Wall clock time and date at job start Wed Apr 1 2020 03:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47205 * 2 1 4 4 C 1.36450 * 127.13899 * 92.03358 * 3 2 1 5 5 N 1.38590 * 126.47269 * 359.97438 * 4 3 2 6 6 C 1.46896 * 111.00000 * 289.06460 * 5 4 3 7 7 C 1.46898 * 110.99831 * 165.10904 * 5 4 3 8 8 C 1.52995 * 109.47245 * 189.99976 * 7 5 4 9 9 S 1.81401 * 109.47232 * 180.02562 * 8 7 5 10 10 C 1.81404 * 101.92048 * 180.02562 * 9 8 7 11 11 O 1.42100 * 108.57803 * 294.48630 * 9 8 7 12 12 O 1.42095 * 108.57973 * 65.51775 * 9 8 7 13 13 N 1.31220 * 107.05313 * 180.26221 * 4 3 2 14 14 N 1.28523 * 109.85844 * 359.73939 * 13 4 3 15 15 C 1.30293 * 110.05680 * 359.97438 * 14 13 4 16 16 C 1.50699 * 126.34661 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47205 * 234.07378 * 16 15 14 18 18 C 1.53006 * 109.46778 * 114.07788 * 16 15 14 19 19 C 1.50690 * 109.47418 * 354.07790 * 16 15 14 20 20 H 1.08007 * 120.00395 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00161 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00174 * 359.72381 * 21 19 16 23 23 Si 1.86801 * 119.99904 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47336 * 60.00065 * 23 21 19 25 25 H 1.48500 * 109.46816 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47113 * 299.99946 * 23 21 19 27 27 H 1.09001 * 109.46560 * 307.72712 * 1 2 3 28 28 H 1.08993 * 109.46991 * 67.72691 * 1 2 3 29 29 H 1.08994 * 109.46926 * 187.73681 * 1 2 3 30 30 H 1.08994 * 109.46769 * 239.99669 * 2 1 3 31 31 H 1.09001 * 109.47029 * 119.99802 * 2 1 3 32 32 H 1.09004 * 109.47249 * 70.21232 * 6 5 4 33 33 H 1.09002 * 109.46809 * 190.20768 * 6 5 4 34 34 H 1.09000 * 109.47305 * 310.20633 * 6 5 4 35 35 H 1.09001 * 109.47303 * 310.00572 * 7 5 4 36 36 H 1.09006 * 109.46848 * 70.00433 * 7 5 4 37 37 H 1.09001 * 109.47456 * 300.00502 * 8 7 5 38 38 H 1.09006 * 109.46824 * 60.00442 * 8 7 5 39 39 H 1.08990 * 109.47222 * 59.99738 * 10 9 8 40 40 H 1.09001 * 109.47269 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.46675 * 299.99635 * 10 9 8 42 42 H 1.08996 * 109.47215 * 169.91359 * 17 16 15 43 43 H 1.08997 * 109.47411 * 289.91329 * 17 16 15 44 44 H 1.09000 * 109.46799 * 49.91252 * 17 16 15 45 45 H 1.09000 * 109.46793 * 304.28293 * 18 16 15 46 46 H 1.09002 * 109.47010 * 64.28427 * 18 16 15 47 47 H 1.09005 * 109.46508 * 184.28258 * 18 16 15 48 48 H 0.97001 * 120.00450 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3294 2.1450 1.0871 5 7 2.2431 1.7608 2.4158 6 6 0.8416 1.6435 2.8399 7 6 2.9790 2.6916 3.2818 8 6 3.0734 2.1087 4.6932 9 16 3.9816 3.2585 5.7628 10 6 3.9718 2.3806 7.3503 11 8 5.3228 3.3430 5.3010 12 8 3.2182 4.4492 5.8988 13 7 2.7198 3.3142 0.6369 14 7 2.6769 3.3239 -0.6476 15 6 2.2607 2.1711 -1.0896 16 6 2.0734 1.7829 -2.5336 17 6 0.6489 1.2649 -2.7418 18 6 3.0740 0.6850 -2.9004 19 6 2.3037 2.9860 -3.4112 20 1 2.5598 3.9370 -2.9676 21 6 2.1877 2.8730 -4.7804 22 7 1.8813 1.7140 -5.3209 23 14 2.4725 4.3647 -5.8682 24 1 3.8547 4.8684 -5.6657 25 1 2.2892 3.9818 -7.2912 26 1 1.5005 5.4296 -5.5124 27 1 -0.3632 0.6289 0.8128 28 1 -0.3633 0.3895 -0.9509 29 1 -0.3633 -1.0183 0.1383 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.3871 0.7782 2.3572 33 1 0.7986 1.5201 3.9221 34 1 0.2991 2.5450 2.5552 35 1 3.9822 2.8427 2.8832 36 1 2.4546 3.6465 3.3174 37 1 2.0703 1.9576 5.0918 38 1 3.5979 1.1538 4.6576 39 1 4.4703 1.4181 7.2362 40 1 4.4972 2.9753 8.0976 41 1 2.9423 2.2209 7.6707 42 1 0.4550 1.1537 -3.8086 43 1 0.5380 0.2987 -2.2497 44 1 -0.0612 1.9734 -2.3154 45 1 4.0853 1.0268 -2.6803 46 1 2.8589 -0.2116 -2.3191 47 1 2.9904 0.4577 -3.9632 48 1 1.7992 1.6345 -6.2842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772189563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:46 Heat of formation + Delta-G solvation = 36.069482 kcal Electronic energy + Delta-G solvation = -29575.255994 eV Core-core repulsion = 25602.614301 eV Total energy + Delta-G solvation = -3972.641693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36300 -37.96718 -37.26154 -36.29528 -36.11297 -34.77991 -31.87946 -31.04429 -30.30449 -29.98393 -28.71578 -26.25814 -25.99828 -25.16279 -23.79695 -23.05829 -21.63781 -20.19012 -19.18829 -19.05828 -17.58898 -16.69976 -16.58695 -16.18276 -16.08665 -15.87635 -15.25573 -15.05715 -14.94372 -14.49428 -14.24685 -13.71434 -13.68377 -13.60173 -13.35602 -12.89288 -12.83415 -12.66737 -12.39273 -12.33077 -12.25963 -11.97590 -11.79633 -11.61200 -11.41066 -11.37471 -11.36474 -10.97026 -10.94007 -10.78558 -10.59697 -10.40595 -10.23769 -10.04176 -9.98453 -9.79054 -9.57137 -9.18210 -8.75669 -8.35620 -7.81137 -6.02614 -4.08993 -0.40293 2.38524 2.40017 2.70226 3.30218 3.38025 3.39891 3.47373 3.64271 3.64680 3.90710 4.21599 4.31449 4.36592 4.45155 4.61983 4.81815 4.88362 5.04468 5.11840 5.18561 5.19810 5.23297 5.26643 5.36798 5.41791 5.51326 5.58471 5.71673 5.75098 5.88709 6.07049 6.17327 6.41854 6.54710 6.62432 6.68327 6.71093 6.77370 7.11123 7.18387 7.33426 7.58774 7.78749 7.85106 8.10108 8.31919 8.98301 9.52701 9.63119 11.00196 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002771 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.388358 B =10103.528486 C =11029.779562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 N -0.475 5.475 4 C 0.306 3.694 5 N -0.446 5.446 6 C 0.012 3.988 7 C 0.084 3.916 8 C -0.616 4.616 9 S 2.426 3.574 10 C -0.656 4.656 11 O -0.932 6.932 12 O -0.935 6.935 13 N -0.325 5.325 14 N -0.286 5.286 15 C 0.243 3.757 16 C 0.147 3.853 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.491 4.491 20 H 0.076 0.924 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.010 0.990 47 H 0.101 0.899 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -8.421 22.173 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.018 4.018 3 N -0.169 5.169 4 C -0.050 4.050 5 N -0.170 5.170 6 C -0.136 4.136 7 C -0.044 4.044 8 C -0.744 4.744 9 S 2.607 3.393 10 C -0.805 4.805 11 O -0.929 6.929 12 O -0.932 6.932 13 N -0.170 5.170 14 N -0.123 5.123 15 C -0.024 4.024 16 C 0.144 3.856 17 C -0.200 4.200 18 C -0.192 4.192 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.138 4.138 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.119 0.881 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.386 -6.711 21.860 22.909 hybrid contribution -1.066 -0.900 -0.161 1.404 sum -2.452 -7.611 21.699 23.125 Atomic orbital electron populations 1.22650 0.94616 1.02724 1.04718 1.21876 0.95395 0.79885 1.04660 1.46323 1.51297 1.13488 1.05833 1.22219 1.06568 0.89331 0.86909 1.58553 1.13656 1.47945 0.96876 1.22802 0.86666 1.02453 1.01648 1.21572 1.01436 0.93477 0.87927 1.30561 1.15534 1.17877 1.10443 1.07736 0.76167 0.77168 0.78273 1.30279 1.11540 1.15565 1.23117 1.93631 1.34006 1.85895 1.79383 1.93620 1.72608 1.41319 1.85659 1.74556 1.22035 1.14922 1.05456 1.74081 1.19192 1.18485 1.00535 1.26202 0.97096 0.86735 0.92325 1.16901 0.93412 0.95982 0.79258 1.22194 0.96426 0.96243 1.05163 1.21952 0.97671 0.94987 1.04580 1.21062 1.46346 0.95244 0.90287 0.90537 1.24865 0.94952 0.96220 0.97797 1.69749 1.49123 1.23250 1.11357 0.86495 0.79103 0.82797 0.78722 1.20098 1.21473 1.20217 0.92309 0.89372 0.90913 0.87990 0.89386 0.90070 0.90114 0.93874 0.87912 0.91122 0.84850 0.83916 0.85253 0.85189 0.85378 0.88208 0.95622 0.95500 0.95032 0.97092 0.88080 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.44 37.16 0.35 -1.96 16 2 C 0.10 1.48 5.44 -4.04 -0.02 1.46 16 3 N -0.47 -8.81 2.81 -114.08 -0.32 -9.13 16 4 C 0.31 5.67 6.87 -318.86 -2.19 3.48 16 5 N -0.45 -6.09 4.78 -182.38 -0.87 -6.96 16 6 C 0.01 0.12 9.20 60.06 0.55 0.68 16 7 C 0.08 1.05 4.38 -3.83 -0.02 1.03 16 8 C -0.62 -4.11 5.76 37.15 0.21 -3.90 16 9 S 2.43 18.22 5.36 -107.50 -0.58 17.64 16 10 C -0.66 -2.03 10.62 101.05 1.07 -0.96 16 11 O -0.93 -11.17 18.10 -57.83 -1.05 -12.21 16 12 O -0.94 -10.81 18.10 -57.83 -1.05 -11.85 16 13 N -0.33 -7.28 11.39 30.32 0.35 -6.93 16 14 N -0.29 -7.16 11.00 32.99 0.36 -6.80 16 15 C 0.24 5.56 6.32 -154.02 -0.97 4.59 16 16 C 0.15 3.49 0.50 -156.81 -0.08 3.41 16 17 C -0.14 -3.09 6.85 37.16 0.25 -2.84 16 18 C -0.13 -3.02 8.19 37.16 0.30 -2.72 16 19 C -0.49 -13.26 7.91 -34.44 -0.27 -13.53 16 20 H 0.08 2.20 6.95 -52.48 -0.36 1.84 16 21 C 0.06 1.63 5.10 -17.82 -0.09 1.54 16 22 N -0.90 -23.41 9.31 55.43 0.52 -22.89 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.06 0.69 5.75 -51.93 -0.30 0.39 16 28 H 0.09 1.27 4.65 -51.93 -0.24 1.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.49 4.95 -51.93 -0.26 1.24 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.79 5.10 -51.93 -0.27 0.53 16 33 H 0.08 0.56 5.97 -51.93 -0.31 0.25 16 34 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.10 1.45 7.98 -51.93 -0.41 1.04 16 36 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.13 0.50 6.30 -51.92 -0.33 0.18 16 38 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 42 H 0.10 2.40 5.88 -51.93 -0.31 2.10 16 43 H 0.03 0.47 4.35 -51.93 -0.23 0.24 16 44 H 0.03 0.58 7.89 -51.93 -0.41 0.17 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.01 0.20 5.76 -51.93 -0.30 -0.10 16 47 H 0.10 2.47 5.95 -51.93 -0.31 2.16 16 48 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -36.95 377.25 -9.83 -46.78 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.96 Total: 0.06 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.90 Total: -9.72 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.03 Total: -52.72 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -2.09 Total: -24.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 18.22 SS G_CDS: -0.58 Total: 17.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.95 -9.83 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772189563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.851 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds