Wall clock time and date at job start Wed Apr 1 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30369 * 125.91429 * 2 1 4 4 N 1.39911 * 109.13675 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.76109 * 180.02562 * 4 3 2 6 6 C 1.34742 * 108.47313 * 359.97438 * 4 3 2 7 7 N 1.39052 * 126.40572 * 180.26372 * 6 4 3 8 8 C 1.35946 * 126.10748 * 334.40351 * 7 6 4 9 9 C 1.35260 * 107.60211 * 179.87490 * 8 7 6 10 10 C 1.40004 * 107.97076 * 0.38906 * 9 8 7 11 11 N 1.30806 * 108.37980 * 359.75992 * 10 9 8 12 12 C 1.38988 * 107.18642 * 0.02562 * 6 4 3 13 13 C 1.47054 * 126.48637 * 179.97438 * 12 6 4 14 14 O 1.21652 * 119.99811 * 89.99270 * 13 12 6 15 15 N 1.34776 * 120.00059 * 269.99936 * 13 12 6 16 16 C 1.46966 * 120.59350 * 359.71658 * 15 13 12 17 17 C 1.53814 * 108.39771 * 124.75667 * 16 15 13 18 18 N 1.46966 * 108.57517 * 49.63888 * 17 16 15 19 19 C 1.36944 * 120.59296 * 124.62827 * 18 17 16 20 20 H 1.07999 * 119.99997 * 208.17320 * 19 18 17 21 21 C 1.38817 * 120.00023 * 28.16947 * 19 18 17 22 22 N 1.31618 * 119.99947 * 17.57034 * 21 19 18 23 23 Si 1.86794 * 119.99749 * 197.57607 * 21 19 18 24 24 H 1.48502 * 109.47604 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47248 * 120.00019 * 23 21 19 26 26 H 1.48503 * 109.46851 * 240.00118 * 23 21 19 27 27 C 1.46960 * 118.81343 * 304.64111 * 18 17 16 28 28 C 1.46962 * 120.59285 * 179.97438 * 15 13 12 29 29 H 1.09005 * 109.46776 * 269.97532 * 1 2 3 30 30 H 1.08994 * 109.46915 * 29.97978 * 1 2 3 31 31 H 1.08997 * 109.47019 * 149.97670 * 1 2 3 32 32 H 1.08999 * 109.47097 * 269.97368 * 5 4 3 33 33 H 1.08998 * 109.47072 * 29.97706 * 5 4 3 34 34 H 1.09004 * 109.47077 * 149.97568 * 5 4 3 35 35 H 1.08001 * 126.20238 * 0.02725 * 8 7 6 36 36 H 1.08004 * 126.01705 * 180.12739 * 9 8 7 37 37 H 1.07998 * 125.80867 * 179.73838 * 10 9 8 38 38 H 1.08999 * 109.60697 * 244.54023 * 16 15 13 39 39 H 1.09000 * 109.61064 * 5.05086 * 16 15 13 40 40 H 1.08999 * 109.74526 * 289.85211 * 17 16 15 41 41 H 1.08998 * 109.53265 * 169.29864 * 17 16 15 42 42 H 0.97001 * 120.00009 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.61429 * 295.48384 * 27 18 17 44 44 H 1.09001 * 109.75180 * 175.05916 * 27 18 17 45 45 H 1.09001 * 109.61427 * 354.94915 * 28 15 13 46 46 H 1.09005 * 109.60952 * 115.28769 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2718 1.0559 0.0000 4 7 3.6113 0.6520 -0.0006 5 6 4.7742 1.5430 -0.0002 6 6 3.6512 -0.6948 -0.0004 7 7 4.7943 -1.4866 0.0043 8 6 6.0188 -1.1286 -0.4652 9 6 6.8526 -2.1762 -0.2737 10 6 6.1188 -3.2092 0.3216 11 7 4.8882 -2.7980 0.4882 12 6 2.3361 -1.1446 -0.0003 13 6 1.8914 -2.5463 -0.0006 14 8 1.7077 -3.1264 1.0529 15 7 1.6873 -3.1883 -1.1679 16 6 1.8993 -2.4983 -2.4480 17 6 2.8966 -3.3196 -3.2829 18 7 2.4521 -4.7203 -3.2984 19 6 2.2439 -5.3724 -4.4845 20 1 1.5254 -6.1768 -4.5396 21 6 2.9565 -4.9994 -5.6159 22 7 4.0537 -4.2825 -5.4960 23 14 2.3580 -5.5151 -7.3086 24 1 1.1109 -6.3097 -7.1720 25 1 2.0879 -4.3062 -8.1276 26 1 3.3996 -6.3399 -7.9719 27 6 2.2347 -5.4086 -2.0182 28 6 1.2434 -4.5892 -1.1834 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 5.0626 1.7644 -1.0278 33 1 4.5213 2.4703 0.5139 34 1 5.6039 1.0574 0.5135 35 1 6.2793 -0.1787 -0.9083 36 1 7.8993 -2.2114 -0.5378 37 1 6.5031 -4.1804 0.5962 38 1 0.9520 -2.4167 -2.9809 39 1 2.3055 -1.5036 -2.2646 40 1 3.8896 -3.2558 -2.8379 41 1 2.9239 -2.9332 -4.3017 42 1 4.5514 -4.0216 -6.2866 43 1 3.1806 -5.4936 -1.4833 44 1 1.8264 -6.4029 -2.1993 45 1 1.2163 -4.9757 -0.1645 46 1 0.2490 -4.6530 -1.6254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330214590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:34 Heat of formation + Delta-G solvation = 151.289481 kcal Electronic energy + Delta-G solvation = -31892.235036 eV Core-core repulsion = 27821.438458 eV Total energy + Delta-G solvation = -4070.796579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.17393 -41.87293 -40.62353 -38.35696 -35.69623 -35.53358 -34.10865 -33.15278 -31.93382 -31.61543 -30.55691 -30.18643 -28.67161 -27.09758 -25.51385 -24.61593 -24.18688 -23.14235 -22.41441 -21.47247 -20.88304 -20.13652 -19.19655 -18.41449 -17.83425 -17.50804 -17.07772 -16.59480 -16.56653 -16.05946 -15.72298 -15.61947 -15.49031 -15.20613 -15.09842 -14.85000 -14.64253 -14.51467 -14.38546 -13.98693 -13.70815 -13.54499 -13.40309 -13.26603 -13.22201 -13.11549 -12.71070 -12.51430 -12.22179 -12.19225 -12.05408 -11.92764 -11.85354 -11.68232 -11.50219 -10.99036 -10.61848 -10.39812 -9.96149 -9.82187 -9.35417 -8.67842 -7.89233 -5.37450 -0.16249 0.50590 0.99716 1.29341 1.47168 1.50168 1.53795 1.60542 1.64131 1.75099 2.16449 2.51176 3.14578 3.25384 3.30618 3.55516 3.67974 3.76329 3.93278 4.08439 4.15894 4.19867 4.21243 4.23186 4.36470 4.44760 4.48552 4.51945 4.59626 4.62245 4.68362 4.71523 4.75531 4.80434 4.86867 4.91897 5.03335 5.12522 5.18692 5.36981 5.45408 5.53028 5.60606 5.64234 6.02253 6.22918 6.33542 6.46513 6.51523 7.08686 7.19762 7.76091 8.31687 9.16431 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004296 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.595681 B = 6516.859199 C = 7135.345606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.120 3.880 3 N -0.279 5.279 4 N -0.360 5.360 5 C 0.075 3.925 6 C 0.352 3.648 7 N -0.331 5.331 8 C 0.037 3.963 9 C -0.238 4.238 10 C 0.053 3.947 11 N -0.304 5.304 12 C -0.291 4.291 13 C 0.610 3.390 14 O -0.576 6.576 15 N -0.589 5.589 16 C 0.108 3.892 17 C 0.181 3.819 18 N -0.603 5.603 19 C -0.264 4.264 20 H 0.072 0.928 21 C -0.045 4.045 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.288 1.288 26 H -0.294 1.294 27 C 0.137 3.863 28 C 0.107 3.893 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.215 0.785 36 H 0.193 0.807 37 H 0.214 0.786 38 H 0.073 0.927 39 H 0.072 0.928 40 H -0.015 1.015 41 H 0.072 0.928 42 H 0.251 0.749 43 H 0.002 0.998 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 13.206 9.668 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 N -0.102 5.102 4 N -0.145 5.145 5 C -0.063 4.063 6 C 0.129 3.871 7 N -0.111 5.111 8 C -0.102 4.102 9 C -0.265 4.265 10 C -0.136 4.136 11 N -0.122 5.122 12 C -0.308 4.308 13 C 0.398 3.602 14 O -0.456 6.456 15 N -0.320 5.320 16 C -0.016 4.016 17 C 0.055 3.945 18 N -0.326 5.326 19 C -0.394 4.394 20 H 0.089 0.911 21 C -0.240 4.240 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.221 1.221 27 C 0.011 3.989 28 C -0.017 4.017 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.232 0.768 36 H 0.210 0.790 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.003 0.997 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.716 14.078 10.496 17.644 hybrid contribution 1.186 -1.185 -1.217 2.072 sum 2.902 12.894 9.279 16.148 Atomic orbital electron populations 1.20394 0.83558 1.04728 1.04614 1.22598 0.98368 0.87437 0.96241 1.77135 0.84685 1.20925 1.27409 1.48632 1.07551 1.01158 1.57110 1.22659 0.82949 0.94628 1.06113 1.17322 0.85573 0.83272 1.00948 1.45079 1.06162 1.11130 1.48767 1.23643 0.83201 1.03253 1.00075 1.22083 1.03124 0.92486 1.08852 1.24827 0.90081 1.01695 0.97000 1.77853 1.21864 0.90767 1.21702 1.19603 0.91276 0.94927 1.25022 1.17171 0.75620 0.84704 0.82753 1.90682 1.54097 1.68635 1.32208 1.47933 1.65630 1.12768 1.05704 1.22318 1.00383 0.95308 0.83611 1.20850 0.91510 0.84136 0.98042 1.44200 1.79086 1.08204 1.01151 1.19578 1.16290 1.16499 0.87028 0.91064 1.25792 0.95221 1.00913 1.02117 1.70189 1.15944 1.42920 1.28807 0.85195 0.77857 0.77370 0.79915 1.19044 1.21452 1.22103 1.21293 0.95414 0.95617 0.86614 1.22052 0.98114 0.80648 1.00867 0.88701 0.87746 0.90653 0.87446 0.86206 0.88004 0.76805 0.79012 0.77002 0.90912 0.90939 0.99706 0.91016 0.93982 0.98017 0.90538 0.89786 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 10.28 71.24 0.73 -0.95 16 2 C 0.12 3.57 7.26 43.54 0.32 3.88 16 3 N -0.28 -7.69 12.48 -46.68 -0.58 -8.27 16 4 N -0.36 -9.14 3.99 -364.76 -1.46 -10.60 16 5 C 0.08 0.99 9.96 127.77 1.27 2.26 16 6 C 0.35 11.39 7.56 132.30 1.00 12.39 16 7 N -0.33 -10.54 3.78 -191.04 -0.72 -11.27 16 8 C 0.04 0.85 9.81 83.37 0.82 1.67 16 9 C -0.24 -5.31 10.80 22.01 0.24 -5.07 16 10 C 0.05 1.51 12.02 85.27 1.02 2.53 16 11 N -0.30 -11.15 11.64 -56.95 -0.66 -11.81 16 12 C -0.29 -10.39 3.86 -20.02 -0.08 -10.46 16 13 C 0.61 24.87 6.35 86.56 0.55 25.42 16 14 O -0.58 -26.79 16.51 -4.20 -0.07 -26.86 16 15 N -0.59 -23.68 2.94 -821.50 -2.42 -26.10 16 16 C 0.11 4.34 6.53 86.57 0.57 4.90 16 17 C 0.18 8.88 5.53 86.56 0.48 9.35 16 18 N -0.60 -30.57 2.97 -697.41 -2.07 -32.64 16 19 C -0.26 -14.25 9.58 84.03 0.80 -13.44 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 21 C -0.04 -2.43 4.90 84.86 0.42 -2.02 16 22 N -0.93 -53.70 11.20 21.65 0.24 -53.46 16 23 Si 0.97 43.59 29.59 68.60 2.03 45.62 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 27 C 0.14 6.09 6.67 86.40 0.58 6.67 16 28 C 0.11 4.21 6.59 86.40 0.57 4.78 16 29 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.79 8.00 -2.39 -0.02 1.77 16 32 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.07 6.43 -2.39 -0.02 1.05 16 35 H 0.22 2.92 6.45 -2.91 -0.02 2.90 16 36 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.21 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.77 6.26 -2.39 -0.01 2.76 16 40 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.07 3.86 5.99 -2.39 -0.01 3.85 16 42 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.08 3.17 7.94 -2.39 -0.02 3.15 16 45 H 0.08 3.29 6.99 -2.39 -0.02 3.28 16 46 H 0.08 2.81 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -79.85 379.57 4.58 -75.27 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 1.01 Total: 18.19 kcal Atomic # 6 Polarization: 32.64 SS G_CDS: 9.28 Total: 41.92 kcal Atomic # 7 Polarization: -146.47 SS G_CDS: -7.67 Total: -154.14 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.07 Total: -26.86 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -79.85 4.58 -75.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330214590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.558 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds