Wall clock time and date at job start Wed Apr 1 2020 03:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36640 * 126.60399 * 2 1 4 4 C 1.47517 * 125.76473 * 359.97438 * 3 2 1 5 5 O 1.21592 * 119.99996 * 354.31512 * 4 3 2 6 6 N 1.34776 * 119.99790 * 174.31390 * 4 3 2 7 7 C 1.46500 * 120.00005 * 3.81706 * 6 4 3 8 8 C 1.50704 * 109.47117 * 83.18474 * 7 6 4 9 9 H 1.07997 * 120.00073 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00058 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00262 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00071 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47054 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47438 * 119.99633 * 12 10 8 15 15 H 1.48505 * 109.47291 * 239.99709 * 12 10 8 16 16 C 1.46500 * 119.99883 * 183.82102 * 6 4 3 17 17 C 1.52997 * 109.47287 * 85.14673 * 16 6 4 18 18 C 1.53001 * 117.49654 * 243.74458 * 17 16 6 19 19 C 1.52999 * 117.49735 * 175.08518 * 17 16 6 20 20 N 1.34400 * 108.46641 * 180.26823 * 3 2 1 21 21 N 1.28752 * 109.57532 * 359.73307 * 20 3 2 22 22 N 1.35048 * 126.60693 * 179.81417 * 2 1 3 23 23 C 1.40359 * 126.60606 * 0.02562 * 22 2 1 24 24 C 1.40390 * 125.96660 * 154.43131 * 23 22 2 25 25 C 1.35228 * 107.87154 * 179.82571 * 24 23 22 26 26 N 1.34982 * 107.86156 * 0.43227 * 25 24 23 27 27 C 1.46495 * 125.98277 * 179.75015 * 26 25 24 28 28 N 1.31220 * 125.97165 * 334.73790 * 23 22 2 29 29 H 1.08997 * 109.47346 * 270.18249 * 1 2 3 30 30 H 1.08996 * 109.46831 * 30.18835 * 1 2 3 31 31 H 1.09005 * 109.46653 * 150.18333 * 1 2 3 32 32 H 1.09002 * 109.47534 * 203.17826 * 7 6 4 33 33 H 1.08997 * 109.47663 * 323.18406 * 7 6 4 34 34 H 0.97002 * 120.00311 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.46817 * 205.14921 * 16 6 4 36 36 H 1.09001 * 109.46925 * 325.13996 * 16 6 4 37 37 H 1.08998 * 115.54974 * 29.41543 * 17 16 6 38 38 H 1.09002 * 117.49680 * 0.02562 * 18 17 16 39 39 H 1.08998 * 117.49795 * 145.01710 * 18 17 16 40 40 H 1.08994 * 117.50251 * 214.97446 * 19 17 16 41 41 H 1.09003 * 117.49734 * 0.02562 * 19 17 16 42 42 H 1.08000 * 126.06537 * 359.97438 * 24 23 22 43 43 H 1.07998 * 126.07134 * 180.15620 * 25 24 23 44 44 H 1.09007 * 109.46671 * 269.99898 * 27 26 25 45 45 H 1.08997 * 109.47000 * 29.99398 * 27 26 25 46 46 H 1.09000 * 109.47446 * 149.99982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3217 1.0969 0.0000 4 6 1.8749 2.5028 -0.0005 5 8 0.6922 2.7648 -0.1053 6 7 2.7777 3.4968 0.1152 7 6 4.2086 3.1855 0.1573 8 6 4.7282 3.0197 -1.2476 9 1 4.0594 3.1343 -2.0877 10 6 6.0572 2.7207 -1.4603 11 7 6.8717 2.5806 -0.4372 12 14 6.7011 2.5145 -3.2016 13 1 5.5918 2.7206 -4.1672 14 1 7.7707 3.5128 -3.4554 15 1 7.2525 1.1455 -3.3667 16 6 2.3281 4.8886 0.1989 17 6 1.9901 5.2288 1.6518 18 6 0.5373 5.5837 1.9746 19 6 1.6092 6.6765 1.9680 20 7 3.5990 0.6785 -0.0060 21 7 3.6313 -0.6086 -0.0040 22 7 2.3123 -1.0841 0.0035 23 6 1.9069 -2.4279 0.0074 24 6 2.6503 -3.5147 -0.4795 25 6 1.9179 -4.6359 -0.2917 26 7 0.7505 -4.2763 0.2828 27 6 -0.3402 -5.1808 0.6549 28 7 0.7647 -2.8870 0.4615 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5110 32 1 4.7431 3.9985 0.6486 33 1 4.3632 2.2608 0.7133 34 1 7.8068 2.3706 -0.5869 35 1 3.1208 5.5483 -0.1539 36 1 1.4416 5.0219 -0.4212 37 1 2.5539 4.6804 2.4064 38 1 -0.1778 5.5744 1.1520 39 1 0.1453 5.2691 2.9418 40 1 1.9219 7.0804 2.9309 41 1 1.5989 7.3864 1.1409 42 1 3.6337 -3.4647 -0.9231 43 1 2.2125 -5.6401 -0.5584 44 1 -1.0303 -5.2816 -0.1828 45 1 0.0692 -6.1587 0.9081 46 1 -0.8710 -4.7750 1.5162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293162078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:44 Heat of formation + Delta-G solvation = 175.722832 kcal Electronic energy + Delta-G solvation = -30340.527567 eV Core-core repulsion = 26270.790498 eV Total energy + Delta-G solvation = -4069.737069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.50825 -42.27244 -40.51770 -38.15520 -36.65889 -35.94453 -34.33238 -33.85661 -32.80503 -31.35517 -29.80930 -29.13397 -27.67606 -27.37807 -25.11428 -24.52601 -23.88092 -23.13155 -22.24943 -21.60607 -20.98761 -20.30846 -18.94066 -18.44471 -17.70670 -17.43130 -17.36068 -16.93881 -16.44962 -16.27697 -15.94638 -15.81916 -15.20770 -14.83950 -14.76307 -14.71848 -14.28784 -14.23995 -14.06192 -14.00295 -13.76247 -13.56302 -13.37276 -13.29397 -12.97736 -12.81027 -12.65001 -12.56394 -12.29215 -12.19278 -12.13636 -11.90896 -11.66225 -11.58776 -11.25004 -10.92028 -10.74456 -10.44375 -10.39357 -10.16555 -9.68327 -9.39638 -8.06275 -6.14445 -0.33419 0.49403 0.69360 0.83275 1.38090 1.40685 1.50257 1.57067 1.75192 2.21858 2.31356 2.49498 2.97875 3.17715 3.26717 3.31031 3.52351 3.65897 3.88951 3.90191 3.99328 4.05929 4.17165 4.36007 4.44077 4.46306 4.49604 4.52485 4.58226 4.66448 4.73586 4.75919 4.77680 4.81401 4.86703 4.98757 5.00229 5.05708 5.06229 5.32549 5.33055 5.50310 5.69780 5.81664 5.91464 5.92752 6.22975 6.26379 6.52550 6.86039 7.02235 7.29244 7.52042 9.01512 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.004027 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.143557 B = 6952.039744 C = 9549.204030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.134 3.866 3 C -0.120 4.120 4 C 0.601 3.399 5 O -0.566 6.566 6 N -0.584 5.584 7 C 0.247 3.753 8 C -0.516 4.516 9 H 0.038 0.962 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.942 3.058 13 H -0.276 1.276 14 H -0.272 1.272 15 H -0.284 1.284 16 C 0.151 3.849 17 C -0.186 4.186 18 C -0.166 4.166 19 C -0.154 4.154 20 N -0.156 5.156 21 N -0.089 5.089 22 N -0.298 5.298 23 C 0.262 3.738 24 C -0.277 4.277 25 C 0.105 3.895 26 N -0.349 5.349 27 C 0.090 3.910 28 N -0.308 5.308 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.016 0.984 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.243 0.757 44 H 0.097 0.903 45 H 0.132 0.868 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.032 -14.467 3.376 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.003 4.003 3 C -0.258 4.258 4 C 0.388 3.612 5 O -0.448 6.448 6 N -0.312 5.312 7 C 0.126 3.874 8 C -0.555 4.555 9 H 0.057 0.943 10 C -0.169 4.169 11 N -0.554 5.554 12 Si 0.769 3.231 13 H -0.201 1.201 14 H -0.198 1.198 15 H -0.210 1.210 16 C 0.029 3.971 17 C -0.206 4.206 18 C -0.203 4.203 19 C -0.192 4.192 20 N -0.029 5.029 21 N -0.068 5.068 22 N -0.078 5.078 23 C 0.011 3.989 24 C -0.308 4.308 25 C -0.043 4.043 26 N -0.133 5.133 27 C -0.049 4.049 28 N -0.138 5.138 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.173 0.827 43 H 0.259 0.741 44 H 0.116 0.884 45 H 0.150 0.850 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.164 -14.547 3.946 22.102 hybrid contribution 1.001 0.011 -1.212 1.572 sum -15.163 -14.537 2.734 21.183 Atomic orbital electron populations 1.20665 0.82185 1.05144 1.05204 1.22438 0.97385 0.85074 0.95419 1.21407 0.89035 0.96124 1.19244 1.16728 0.85038 0.82924 0.76520 1.90606 1.16199 1.83856 1.54094 1.48045 1.08401 1.06051 1.68676 1.19442 0.74241 0.96787 0.96904 1.21365 0.94147 1.47746 0.92256 0.94341 1.25400 0.96927 0.94862 0.99750 1.70019 1.04975 1.49175 1.31219 0.85761 0.78326 0.77729 0.81328 1.20108 1.19753 1.21006 1.21018 1.00085 0.81070 0.94935 1.22589 1.00216 1.00738 0.97037 1.22999 0.91127 1.03077 1.03067 1.23040 1.01970 0.90272 1.03883 1.75301 1.18642 1.02219 1.06772 1.82249 0.94877 1.04456 1.25202 1.46907 1.06878 1.03467 1.50563 1.18829 0.95471 0.81687 1.02914 1.21530 1.04866 0.90084 1.14312 1.23262 0.84714 1.01421 0.94879 1.48808 1.15887 1.02908 1.45698 1.22496 0.87281 0.91740 1.03366 1.77400 1.18572 0.92331 1.25477 0.87950 0.87772 0.89238 0.96604 0.93162 0.92885 0.90107 0.90628 0.89600 0.88799 0.88490 0.87386 0.87571 0.82712 0.74090 0.88433 0.84988 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 9.21 71.24 0.66 -1.60 16 2 C 0.13 5.33 6.99 41.69 0.29 5.63 16 3 C -0.12 -5.62 6.67 40.82 0.27 -5.35 16 4 C 0.60 28.15 7.57 86.69 0.66 28.80 16 5 O -0.57 -25.38 14.34 -4.00 -0.06 -25.44 16 6 N -0.58 -27.46 2.49 -829.94 -2.06 -29.52 16 7 C 0.25 13.36 4.74 85.63 0.41 13.76 16 8 C -0.52 -29.83 8.32 25.60 0.21 -29.62 16 9 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 10 C 0.03 1.77 5.46 84.65 0.46 2.23 16 11 N -0.91 -55.00 13.29 21.45 0.28 -54.72 16 12 Si 0.94 46.31 29.54 68.60 2.03 48.34 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 16 C 0.15 5.92 5.64 86.38 0.49 6.41 16 17 C -0.19 -6.25 5.98 -10.79 -0.06 -6.31 16 18 C -0.17 -4.62 10.18 30.62 0.31 -4.30 16 19 C -0.15 -3.89 10.25 30.62 0.31 -3.57 16 20 N -0.16 -8.07 8.05 -49.97 -0.40 -8.48 16 21 N -0.09 -4.22 13.71 37.02 0.51 -3.71 16 22 N -0.30 -11.86 3.82 -179.16 -0.68 -12.54 16 23 C 0.26 8.37 7.69 133.25 1.02 9.39 16 24 C -0.28 -6.94 10.78 22.10 0.24 -6.71 16 25 C 0.10 1.47 11.48 83.51 0.96 2.43 16 26 N -0.35 -5.55 4.01 -369.62 -1.48 -7.03 16 27 C 0.09 0.40 11.47 127.77 1.47 1.86 16 28 N -0.31 -8.16 11.19 -54.33 -0.61 -8.76 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.10 3.36 6.34 -2.39 -0.02 3.34 16 31 H 0.09 2.42 7.20 -2.38 -0.02 2.40 16 32 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 33 H 0.05 2.95 5.33 -2.39 -0.01 2.94 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.08 3.14 8.04 -2.39 -0.02 3.12 16 36 H 0.08 2.88 7.25 -2.39 -0.02 2.86 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 39 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.24 0.50 8.06 -2.91 -0.02 0.47 16 44 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -80.60 391.78 6.22 -74.38 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.01 Total: 14.43 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.69 Total: 13.05 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.45 Total: -124.76 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -80.60 6.22 -74.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293162078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.106 kcal (2) G-P(sol) polarization free energy of solvation -80.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds