Wall clock time and date at job start Wed Apr 1 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35368 * 126.38594 * 2 1 4 4 C 1.41501 * 105.50277 * 179.89640 * 3 2 1 5 5 C 1.47709 * 126.51775 * 180.10028 * 4 3 2 6 6 O 1.21568 * 120.00239 * 354.03650 * 5 4 3 7 7 N 1.34784 * 119.99758 * 174.04108 * 5 4 3 8 8 C 1.46498 * 120.00290 * 4.39040 * 7 5 4 9 9 C 1.50695 * 109.47122 * 83.70624 * 8 7 5 10 10 H 1.07999 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00245 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00552 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99928 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47264 * 89.99680 * 13 11 9 15 15 H 1.48496 * 109.47486 * 210.00549 * 13 11 9 16 16 H 1.48500 * 109.46995 * 329.99976 * 13 11 9 17 17 C 1.46494 * 119.99757 * 184.38965 * 7 5 4 18 18 C 1.53002 * 109.47105 * 89.99852 * 17 7 5 19 19 C 1.53000 * 109.47474 * 179.97438 * 18 17 7 20 20 N 1.46894 * 109.47551 * 180.02562 * 19 18 17 21 21 C 1.46901 * 111.00207 * 170.00115 * 20 19 18 22 22 C 1.46900 * 110.99695 * 293.95536 * 20 19 18 23 23 N 1.31815 * 106.96125 * 0.36209 * 4 3 2 24 24 N 1.28468 * 110.07629 * 359.77446 * 23 4 3 25 25 C 1.46497 * 124.88674 * 180.02562 * 24 23 4 26 26 F 1.39899 * 109.47081 * 119.96983 * 25 24 23 27 27 F 1.39904 * 109.46958 * 239.97445 * 25 24 23 28 28 H 1.08994 * 109.47600 * 269.69355 * 1 2 3 29 29 H 1.09002 * 109.47097 * 149.68841 * 1 2 3 30 30 H 1.09007 * 109.46838 * 29.69634 * 1 2 3 31 31 H 1.07998 * 127.24770 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47471 * 203.71309 * 8 7 5 33 33 H 1.09003 * 109.47080 * 323.71035 * 8 7 5 34 34 H 0.96998 * 120.00073 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.47565 * 209.99596 * 17 7 5 36 36 H 1.09004 * 109.47455 * 330.00297 * 17 7 5 37 37 H 1.08997 * 109.47546 * 299.99945 * 18 17 7 38 38 H 1.09002 * 109.47329 * 60.00009 * 18 17 7 39 39 H 1.09006 * 109.46919 * 300.00277 * 19 18 17 40 40 H 1.09002 * 109.46707 * 59.99785 * 19 18 17 41 41 H 1.09002 * 109.46793 * 60.00001 * 21 20 19 42 42 H 1.08999 * 109.46802 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.46881 * 299.99832 * 21 20 19 44 44 H 1.08998 * 109.47294 * 60.00039 * 22 20 19 45 45 H 1.09002 * 109.47450 * 180.02562 * 22 20 19 46 46 H 1.09006 * 109.47178 * 299.99773 * 22 20 19 47 47 H 1.09000 * 109.46962 * 359.97049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 0.0025 5 6 4.8765 1.3812 0.0055 6 8 4.8247 2.5909 -0.1033 7 7 6.0694 0.7661 0.1288 8 6 6.1393 -0.6968 0.1631 9 6 6.1399 -1.2328 -1.2454 10 1 6.0934 -0.5518 -2.0823 11 6 6.1998 -2.5926 -1.4656 12 7 6.2009 -3.0604 -2.6947 13 14 6.2795 -3.7705 -0.0179 14 1 4.9023 -4.1481 0.3894 15 1 7.0309 -4.9892 -0.4121 16 1 6.9688 -3.1106 1.1198 17 6 7.2962 1.5605 0.2286 18 6 7.5889 1.8643 1.6993 19 6 8.8705 2.6934 1.8037 20 7 9.1518 2.9846 3.2157 21 6 10.4894 3.5705 3.3761 22 6 8.1211 3.8609 3.7879 23 7 3.5419 -0.7297 -0.0042 24 7 2.3080 -1.0871 -0.0058 25 6 1.8375 -2.4745 -0.0122 26 9 1.0639 -2.7099 1.1294 27 9 1.0626 -2.6988 -1.1552 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5091 31 1 2.0057 2.1260 0.0004 32 1 7.0537 -1.0052 0.6696 33 1 5.2761 -1.0893 0.7007 34 1 6.2427 -4.0170 -2.8495 35 1 8.1277 1.0002 -0.1991 36 1 7.1691 2.4954 -0.3172 37 1 6.7575 2.4245 2.1271 38 1 7.7160 0.9294 2.2452 39 1 9.7018 2.1327 1.3760 40 1 8.7438 3.6283 1.2577 41 1 10.5494 4.4994 2.8090 42 1 10.6715 3.7766 4.4308 43 1 11.2392 2.8705 3.0075 44 1 7.1493 3.3722 3.7188 45 1 8.3539 4.0610 4.8338 46 1 8.0954 4.8004 3.2357 47 1 2.6941 -3.1486 -0.0160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341790628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:23 Heat of formation + Delta-G solvation = -49.834102 kcal Electronic energy + Delta-G solvation = -31550.081557 eV Core-core repulsion = 27019.874419 eV Total energy + Delta-G solvation = -4530.207138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.55089 -48.60469 -43.72242 -40.64429 -38.63113 -36.96985 -34.73272 -34.16538 -33.72808 -32.83485 -29.81011 -28.49496 -28.26989 -28.14464 -26.70571 -24.85405 -24.27325 -23.02421 -22.13410 -21.75741 -19.94560 -19.23551 -19.13747 -18.98837 -18.57865 -17.66247 -17.25095 -16.81730 -16.55119 -16.26878 -16.01737 -15.96623 -15.45195 -15.44129 -15.24679 -14.98215 -14.93330 -14.82262 -14.68868 -14.28795 -14.18367 -13.93090 -13.82844 -13.52905 -13.46457 -13.27233 -12.96177 -12.92037 -12.91473 -12.60129 -12.45414 -12.41073 -12.21646 -11.99831 -11.73431 -11.55992 -11.43620 -11.10279 -10.70961 -10.57573 -9.98395 -9.47966 -9.32130 -8.21358 -6.23688 0.41349 0.71811 0.97845 1.32392 1.41690 1.50703 2.13415 2.31922 2.36482 2.38211 2.98782 3.04789 3.13770 3.43014 3.48582 3.51653 3.87386 3.96829 4.10261 4.21348 4.30325 4.39794 4.45628 4.51325 4.51454 4.61244 4.65859 4.66342 4.72827 4.79357 4.81522 4.86826 4.91317 4.97472 5.00152 5.02494 5.12300 5.23795 5.32560 5.53126 5.56013 5.73838 6.04764 6.11730 6.21749 6.49657 6.68730 6.79414 7.18542 7.38489 8.95881 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003858 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.137510 B = 7256.583905 C = 8834.681422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.026 3.974 3 C -0.187 4.187 4 C -0.012 4.012 5 C 0.597 3.403 6 O -0.577 6.577 7 N -0.581 5.581 8 C 0.212 3.788 9 C -0.507 4.507 10 H 0.019 0.981 11 C 0.027 3.973 12 N -0.948 5.948 13 Si 0.927 3.073 14 H -0.252 1.252 15 H -0.288 1.288 16 H -0.246 1.246 17 C 0.118 3.882 18 C -0.114 4.114 19 C 0.064 3.936 20 N -0.563 5.563 21 C 0.025 3.975 22 C 0.022 3.978 23 N -0.222 5.222 24 N -0.356 5.356 25 C 0.497 3.503 26 F -0.167 7.167 27 F -0.174 7.174 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.179 0.821 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.026 0.974 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 5.751 12.543 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.214 4.214 4 C -0.175 4.175 5 C 0.384 3.616 6 O -0.457 6.457 7 N -0.310 5.310 8 C 0.090 3.910 9 C -0.545 4.545 10 H 0.038 0.962 11 C -0.171 4.171 12 N -0.589 5.589 13 Si 0.750 3.250 14 H -0.177 1.177 15 H -0.214 1.214 16 H -0.170 1.170 17 C -0.005 4.005 18 C -0.153 4.153 19 C -0.064 4.064 20 N -0.287 5.287 21 C -0.123 4.123 22 C -0.126 4.126 23 N -0.054 5.054 24 N -0.154 5.154 25 C 0.363 3.637 26 F -0.149 7.149 27 F -0.156 7.156 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.196 0.804 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.800 4.626 12.649 14.298 hybrid contribution -0.347 0.624 -0.740 1.028 sum -5.146 5.250 11.909 13.995 Atomic orbital electron populations 1.20599 0.83274 1.05322 1.04987 1.22153 0.97343 0.85694 1.04314 1.21750 0.89418 1.00567 1.09708 1.22109 0.95778 0.89953 1.09685 1.17121 0.82566 0.85793 0.76134 1.90660 1.87252 1.14031 1.53772 1.47862 1.05625 1.08694 1.68793 1.19973 0.98694 0.75770 0.96558 1.21223 1.49842 0.92090 0.91379 0.96241 1.25535 0.94142 0.99468 0.97920 1.70063 1.52632 1.14035 1.22140 0.86040 0.79981 0.78513 0.80432 1.17694 1.21367 1.16982 1.21458 0.85968 0.95837 0.97256 1.21776 0.97651 1.00591 0.95258 1.21975 0.97448 0.98511 0.88498 1.61965 1.03754 1.46278 1.16697 1.22430 0.89373 0.98015 1.02495 1.22439 0.95445 0.94431 1.00283 1.74198 0.99056 1.15197 1.16965 1.46993 1.04832 1.07591 1.55977 1.21215 0.88505 0.81672 0.72271 1.93130 1.77894 1.93365 1.50498 1.93119 1.77824 1.93642 1.51001 0.88111 0.90759 0.87268 0.80375 0.94170 0.91838 0.92587 0.89817 0.91095 0.92690 0.91477 0.89701 0.94532 0.95353 0.90239 0.90842 0.92176 0.90045 0.95537 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.96 71.24 0.71 -0.90 16 2 C 0.03 0.77 6.79 41.40 0.28 1.05 16 3 C -0.19 -6.36 10.73 22.41 0.24 -6.12 16 4 C -0.01 -0.52 6.81 42.46 0.29 -0.23 16 5 C 0.60 26.57 7.62 86.75 0.66 27.23 16 6 O -0.58 -26.67 16.48 -3.93 -0.06 -26.74 16 7 N -0.58 -24.99 2.47 -829.74 -2.05 -27.04 16 8 C 0.21 9.67 3.83 85.63 0.33 10.00 16 9 C -0.51 -27.67 9.04 25.60 0.23 -27.44 16 10 H 0.02 1.24 8.06 -2.91 -0.02 1.22 16 11 C 0.03 1.47 5.47 84.65 0.46 1.93 16 12 N -0.95 -56.49 13.96 21.45 0.30 -56.19 16 13 Si 0.93 39.95 27.47 68.60 1.88 41.83 16 14 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 15 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.25 -9.89 6.54 99.48 0.65 -9.24 16 17 C 0.12 4.25 5.41 86.38 0.47 4.72 16 18 C -0.11 -3.45 5.46 30.60 0.17 -3.28 16 19 C 0.06 1.61 4.96 86.30 0.43 2.04 16 20 N -0.56 -13.07 5.02 -948.84 -4.76 -17.83 16 21 C 0.02 0.44 9.57 127.69 1.22 1.66 16 22 C 0.02 0.47 9.32 127.69 1.19 1.66 16 23 N -0.22 -9.21 7.84 -48.17 -0.38 -9.59 16 24 N -0.36 -12.20 3.56 -351.20 -1.25 -13.46 16 25 C 0.50 14.05 5.86 127.77 0.75 14.80 16 26 F -0.17 -4.07 17.30 44.97 0.78 -3.30 16 27 F -0.17 -4.92 16.41 44.97 0.74 -4.19 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.40 6.90 -2.39 -0.02 1.39 16 30 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.18 5.23 8.06 -2.91 -0.02 5.21 16 32 H 0.04 1.76 7.08 -2.39 -0.02 1.74 16 33 H 0.06 2.87 4.74 -2.39 -0.01 2.86 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 36 H 0.07 2.63 7.36 -2.38 -0.02 2.61 16 37 H 0.05 1.77 6.55 -2.39 -0.02 1.76 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.08 1.98 8.06 -2.38 -0.02 1.96 16 40 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 41 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 43 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 44 H 0.06 1.42 6.47 -2.39 -0.02 1.41 16 45 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 46 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.17 4.77 8.14 -2.39 -0.02 4.75 16 Total: -1.00 -70.15 393.13 3.54 -66.61 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.92 Total: 22.78 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 7.43 Total: 27.11 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -8.14 Total: -124.11 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.52 Total: -7.48 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Total: -70.15 3.54 -66.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341790628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.775 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds