Wall clock time and date at job start Wed Apr 1 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46837 * 269.99362 * 3 2 1 5 5 H 1.48496 * 109.47195 * 29.99746 * 3 2 1 6 6 H 1.48502 * 109.46729 * 150.00075 * 3 2 1 7 7 C 1.37878 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47301 * 179.97438 * 9 7 2 11 11 C 1.36457 * 125.85189 * 274.99410 * 10 9 7 12 12 C 1.34956 * 108.95008 * 179.75765 * 11 10 9 13 13 C 1.41216 * 108.24234 * 0.38408 * 12 11 10 14 14 N 1.32928 * 126.37668 * 179.87973 * 13 12 11 15 15 C 1.33838 * 120.00323 * 359.69127 * 14 13 12 16 16 O 1.21838 * 119.99808 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00179 * 179.97438 * 15 14 13 18 18 C 1.46919 * 120.63154 * 179.97438 * 17 15 14 19 19 C 1.53193 * 108.77692 * 233.58888 * 18 17 15 20 20 C 1.53039 * 109.31281 * 305.36331 * 19 18 17 21 21 C 1.50698 * 109.46147 * 181.38462 * 20 19 18 22 22 C 1.39874 * 126.04031 * 299.97461 * 21 20 19 23 23 N 1.30836 * 108.20052 * 179.73886 * 22 21 20 24 24 N 1.40084 * 108.20904 * 0.40640 * 23 22 21 25 25 H 0.97001 * 126.04219 * 179.85882 * 24 23 22 26 26 C 1.34947 * 107.92164 * 359.58781 * 24 23 22 27 27 C 1.53038 * 109.52522 * 61.37278 * 20 19 18 28 28 C 1.46927 * 120.63045 * 359.97438 * 17 15 14 29 29 N 1.37424 * 107.24079 * 359.62210 * 13 12 11 30 30 H 0.97000 * 126.35961 * 180.23044 * 29 13 12 31 31 H 0.97001 * 119.99952 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47456 * 59.99146 * 9 7 2 33 33 H 1.09006 * 109.46550 * 299.99326 * 9 7 2 34 34 H 1.07998 * 125.52620 * 0.02562 * 11 10 9 35 35 H 1.07995 * 125.88297 * 180.26490 * 12 11 10 36 36 H 1.09004 * 109.58854 * 113.80198 * 18 17 15 37 37 H 1.09003 * 109.70786 * 353.44375 * 18 17 15 38 38 H 1.09002 * 109.49663 * 185.41340 * 19 18 17 39 39 H 1.09000 * 109.52528 * 65.33307 * 19 18 17 40 40 H 1.09004 * 109.45929 * 301.35757 * 20 19 18 41 41 H 1.08001 * 125.89534 * 0.02562 * 22 21 20 42 42 H 1.08007 * 126.12498 * 180.26712 * 26 24 23 43 43 H 1.09003 * 109.49659 * 58.58030 * 27 20 19 44 44 H 1.09005 * 109.49949 * 178.67885 * 27 20 19 45 45 H 1.08998 * 109.58480 * 246.19866 * 28 17 15 46 46 H 1.09005 * 109.58655 * 6.47982 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7955 -4.1576 -1.1013 12 6 3.6127 -5.1577 -0.7100 13 6 3.5367 -5.2662 0.6960 14 7 4.1940 -6.1363 1.4562 15 6 5.0197 -7.0266 0.8936 16 8 5.1687 -7.0400 -0.3156 17 7 5.6865 -7.9084 1.6645 18 6 6.5960 -8.8921 1.0614 19 6 6.1968 -10.2914 1.5404 20 6 6.1712 -10.3144 3.0704 21 6 5.8119 -11.6986 3.5458 22 6 4.6289 -12.3867 3.2570 23 7 4.6841 -13.5569 3.8396 24 7 5.9018 -13.6469 4.5263 25 1 6.2077 -14.4048 5.0488 26 6 6.5768 -12.4954 4.3274 27 6 5.1306 -9.3144 3.5797 28 6 5.5176 -7.9042 3.1240 29 7 2.6612 -4.3009 1.1322 30 1 2.4077 -4.1281 2.0524 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8895 33 1 0.6241 -2.5567 0.8904 34 1 2.6394 -3.8373 -2.1208 35 1 4.2189 -5.7710 -1.3602 36 1 7.6200 -8.6792 1.3682 37 1 6.5224 -8.8431 -0.0251 38 1 6.9213 -11.0205 1.1777 39 1 5.2074 -10.5395 1.1562 40 1 7.1545 -10.0424 3.4542 41 1 3.8130 -12.0177 2.6531 42 1 7.5529 -12.2534 4.7214 43 1 4.1512 -9.5712 3.1761 44 1 5.0962 -9.3480 4.6686 45 1 6.4536 -7.6106 3.5992 46 1 4.7318 -7.2007 3.3989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360043980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:54 Heat of formation + Delta-G solvation = 147.727515 kcal Electronic energy + Delta-G solvation = -28867.151554 eV Core-core repulsion = 24796.200517 eV Total energy + Delta-G solvation = -4070.951037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47977 -40.73091 -39.34819 -37.23276 -34.26321 -33.38952 -32.95763 -31.50322 -31.17569 -30.90479 -30.34847 -29.39009 -26.71464 -24.89669 -23.32451 -22.94424 -22.32990 -21.75569 -21.21469 -20.64513 -20.00322 -18.85013 -17.77513 -17.10562 -16.77811 -16.09631 -15.76063 -15.01491 -14.90910 -14.84484 -14.76881 -14.39874 -14.29866 -14.18035 -14.00514 -13.65754 -13.41597 -13.12579 -13.04214 -12.66858 -12.59039 -12.29487 -12.14070 -11.92775 -11.59495 -11.32299 -11.12856 -11.04614 -10.69365 -10.64867 -10.52118 -10.43185 -10.36249 -9.87924 -9.62167 -9.53678 -8.98089 -8.90122 -8.68353 -8.23232 -8.15203 -6.83501 -6.45543 -4.63301 1.65363 1.83930 2.13646 2.57025 2.66001 3.06984 3.14867 3.18041 3.21843 3.52964 4.08015 4.42833 4.46992 4.64175 4.70416 4.78969 4.83521 5.01105 5.12780 5.26459 5.31691 5.33522 5.37011 5.45292 5.53215 5.67225 5.74392 5.95052 5.96466 5.97287 6.01062 6.08747 6.14754 6.17533 6.31821 6.42707 6.47413 6.57171 6.59711 6.80224 6.99909 7.21612 7.35572 7.41049 7.42136 7.54123 7.68519 7.88883 8.29151 8.46364 8.53674 9.07206 9.66134 10.54601 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.001803 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.259810 B =15521.982405 C =15705.057265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.255 3.745 10 N -0.347 5.347 11 C 0.161 3.839 12 C -0.333 4.333 13 C 0.486 3.514 14 N -0.710 5.710 15 C 0.689 3.311 16 O -0.633 6.633 17 N -0.611 5.611 18 C 0.128 3.872 19 C -0.122 4.122 20 C -0.008 4.008 21 C -0.222 4.222 22 C 0.060 3.940 23 N -0.299 5.299 24 N -0.482 5.482 25 H 0.437 0.563 26 C 0.054 3.946 27 C -0.123 4.123 28 C 0.124 3.876 29 N -0.472 5.472 30 H 0.444 0.556 31 H 0.271 0.729 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.181 0.819 42 H 0.174 0.826 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 -19.189 7.222 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.133 5.133 11 C 0.016 3.984 12 C -0.366 4.366 13 C 0.233 3.767 14 N -0.474 5.474 15 C 0.390 3.610 16 O -0.515 6.515 17 N -0.346 5.346 18 C 0.004 3.996 19 C -0.160 4.160 20 C -0.028 4.028 21 C -0.233 4.233 22 C -0.127 4.127 23 N -0.121 5.121 24 N -0.190 5.190 25 H 0.280 0.720 26 C -0.093 4.093 27 C -0.162 4.162 28 C 0.001 3.999 29 N -0.195 5.195 30 H 0.290 0.710 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.203 0.797 35 H 0.199 0.801 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.198 0.802 42 H 0.191 0.809 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.292 -19.959 7.742 23.338 hybrid contribution 0.964 1.396 0.081 1.699 sum 10.256 -18.563 7.824 22.605 Atomic orbital electron populations 1.69898 1.06128 1.28240 1.48104 1.24955 0.95004 0.99716 0.93862 0.86298 0.79713 0.81770 0.78647 1.20053 1.20774 1.19563 1.21429 0.94092 0.89587 1.54428 0.91227 1.20016 0.85631 0.79838 1.00608 1.47949 1.39969 1.29065 0.96297 1.22790 0.91393 0.92158 0.92072 1.22388 1.11703 1.07316 0.95222 1.18736 0.83855 0.84513 0.89617 1.68023 1.25754 1.16901 1.36747 1.16542 0.80048 0.80975 0.83470 1.90713 1.70278 1.75445 1.15074 1.46779 1.46662 1.34875 1.06333 1.21333 0.91882 0.86607 0.99809 1.21958 1.02366 0.96902 0.94823 1.19458 0.99019 0.89207 0.95100 1.20181 0.96366 0.99357 1.07399 1.23806 0.98585 0.91292 0.98974 1.77337 1.00931 1.20745 1.13122 1.46281 1.14815 1.15433 1.42499 0.71957 1.22399 0.98922 0.87578 1.00411 1.21970 0.99038 0.94830 1.00349 1.21462 1.01587 0.96566 0.80329 1.44425 1.42069 1.29496 1.03491 0.70957 0.91883 0.91488 0.93141 0.79740 0.80055 0.92704 0.89180 0.91341 0.91564 0.90810 0.80247 0.80877 0.91601 0.91424 0.93167 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.53 13.29 55.43 0.74 -21.79 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.56 -13.26 9.39 -34.44 -0.32 -13.58 16 8 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.26 5.33 6.19 -5.20 -0.03 5.29 16 10 N -0.35 -6.44 3.63 -62.25 -0.23 -6.67 16 11 C 0.16 2.73 11.45 -16.66 -0.19 2.54 16 12 C -0.33 -6.27 9.52 -39.62 -0.38 -6.64 16 13 C 0.49 9.40 8.07 -155.29 -1.25 8.15 16 14 N -0.71 -13.80 9.05 -15.79 -0.14 -13.94 16 15 C 0.69 13.46 8.22 -87.76 -0.72 12.74 16 16 O -0.63 -13.75 12.68 5.07 0.06 -13.68 16 17 N -0.61 -9.39 2.97 -178.75 -0.53 -9.92 16 18 C 0.13 1.62 6.43 -3.71 -0.02 1.60 16 19 C -0.12 -1.24 5.24 -26.61 -0.14 -1.38 16 20 C -0.01 -0.07 2.51 -91.73 -0.23 -0.30 16 21 C -0.22 -1.97 4.80 -105.05 -0.50 -2.47 16 22 C 0.06 0.61 11.51 -17.36 -0.20 0.41 16 23 N -0.30 -3.21 12.70 30.63 0.39 -2.82 16 24 N -0.48 -3.63 7.36 30.45 0.22 -3.40 16 25 H 0.44 1.87 8.96 -182.61 -1.64 0.23 16 26 C 0.05 0.38 11.88 -17.22 -0.20 0.17 16 27 C -0.12 -1.26 5.24 -26.63 -0.14 -1.40 16 28 C 0.12 1.56 6.43 -3.73 -0.02 1.54 16 29 N -0.47 -8.40 7.38 31.33 0.23 -8.16 16 30 H 0.44 6.94 8.96 -182.55 -1.64 5.31 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.18 3.61 5.77 -52.49 -0.30 3.31 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 40 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 41 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.17 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.43 6.85 -51.93 -0.36 1.07 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -31.45 383.17 -11.87 -43.31 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.90 Total: 8.77 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -4.46 Total: 8.28 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: 0.68 Total: -66.72 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.06 Total: -13.68 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.45 -11.87 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360043980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.040 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds