Wall clock time and date at job start Wed Apr 1 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.47205 * 2 1 4 4 C 1.36450 * 127.13899 * 92.03358 * 3 2 1 5 5 N 1.38590 * 126.47269 * 359.97438 * 4 3 2 6 6 C 1.46896 * 111.00000 * 289.06460 * 5 4 3 7 7 C 1.46898 * 110.99831 * 165.10904 * 5 4 3 8 8 C 1.52995 * 109.47245 * 189.99976 * 7 5 4 9 9 S 1.81401 * 109.47232 * 180.02562 * 8 7 5 10 10 C 1.81404 * 101.92048 * 180.02562 * 9 8 7 11 11 O 1.42100 * 108.57803 * 294.48630 * 9 8 7 12 12 O 1.42095 * 108.57973 * 65.51775 * 9 8 7 13 13 N 1.31220 * 107.05313 * 180.26221 * 4 3 2 14 14 N 1.28523 * 109.85844 * 359.73939 * 13 4 3 15 15 C 1.30293 * 110.05680 * 359.97438 * 14 13 4 16 16 C 1.50699 * 126.34661 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47205 * 234.07378 * 16 15 14 18 18 C 1.53006 * 109.46778 * 114.07788 * 16 15 14 19 19 C 1.50690 * 109.47418 * 354.07790 * 16 15 14 20 20 H 1.08007 * 120.00395 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00161 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00174 * 359.72381 * 21 19 16 23 23 Si 1.86801 * 119.99904 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47336 * 60.00065 * 23 21 19 25 25 H 1.48500 * 109.46816 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47113 * 299.99946 * 23 21 19 27 27 H 1.09001 * 109.46560 * 307.72712 * 1 2 3 28 28 H 1.08993 * 109.46991 * 67.72691 * 1 2 3 29 29 H 1.08994 * 109.46926 * 187.73681 * 1 2 3 30 30 H 1.08994 * 109.46769 * 239.99669 * 2 1 3 31 31 H 1.09001 * 109.47029 * 119.99802 * 2 1 3 32 32 H 1.09004 * 109.47249 * 70.21232 * 6 5 4 33 33 H 1.09002 * 109.46809 * 190.20768 * 6 5 4 34 34 H 1.09000 * 109.47305 * 310.20633 * 6 5 4 35 35 H 1.09001 * 109.47303 * 310.00572 * 7 5 4 36 36 H 1.09006 * 109.46848 * 70.00433 * 7 5 4 37 37 H 1.09001 * 109.47456 * 300.00502 * 8 7 5 38 38 H 1.09006 * 109.46824 * 60.00442 * 8 7 5 39 39 H 1.08990 * 109.47222 * 59.99738 * 10 9 8 40 40 H 1.09001 * 109.47269 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.46675 * 299.99635 * 10 9 8 42 42 H 1.08996 * 109.47215 * 169.91359 * 17 16 15 43 43 H 1.08997 * 109.47411 * 289.91329 * 17 16 15 44 44 H 1.09000 * 109.46799 * 49.91252 * 17 16 15 45 45 H 1.09000 * 109.46793 * 304.28293 * 18 16 15 46 46 H 1.09002 * 109.47010 * 64.28427 * 18 16 15 47 47 H 1.09005 * 109.46508 * 184.28258 * 18 16 15 48 48 H 0.97001 * 120.00450 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3294 2.1450 1.0871 5 7 2.2431 1.7608 2.4158 6 6 0.8416 1.6435 2.8399 7 6 2.9790 2.6916 3.2818 8 6 3.0734 2.1087 4.6932 9 16 3.9816 3.2585 5.7628 10 6 3.9718 2.3806 7.3503 11 8 5.3228 3.3430 5.3010 12 8 3.2182 4.4492 5.8988 13 7 2.7198 3.3142 0.6369 14 7 2.6769 3.3239 -0.6476 15 6 2.2607 2.1711 -1.0896 16 6 2.0734 1.7829 -2.5336 17 6 0.6489 1.2649 -2.7418 18 6 3.0740 0.6850 -2.9004 19 6 2.3037 2.9860 -3.4112 20 1 2.5598 3.9370 -2.9676 21 6 2.1877 2.8730 -4.7804 22 7 1.8813 1.7140 -5.3209 23 14 2.4725 4.3647 -5.8682 24 1 3.8547 4.8684 -5.6657 25 1 2.2892 3.9818 -7.2912 26 1 1.5005 5.4296 -5.5124 27 1 -0.3632 0.6289 0.8128 28 1 -0.3633 0.3895 -0.9509 29 1 -0.3633 -1.0183 0.1383 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.3871 0.7782 2.3572 33 1 0.7986 1.5201 3.9221 34 1 0.2991 2.5450 2.5552 35 1 3.9822 2.8427 2.8832 36 1 2.4546 3.6465 3.3174 37 1 2.0703 1.9576 5.0918 38 1 3.5979 1.1538 4.6576 39 1 4.4703 1.4181 7.2362 40 1 4.4972 2.9753 8.0976 41 1 2.9423 2.2209 7.6707 42 1 0.4550 1.1537 -3.8086 43 1 0.5380 0.2987 -2.2497 44 1 -0.0612 1.9734 -2.3154 45 1 4.0853 1.0268 -2.6803 46 1 2.8589 -0.2116 -2.3191 47 1 2.9904 0.4577 -3.9632 48 1 1.7992 1.6345 -6.2842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772189563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:45 Heat of formation + Delta-G solvation = 8.875708 kcal Electronic energy + Delta-G solvation = -29576.435204 eV Core-core repulsion = 25602.614301 eV Total energy + Delta-G solvation = -3973.820903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.91909 -39.09130 -37.98591 -37.76944 -37.01489 -36.28993 -33.37684 -32.33953 -31.55651 -30.31289 -30.14948 -27.78863 -27.39265 -27.04421 -25.01477 -24.19312 -23.22195 -21.51682 -20.70815 -19.80326 -18.66618 -17.91716 -17.59897 -17.46085 -17.04307 -16.99505 -16.75471 -16.44754 -16.02617 -15.70030 -15.43934 -15.08689 -14.60710 -14.45728 -14.14011 -13.97441 -13.85268 -13.63253 -13.53794 -13.37974 -13.23517 -13.11895 -13.10332 -13.01241 -12.80809 -12.64766 -12.54620 -12.40482 -12.23389 -12.06570 -12.00414 -11.95170 -11.83318 -11.73111 -11.51365 -11.39725 -11.07701 -10.70438 -10.52235 -10.34434 -9.33487 -8.05294 -6.16643 -0.94838 0.92789 1.34160 1.43758 1.44503 1.53995 1.90316 1.99800 2.46616 2.56544 2.90390 3.13597 3.19834 3.50132 3.65183 3.74225 3.78807 3.97833 4.10498 4.17327 4.20877 4.26012 4.32831 4.36933 4.39880 4.50081 4.56443 4.63850 4.70539 4.78371 4.79352 4.83984 4.91043 4.97393 5.00826 5.04298 5.19731 5.28688 5.30777 5.49311 5.54442 5.57807 5.76796 6.00829 6.08659 6.31087 6.42034 6.86306 7.48984 7.97578 8.94868 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002771 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.388358 B =10103.528486 C =11029.779562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.094 3.906 3 N -0.469 5.469 4 C 0.328 3.672 5 N -0.433 5.433 6 C 0.005 3.995 7 C 0.072 3.928 8 C -0.598 4.598 9 S 2.417 3.583 10 C -0.622 4.622 11 O -0.992 6.992 12 O -0.989 6.989 13 N -0.372 5.372 14 N -0.337 5.337 15 C 0.227 3.773 16 C 0.144 3.856 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.516 4.516 20 H 0.046 0.954 21 C 0.033 3.967 22 N -0.898 5.898 23 Si 0.944 3.056 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.281 1.281 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -12.048 25.373 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 N -0.163 5.163 4 C -0.029 4.029 5 N -0.158 5.158 6 C -0.141 4.141 7 C -0.056 4.056 8 C -0.727 4.727 9 S 2.604 3.396 10 C -0.776 4.776 11 O -0.989 6.989 12 O -0.986 6.986 13 N -0.216 5.216 14 N -0.174 5.174 15 C -0.043 4.043 16 C 0.141 3.859 17 C -0.184 4.184 18 C -0.181 4.181 19 C -0.555 4.555 20 H 0.064 0.936 21 C -0.167 4.167 22 N -0.538 5.538 23 Si 0.771 3.229 24 H -0.209 1.209 25 H -0.199 1.199 26 H -0.207 1.207 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.915 -10.328 25.025 27.229 hybrid contribution -0.608 0.138 -0.971 1.154 sum -3.523 -10.190 24.055 26.361 Atomic orbital electron populations 1.22608 0.92792 1.05168 1.03504 1.22318 0.96887 0.77428 1.06068 1.46452 1.50708 1.14686 1.04443 1.22769 1.03123 0.88138 0.88916 1.58856 1.15735 1.46985 0.94254 1.23058 0.84060 1.02164 1.04856 1.21644 0.99506 0.93530 0.90966 1.30436 1.18194 1.18125 1.05979 1.07589 0.74513 0.77353 0.80175 1.29995 1.14406 1.15656 1.17573 1.93560 1.36742 1.87093 1.81534 1.93554 1.73052 1.45085 1.86895 1.74436 1.24934 1.17603 1.04615 1.73949 1.20825 1.20514 1.02118 1.25854 0.98262 0.87232 0.92930 1.16815 0.94547 0.94971 0.79556 1.22009 0.94844 0.97746 1.03815 1.21786 0.96383 0.96043 1.03860 1.21169 1.47318 0.95606 0.91433 0.93566 1.25312 0.94878 0.98127 0.98377 1.69812 1.48735 1.23670 1.11553 0.85836 0.78239 0.80616 0.78197 1.20916 1.19918 1.20716 0.91795 0.91891 0.86905 0.88399 0.86110 0.88515 0.85363 0.95818 0.90888 0.92888 0.80803 0.80828 0.82356 0.84446 0.82061 0.90484 0.91977 0.96602 0.96930 0.93682 0.89867 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 9.44 71.99 0.68 -3.11 16 2 C 0.09 2.35 5.44 86.38 0.47 2.82 16 3 N -0.47 -17.08 2.81 -514.84 -1.45 -18.53 16 4 C 0.33 12.14 6.87 260.11 1.79 13.93 16 5 N -0.43 -10.93 4.78 -730.92 -3.49 -14.43 16 6 C 0.00 0.08 9.20 127.69 1.18 1.26 16 7 C 0.07 1.75 4.38 86.30 0.38 2.13 16 8 C -0.60 -5.98 5.76 71.98 0.41 -5.57 16 9 S 2.42 33.38 5.36 -56.49 -0.30 33.08 16 10 C -0.62 -0.82 10.62 113.37 1.20 0.39 16 11 O -0.99 -24.55 18.10 -127.37 -2.30 -26.86 16 12 O -0.99 -23.13 18.10 -127.37 -2.31 -25.44 16 13 N -0.37 -17.52 11.39 -58.00 -0.66 -18.18 16 14 N -0.34 -17.89 11.00 -49.54 -0.55 -18.43 16 15 C 0.23 10.66 6.32 137.64 0.87 11.53 16 16 C 0.14 6.99 0.50 -53.67 -0.03 6.96 16 17 C -0.13 -5.50 6.85 71.98 0.49 -5.01 16 18 C -0.12 -5.59 8.19 71.98 0.59 -5.00 16 19 C -0.52 -29.20 7.91 25.60 0.20 -29.00 16 20 H 0.05 2.84 6.95 -2.91 -0.02 2.82 16 21 C 0.03 1.76 5.10 84.66 0.43 2.19 16 22 N -0.90 -47.54 9.31 21.45 0.20 -47.34 16 23 Si 0.94 44.94 29.54 68.60 2.03 46.96 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 H 0.06 1.27 5.75 -2.39 -0.01 1.25 16 28 H 0.06 1.65 4.65 -2.39 -0.01 1.64 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 2.56 4.95 -2.39 -0.01 2.55 16 31 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.10 1.42 5.10 -2.38 -0.01 1.40 16 33 H 0.13 1.01 5.97 -2.39 -0.01 1.00 16 34 H 0.02 0.52 8.05 -2.39 -0.02 0.50 16 35 H 0.07 2.19 7.98 -2.39 -0.02 2.17 16 36 H 0.05 1.46 8.12 -2.38 -0.02 1.44 16 37 H 0.17 0.29 6.30 -2.39 -0.02 0.27 16 38 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.16 -0.54 8.14 -2.40 -0.02 -0.56 16 40 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.16 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.08 3.73 5.88 -2.39 -0.01 3.72 16 43 H 0.06 2.19 4.35 -2.39 -0.01 2.18 16 44 H 0.01 0.68 7.89 -2.39 -0.02 0.66 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.04 1.69 5.76 -2.39 -0.01 1.68 16 47 H 0.08 4.11 5.95 -2.38 -0.01 4.09 16 48 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -90.08 377.25 0.82 -89.26 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.99 Total: 6.39 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 8.67 Total: -6.48 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -5.94 Total: -116.91 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -4.61 Total: -52.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 33.38 SS G_CDS: -0.30 Total: 33.08 kcal Total: -90.08 0.82 -89.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772189563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.136 kcal (2) G-P(sol) polarization free energy of solvation -90.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds