Wall clock time and date at job start Wed Apr 1 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35368 * 126.38594 * 2 1 4 4 C 1.41501 * 105.50277 * 179.89640 * 3 2 1 5 5 C 1.47709 * 126.51775 * 180.10028 * 4 3 2 6 6 O 1.21568 * 120.00239 * 354.03650 * 5 4 3 7 7 N 1.34784 * 119.99758 * 174.04108 * 5 4 3 8 8 C 1.46498 * 120.00290 * 4.39040 * 7 5 4 9 9 C 1.50695 * 109.47122 * 83.70624 * 8 7 5 10 10 H 1.07999 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00245 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00552 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99928 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47264 * 89.99680 * 13 11 9 15 15 H 1.48496 * 109.47486 * 210.00549 * 13 11 9 16 16 H 1.48500 * 109.46995 * 329.99976 * 13 11 9 17 17 C 1.46494 * 119.99757 * 184.38965 * 7 5 4 18 18 C 1.53002 * 109.47105 * 89.99852 * 17 7 5 19 19 C 1.53000 * 109.47474 * 179.97438 * 18 17 7 20 20 N 1.46894 * 109.47551 * 180.02562 * 19 18 17 21 21 C 1.46901 * 111.00207 * 170.00115 * 20 19 18 22 22 C 1.46900 * 110.99695 * 293.95536 * 20 19 18 23 23 N 1.31815 * 106.96125 * 0.36209 * 4 3 2 24 24 N 1.28468 * 110.07629 * 359.77446 * 23 4 3 25 25 C 1.46497 * 124.88674 * 180.02562 * 24 23 4 26 26 F 1.39899 * 109.47081 * 119.96983 * 25 24 23 27 27 F 1.39904 * 109.46958 * 239.97445 * 25 24 23 28 28 H 1.08994 * 109.47600 * 269.69355 * 1 2 3 29 29 H 1.09002 * 109.47097 * 149.68841 * 1 2 3 30 30 H 1.09007 * 109.46838 * 29.69634 * 1 2 3 31 31 H 1.07998 * 127.24770 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47471 * 203.71309 * 8 7 5 33 33 H 1.09003 * 109.47080 * 323.71035 * 8 7 5 34 34 H 0.96998 * 120.00073 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.47565 * 209.99596 * 17 7 5 36 36 H 1.09004 * 109.47455 * 330.00297 * 17 7 5 37 37 H 1.08997 * 109.47546 * 299.99945 * 18 17 7 38 38 H 1.09002 * 109.47329 * 60.00009 * 18 17 7 39 39 H 1.09006 * 109.46919 * 300.00277 * 19 18 17 40 40 H 1.09002 * 109.46707 * 59.99785 * 19 18 17 41 41 H 1.09002 * 109.46793 * 60.00001 * 21 20 19 42 42 H 1.08999 * 109.46802 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.46881 * 299.99832 * 21 20 19 44 44 H 1.08998 * 109.47294 * 60.00039 * 22 20 19 45 45 H 1.09002 * 109.47450 * 180.02562 * 22 20 19 46 46 H 1.09006 * 109.47178 * 299.99773 * 22 20 19 47 47 H 1.09000 * 109.46962 * 359.97049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 0.0025 5 6 4.8765 1.3812 0.0055 6 8 4.8247 2.5909 -0.1033 7 7 6.0694 0.7661 0.1288 8 6 6.1393 -0.6968 0.1631 9 6 6.1399 -1.2328 -1.2454 10 1 6.0934 -0.5518 -2.0823 11 6 6.1998 -2.5926 -1.4656 12 7 6.2009 -3.0604 -2.6947 13 14 6.2795 -3.7705 -0.0179 14 1 4.9023 -4.1481 0.3894 15 1 7.0309 -4.9892 -0.4121 16 1 6.9688 -3.1106 1.1198 17 6 7.2962 1.5605 0.2286 18 6 7.5889 1.8643 1.6993 19 6 8.8705 2.6934 1.8037 20 7 9.1518 2.9846 3.2157 21 6 10.4894 3.5705 3.3761 22 6 8.1211 3.8609 3.7879 23 7 3.5419 -0.7297 -0.0042 24 7 2.3080 -1.0871 -0.0058 25 6 1.8375 -2.4745 -0.0122 26 9 1.0639 -2.7099 1.1294 27 9 1.0626 -2.6988 -1.1552 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5091 31 1 2.0057 2.1260 0.0004 32 1 7.0537 -1.0052 0.6696 33 1 5.2761 -1.0893 0.7007 34 1 6.2427 -4.0170 -2.8495 35 1 8.1277 1.0002 -0.1991 36 1 7.1691 2.4954 -0.3172 37 1 6.7575 2.4245 2.1271 38 1 7.7160 0.9294 2.2452 39 1 9.7018 2.1327 1.3760 40 1 8.7438 3.6283 1.2577 41 1 10.5494 4.4994 2.8090 42 1 10.6715 3.7766 4.4308 43 1 11.2392 2.8705 3.0075 44 1 7.1493 3.3722 3.7188 45 1 8.3539 4.0610 4.8338 46 1 8.0954 4.8004 3.2357 47 1 2.6941 -3.1486 -0.0160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341790628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:24 Heat of formation + Delta-G solvation = -29.381623 kcal Electronic energy + Delta-G solvation = -31549.194671 eV Core-core repulsion = 27019.874419 eV Total energy + Delta-G solvation = -4529.320252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.37958 -47.44314 -42.33045 -39.02197 -37.59503 -35.30874 -33.08988 -32.53071 -32.47765 -31.42996 -27.99696 -27.63827 -27.03572 -26.86089 -25.48665 -23.40868 -22.58077 -21.68331 -20.83040 -20.61462 -18.40633 -17.92150 -17.89135 -17.34956 -16.96857 -16.14084 -15.82220 -15.48349 -15.39056 -15.04201 -14.78869 -14.34340 -14.28887 -14.15937 -13.90609 -13.78784 -13.72752 -13.49059 -13.17478 -13.09390 -12.87059 -12.55267 -12.47932 -12.36447 -12.22597 -12.04200 -11.82739 -11.75232 -11.54301 -11.44480 -11.30416 -10.79743 -10.78461 -10.29309 -10.22145 -9.99926 -9.55907 -9.40916 -9.15016 -8.73507 -8.56984 -8.39618 -7.76219 -6.12545 -4.08963 1.87488 1.99469 2.36053 3.10472 3.25541 3.28219 3.51419 3.66738 3.91583 4.07604 4.21682 4.31385 4.62326 4.64523 4.95044 5.04326 5.07857 5.10773 5.19742 5.23378 5.33398 5.47087 5.48238 5.58383 5.59300 5.62469 5.73041 5.75322 5.75573 5.82752 5.87957 5.94965 6.09042 6.12253 6.36172 6.49622 6.50209 6.61268 6.74695 6.98539 7.01300 7.01809 7.40095 7.55451 8.06092 8.18281 8.47019 8.84497 8.94114 9.47716 11.00934 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003858 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.137510 B = 7256.583905 C = 8834.681422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.010 3.990 3 C -0.174 4.174 4 C 0.016 3.984 5 C 0.604 3.396 6 O -0.560 6.560 7 N -0.576 5.576 8 C 0.199 3.801 9 C -0.511 4.511 10 H 0.074 0.926 11 C 0.076 3.924 12 N -0.898 5.898 13 Si 0.869 3.131 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.121 3.879 18 C -0.130 4.130 19 C 0.058 3.942 20 N -0.549 5.549 21 C 0.025 3.975 22 C 0.022 3.978 23 N -0.189 5.189 24 N -0.351 5.351 25 C 0.495 3.505 26 F -0.181 7.181 27 F -0.175 7.175 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.031 0.969 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.025 0.975 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 6.084 10.231 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.391 3.609 6 O -0.439 6.439 7 N -0.304 5.304 8 C 0.078 3.922 9 C -0.550 4.550 10 H 0.092 0.908 11 C -0.125 4.125 12 N -0.537 5.537 13 Si 0.697 3.303 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.003 4.003 18 C -0.169 4.169 19 C -0.070 4.070 20 N -0.272 5.272 21 C -0.123 4.123 22 C -0.127 4.127 23 N -0.020 5.020 24 N -0.148 5.148 25 C 0.360 3.640 26 F -0.162 7.162 27 F -0.157 7.157 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.942 4.940 10.316 12.098 hybrid contribution -0.554 0.456 0.061 0.720 sum -4.496 5.396 10.376 12.530 Atomic orbital electron populations 1.20387 0.86852 1.04002 1.03159 1.21460 0.95432 0.86898 1.07194 1.21488 0.90569 0.99144 1.08970 1.22020 0.95059 0.89469 1.08280 1.16819 0.81910 0.85703 0.76498 1.90695 1.86864 1.13430 1.52877 1.47779 1.04667 1.09050 1.68932 1.20210 0.98147 0.74827 0.99001 1.21236 1.50090 0.92585 0.91057 0.90839 1.24754 0.94887 0.97784 0.95113 1.69900 1.50899 1.13507 1.19361 0.86999 0.78273 0.81261 0.83799 1.20682 1.21171 1.18787 1.21301 0.87072 0.96540 0.95371 1.21974 0.96688 1.00633 0.97645 1.22078 0.98561 0.98821 0.87539 1.61972 1.02426 1.45313 1.17536 1.22369 0.90721 0.97826 1.01422 1.22432 0.96212 0.94762 0.99252 1.74376 0.97179 1.15033 1.15443 1.46736 1.05251 1.06191 1.56610 1.21183 0.88168 0.82667 0.71939 1.93103 1.78245 1.93622 1.51243 1.93114 1.77883 1.93782 1.50894 0.90371 0.91183 0.89497 0.82029 0.95084 0.92590 0.92682 0.89964 0.90503 0.91732 0.90939 0.90506 0.94595 0.95824 0.91632 0.91335 0.90870 0.91774 0.95681 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.96 36.01 0.36 -0.60 16 2 C 0.01 0.16 6.79 -82.21 -0.56 -0.40 16 3 C -0.17 -3.02 10.73 -39.36 -0.42 -3.44 16 4 C 0.02 0.32 6.81 -82.76 -0.56 -0.24 16 5 C 0.60 13.11 7.62 -12.39 -0.09 13.01 16 6 O -0.56 -12.62 16.48 5.31 0.09 -12.53 16 7 N -0.58 -12.08 2.47 -176.23 -0.44 -12.52 16 8 C 0.20 4.52 3.83 -5.20 -0.02 4.50 16 9 C -0.51 -13.54 9.04 -34.44 -0.31 -13.85 16 10 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -26.05 13.96 55.43 0.77 -25.28 16 13 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 17 C 0.12 2.14 5.41 -4.04 -0.02 2.12 16 18 C -0.13 -1.98 5.46 -26.73 -0.15 -2.13 16 19 C 0.06 0.75 4.96 -3.83 -0.02 0.74 16 20 N -0.55 -6.78 5.02 -251.26 -1.26 -8.04 16 21 C 0.03 0.25 9.57 60.07 0.57 0.82 16 22 C 0.02 0.24 9.32 60.06 0.56 0.80 16 23 N -0.19 -3.94 7.84 33.42 0.26 -3.67 16 24 N -0.35 -6.22 3.56 -62.36 -0.22 -6.44 16 25 C 0.49 7.45 5.86 59.85 0.35 7.80 16 26 F -0.18 -2.44 17.30 2.25 0.04 -2.40 16 27 F -0.18 -2.63 16.41 2.25 0.04 -2.59 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.77 6.90 -51.93 -0.36 0.42 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.33 16 33 H 0.06 1.28 4.74 -51.93 -0.25 1.03 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 36 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 37 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 40 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 43 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.07 0.88 6.47 -51.93 -0.34 0.55 16 45 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 46 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.17 2.48 8.14 -51.93 -0.42 2.06 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -31.50 393.13 -6.98 -38.48 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.10 Total: 2.84 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -0.41 Total: 11.08 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.88 Total: -55.95 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.08 Total: -4.99 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.50 -6.98 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341790628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.100 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds