Wall clock time and date at job start Wed Apr 1 2020 03:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81402 * 109.47211 * 2 1 4 4 O 1.42098 * 108.57656 * 65.51324 * 3 2 1 5 5 O 1.42099 * 108.57773 * 294.49026 * 3 2 1 6 6 C 1.81395 * 101.92230 * 180.02562 * 3 2 1 7 7 C 1.53004 * 109.47265 * 180.02562 * 6 3 2 8 8 N 1.46893 * 109.47447 * 180.02562 * 7 6 3 9 9 C 1.46902 * 111.00177 * 66.04200 * 8 7 6 10 10 C 1.38575 * 111.00377 * 189.99835 * 8 7 6 11 11 N 1.31218 * 126.47246 * 304.56010 * 10 8 7 12 12 N 1.28535 * 109.86335 * 179.97438 * 11 10 8 13 13 C 1.30290 * 110.04911 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.34656 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47724 * 246.58462 * 14 13 12 16 16 C 1.53002 * 109.47012 * 126.58194 * 14 13 12 17 17 C 1.50706 * 109.46842 * 6.58654 * 14 13 12 18 18 H 1.07995 * 119.99993 * 359.71987 * 17 14 13 19 19 C 1.37882 * 119.99698 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00127 * 359.71507 * 19 17 14 21 21 Si 1.86799 * 119.99688 * 179.72206 * 19 17 14 22 22 H 1.48508 * 109.47202 * 89.99761 * 21 19 17 23 23 H 1.48501 * 109.47176 * 209.99675 * 21 19 17 24 24 H 1.48503 * 109.47291 * 329.99631 * 21 19 17 25 25 N 1.36456 * 126.47644 * 124.86857 * 10 8 7 26 26 C 1.46501 * 127.13728 * 359.97438 * 25 10 8 27 27 H 1.09001 * 109.47345 * 59.99963 * 1 2 3 28 28 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47025 * 299.99775 * 1 2 3 30 30 H 1.09001 * 109.47025 * 240.00225 * 2 1 3 31 31 H 1.09001 * 109.47345 * 120.00037 * 2 1 3 32 32 H 1.09003 * 109.47190 * 60.00049 * 6 3 2 33 33 H 1.09004 * 109.47464 * 300.00114 * 6 3 2 34 34 H 1.09003 * 109.47174 * 59.99797 * 7 6 3 35 35 H 1.09005 * 109.46741 * 299.99741 * 7 6 3 36 36 H 1.08998 * 109.47232 * 177.62122 * 9 8 7 37 37 H 1.09003 * 109.47172 * 297.61714 * 9 8 7 38 38 H 1.08999 * 109.46943 * 57.61776 * 9 8 7 39 39 H 1.08996 * 109.46951 * 185.63294 * 15 14 13 40 40 H 1.08999 * 109.46628 * 305.62917 * 15 14 13 41 41 H 1.08994 * 109.47084 * 65.62525 * 15 14 13 42 42 H 1.09005 * 109.46925 * 300.00066 * 16 14 13 43 43 H 1.08993 * 109.47296 * 60.00173 * 16 14 13 44 44 H 1.09007 * 109.47012 * 180.02562 * 16 14 13 45 45 H 0.97005 * 119.99708 * 179.97438 * 20 19 17 46 46 H 1.08991 * 109.47287 * 272.98500 * 26 25 10 47 47 H 1.09002 * 109.46538 * 32.98381 * 26 25 10 48 48 H 1.08999 * 109.47012 * 152.97885 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6280 2.8349 -0.0002 8 7 6.0842 2.6420 -0.0015 9 6 6.5321 2.0217 -1.2556 10 6 6.7441 3.8395 0.2236 11 7 6.6086 4.9467 -0.4676 12 7 7.3713 5.8605 0.0176 13 6 8.0327 5.3946 1.0388 14 6 9.0284 6.1520 1.8790 15 6 10.4232 5.5561 1.6784 16 6 8.6359 6.0464 3.3540 17 6 9.0367 7.6008 1.4640 18 1 8.3894 7.9382 0.6681 19 6 9.8754 8.4942 2.0961 20 7 10.6639 8.0832 3.0651 21 14 9.8913 10.2884 1.5764 22 1 8.8921 11.0437 2.3742 23 1 11.2427 10.8587 1.8077 24 1 9.5517 10.3891 0.1343 25 7 7.6620 4.0886 1.2021 26 6 8.1457 3.1525 2.2200 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 4.3357 3.3916 0.8902 35 1 4.3350 3.3925 -0.8899 36 1 7.6181 1.9289 -1.2475 37 1 6.0837 1.0329 -1.3523 38 1 6.2267 2.6431 -2.0975 39 1 11.1252 6.0370 2.3596 40 1 10.3938 4.4858 1.8830 41 1 10.7442 5.7206 0.6499 42 1 7.6423 6.4711 3.4969 43 1 8.6299 4.9986 3.6543 44 1 9.3559 6.5947 3.9618 45 1 11.2542 8.7117 3.5095 46 1 7.4809 3.1790 3.0832 47 1 8.1644 2.1441 1.8065 48 1 9.1518 3.4378 2.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772162634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:53 Heat of formation + Delta-G solvation = -0.823237 kcal Electronic energy + Delta-G solvation = -29042.827906 eV Core-core repulsion = 25068.586425 eV Total energy + Delta-G solvation = -3974.241481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.91783 -39.04859 -38.02142 -37.54566 -37.05992 -35.68332 -33.97704 -33.37167 -32.40606 -29.96659 -28.57732 -27.71558 -27.43128 -27.07793 -25.28007 -23.77094 -23.49150 -21.55012 -20.95973 -19.83646 -18.70801 -17.91051 -17.67964 -17.41998 -17.26963 -16.94856 -16.81433 -16.49830 -15.90551 -15.67563 -15.30883 -15.14050 -14.76400 -14.50988 -14.27877 -14.03381 -13.90581 -13.60945 -13.52850 -13.29819 -13.25164 -13.15731 -13.05161 -12.98134 -12.97069 -12.71007 -12.50910 -12.49306 -12.34838 -12.28710 -12.06960 -11.93850 -11.88697 -11.82547 -11.56038 -11.25648 -10.96440 -10.73922 -10.43111 -10.02914 -9.82742 -8.06417 -6.16294 -1.02424 0.83419 1.33395 1.42179 1.44711 1.56242 1.84697 1.93289 2.46252 2.54090 2.86173 3.08412 3.19873 3.44188 3.68987 3.71491 3.79653 3.87998 3.99169 4.09291 4.26858 4.32469 4.35464 4.37662 4.45501 4.49288 4.57371 4.59880 4.76573 4.77689 4.80459 4.85894 4.88529 4.91083 4.92775 4.95812 5.15946 5.17340 5.28004 5.47851 5.50389 5.54413 5.75864 5.96585 6.06046 6.26933 6.38745 6.86448 7.49003 7.89211 8.95219 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002460 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.354935 B =11380.564096 C =11729.099584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.578 4.578 3 S 2.402 3.598 4 O -0.987 6.987 5 O -0.985 6.985 6 C -0.595 4.595 7 C 0.068 3.932 8 N -0.438 5.438 9 C 0.022 3.978 10 C 0.316 3.684 11 N -0.357 5.357 12 N -0.335 5.335 13 C 0.229 3.771 14 C 0.140 3.860 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.516 4.516 18 H 0.047 0.953 19 C 0.032 3.968 20 N -0.900 5.900 21 Si 0.945 3.055 22 H -0.279 1.279 23 H -0.275 1.275 24 H -0.284 1.284 25 N -0.467 5.467 26 C 0.070 3.930 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.032 0.968 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.264 0.736 46 H 0.090 0.910 47 H 0.117 0.883 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -26.636 -2.179 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.711 4.711 3 S 2.590 3.410 4 O -0.984 6.984 5 O -0.982 6.982 6 C -0.724 4.724 7 C -0.060 4.060 8 N -0.164 5.164 9 C -0.124 4.124 10 C -0.042 4.042 11 N -0.201 5.201 12 N -0.173 5.173 13 C -0.040 4.040 14 C 0.137 3.863 15 C -0.174 4.174 16 C -0.182 4.182 17 C -0.554 4.554 18 H 0.066 0.934 19 C -0.168 4.168 20 N -0.539 5.539 21 Si 0.772 3.228 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.210 1.210 25 N -0.159 5.159 26 C -0.071 4.071 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.186 0.814 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.135 0.865 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.790 -25.119 -2.722 28.319 hybrid contribution 0.738 0.686 -0.019 1.008 sum -12.052 -24.433 -2.741 27.382 Atomic orbital electron populations 1.21721 0.91170 1.06247 1.03281 1.29947 1.06614 1.19442 1.15145 1.08263 0.78603 0.80529 0.73627 1.93547 1.81951 1.75916 1.46970 1.93548 1.81918 1.75868 1.46859 1.30356 1.21915 1.04207 1.15942 1.21768 0.85813 0.96007 1.02438 1.58886 1.04433 1.15303 1.37797 1.22735 1.02050 1.00885 0.86762 1.22586 0.96169 0.93823 0.91597 1.74422 1.21128 0.98975 1.25583 1.74010 1.09002 1.23487 1.10819 1.25939 0.99459 0.81607 0.97005 1.16898 0.87503 0.91922 0.89964 1.21725 0.98076 0.97537 1.00105 1.21810 0.99818 0.99583 0.96999 1.21152 1.22598 0.92842 1.18853 0.93447 1.25336 0.94934 1.01475 0.95018 1.69843 1.24868 1.35345 1.23814 0.85753 0.77399 0.81428 0.78177 1.20546 1.20049 1.20951 1.46393 1.32309 1.11451 1.25776 1.22485 1.01734 0.92894 0.89983 0.91538 0.87432 0.91639 0.81315 0.81446 0.80797 0.80481 0.91171 0.93052 0.91139 0.85119 0.94941 0.90144 0.93717 0.96478 0.96784 0.93120 0.90038 0.92666 0.89135 0.86500 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.92 71.98 0.71 -0.50 16 2 C -0.58 -2.06 6.52 71.98 0.47 -1.59 16 3 S 2.40 35.98 4.72 -56.49 -0.27 35.71 16 4 O -0.99 -24.42 18.10 -127.37 -2.31 -26.73 16 5 O -0.98 -23.88 18.10 -127.37 -2.30 -26.19 16 6 C -0.59 -6.08 5.73 71.98 0.41 -5.66 16 7 C 0.07 1.63 4.82 86.31 0.42 2.04 16 8 N -0.44 -10.99 4.78 -730.92 -3.49 -14.49 16 9 C 0.02 0.43 9.22 127.69 1.18 1.60 16 10 C 0.32 11.56 6.43 260.11 1.67 13.23 16 11 N -0.36 -16.50 12.12 -58.01 -0.70 -17.20 16 12 N -0.33 -17.52 11.01 -49.54 -0.55 -18.06 16 13 C 0.23 10.71 6.34 137.64 0.87 11.58 16 14 C 0.14 6.79 0.48 -53.67 -0.03 6.76 16 15 C -0.12 -5.18 8.07 71.98 0.58 -4.60 16 16 C -0.12 -5.52 8.07 71.98 0.58 -4.94 16 17 C -0.52 -29.01 7.91 25.60 0.20 -28.81 16 18 H 0.05 2.90 6.96 -2.91 -0.02 2.88 16 19 C 0.03 1.73 5.15 84.66 0.44 2.17 16 20 N -0.90 -47.61 9.42 21.45 0.20 -47.41 16 21 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 25 N -0.47 -17.14 3.21 -538.19 -1.73 -18.87 16 26 C 0.07 1.75 9.48 127.77 1.21 2.96 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.17 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.17 0.42 6.60 -2.39 -0.02 0.40 16 33 H 0.18 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 35 H 0.05 1.42 8.10 -2.38 -0.02 1.40 16 36 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.13 1.12 6.58 -2.39 -0.02 1.11 16 38 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 39 H 0.08 3.84 6.25 -2.39 -0.01 3.82 16 40 H 0.04 1.62 5.74 -2.39 -0.01 1.61 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.05 1.82 5.53 -2.39 -0.01 1.81 16 44 H 0.08 3.94 6.06 -2.38 -0.01 3.93 16 45 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 46 H 0.09 2.00 8.01 -2.39 -0.02 1.98 16 47 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.10 2.43 4.76 -2.39 -0.01 2.42 16 Total: -1.00 -87.47 390.89 0.56 -86.90 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.96 Total: 5.22 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 8.72 Total: -5.76 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -6.27 Total: -116.03 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -4.61 Total: -52.91 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.27 Total: 35.71 kcal Total: -87.47 0.56 -86.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772162634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.079 kcal (2) G-P(sol) polarization free energy of solvation -87.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds