 -0.04 16 44 H 0.10 2.40 6.06 -51.93 -0.31 2.08 16 45 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 46 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.10 1.38 4.76 -51.93 -0.25 1.13 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -36.43 390.89 -10.24 -46.66 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.56 Total: -1.72 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.94 Total: -9.08 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.01 Total: -52.79 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -2.09 Total: -24.57 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 19.75 SS G_CDS: -0.51 Total: 19.25 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.43 -10.24 -46.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772162634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.068 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds