Wall clock time and date at job start Wed Apr 1 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35243 * 126.07240 * 2 1 4 4 C 1.40404 * 107.86722 * 180.02562 * 3 2 1 5 5 N 1.40198 * 125.96892 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00381 * 359.97438 * 5 4 3 7 7 O 1.21601 * 119.99694 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00299 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00115 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.43033 * 35.10624 * 9 8 6 11 11 C 1.53032 * 109.42862 * 154.99915 * 9 8 6 12 12 C 1.53372 * 109.75012 * 191.78462 * 11 9 8 13 13 C 1.50948 * 108.23710 * 309.30177 * 12 11 9 14 14 N 1.30129 * 128.28303 * 196.80610 * 13 12 11 15 15 N 1.40319 * 108.12192 * 179.85113 * 14 13 12 16 16 H 0.96993 * 126.00254 * 180.02562 * 15 14 13 17 17 C 1.35458 * 107.96853 * 0.07430 * 15 14 13 18 18 C 1.34570 * 107.59904 * 359.97438 * 17 15 14 19 19 C 1.50880 * 128.32589 * 179.97438 * 18 17 15 20 20 N 1.31203 * 108.05426 * 0.25875 * 4 3 2 21 21 N 1.34963 * 126.06794 * 180.02562 * 2 1 3 22 22 C 1.46500 * 125.97801 * 0.02562 * 21 2 1 23 23 C 1.50699 * 109.47083 * 90.00109 * 22 21 2 24 24 H 1.08002 * 119.99741 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.31511 * 120.00061 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99576 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47580 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47148 * 120.00445 * 27 25 23 30 30 H 1.48506 * 109.46945 * 239.99721 * 27 25 23 31 31 H 1.08997 * 109.47323 * 89.97457 * 1 2 3 32 32 H 1.09001 * 109.47112 * 209.97792 * 1 2 3 33 33 H 1.09000 * 109.47158 * 329.96929 * 1 2 3 34 34 H 1.07999 * 126.06447 * 0.02562 * 3 2 1 35 35 H 0.97004 * 119.99790 * 179.97438 * 5 4 3 36 36 H 0.97004 * 119.99872 * 359.97438 * 8 6 5 37 37 H 1.08992 * 109.42245 * 71.69731 * 11 9 8 38 38 H 1.08997 * 109.37503 * 311.83562 * 11 9 8 39 39 H 1.09002 * 109.71916 * 69.00243 * 12 11 9 40 40 H 1.09001 * 109.71493 * 189.60357 * 12 11 9 41 41 H 1.07996 * 126.20769 * 180.02562 * 17 15 14 42 42 H 1.08996 * 109.72315 * 76.99017 * 19 18 17 43 43 H 1.09009 * 109.71855 * 316.34032 * 19 18 17 44 44 H 1.09011 * 109.46881 * 209.99890 * 22 21 2 45 45 H 1.08992 * 109.47388 * 329.99853 * 22 21 2 46 46 H 0.97003 * 119.99816 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0006 5 7 4.7738 1.4751 -0.0003 6 6 4.6371 2.8159 0.0001 7 8 3.5277 3.3139 -0.0002 8 7 5.7298 3.6047 -0.0001 9 6 5.5812 5.0621 -0.0002 10 1 4.7079 5.3376 0.5911 11 6 6.8308 5.7013 0.6095 12 6 6.5710 7.1876 0.8845 13 6 6.0148 7.8105 -0.3729 14 7 5.9361 9.0724 -0.6808 15 7 5.3504 9.1759 -1.9517 16 1 5.1700 9.9996 -2.4310 17 6 5.0804 7.9232 -2.3906 18 6 5.4798 7.0627 -1.4362 19 6 5.3981 5.5561 -1.4410 20 7 3.6336 -0.6575 -0.0066 21 7 2.3016 -1.0909 -0.0005 22 6 1.8500 -2.4846 -0.0016 23 6 1.6957 -2.9614 -1.4228 24 1 1.9127 -2.2933 -2.2432 25 6 1.2784 -4.2510 -1.6758 26 7 1.0156 -5.0650 -0.6769 27 14 1.0879 -4.8423 -3.4375 28 1 1.4435 -3.7426 -4.3700 29 1 1.9875 -6.0005 -3.6710 30 1 -0.3197 -5.2537 -3.6720 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5143 34 1 1.9720 2.1211 0.0004 35 1 5.6587 1.0778 -0.0004 36 1 6.6148 3.2074 -0.0002 37 1 7.6646 5.6015 -0.0852 38 1 7.0754 5.1971 1.5444 39 1 5.8506 7.2911 1.6960 40 1 7.5047 7.6799 1.1568 41 1 4.6276 7.6621 -3.3357 42 1 6.1860 5.1470 -2.0733 43 1 4.4241 5.2418 -1.8164 44 1 2.5845 -3.1050 0.5121 45 1 0.8912 -2.5563 0.5118 46 1 0.7217 -5.9721 -0.8549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371523180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:17 Heat of formation + Delta-G solvation = 93.482312 kcal Electronic energy + Delta-G solvation = -28902.616853 eV Core-core repulsion = 24829.313567 eV Total energy + Delta-G solvation = -4073.303286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.41372 -42.20915 -40.91728 -38.05033 -36.19411 -35.29260 -34.60261 -33.07827 -32.66642 -32.42786 -31.15521 -29.01962 -28.29439 -27.81407 -25.55907 -24.88988 -23.33855 -22.17349 -21.92372 -21.30290 -21.05423 -19.94523 -18.87104 -18.69027 -18.51842 -17.76449 -17.21964 -16.64006 -16.49638 -16.15323 -16.02709 -15.72223 -15.60186 -15.16919 -14.67858 -14.55024 -14.34345 -14.25050 -13.94104 -13.76132 -13.66917 -13.63589 -13.47530 -13.12298 -12.95309 -12.92431 -12.79272 -12.65755 -12.24234 -12.07143 -12.00176 -11.79337 -11.52859 -11.36560 -11.30025 -11.04131 -10.71630 -10.32357 -10.14414 -9.51558 -9.34803 -9.02558 -8.30262 -6.47931 0.97735 1.07297 1.17562 1.38186 1.39929 1.52769 1.72793 1.78478 2.01905 2.13012 2.37111 2.46447 2.98836 3.16620 3.55553 3.86864 3.88519 3.93584 4.13238 4.21750 4.30628 4.45349 4.48300 4.52558 4.64001 4.74998 4.75691 4.81343 4.83343 4.92947 4.97465 5.03703 5.05874 5.08662 5.16899 5.20086 5.25817 5.29960 5.32943 5.56476 5.58490 5.75340 5.83989 5.95967 6.03927 6.31022 6.48182 6.64821 6.74574 6.83314 7.20509 7.22947 7.52481 8.75340 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.001920 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.681651 B =14580.285340 C =14894.587403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.085 3.915 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.600 6.600 8 N -0.715 5.715 9 C 0.169 3.831 10 H 0.070 0.930 11 C -0.112 4.112 12 C -0.034 4.034 13 C 0.070 3.930 14 N -0.324 5.324 15 N -0.482 5.482 16 H 0.451 0.549 17 C 0.069 3.931 18 C -0.252 4.252 19 C -0.045 4.045 20 N -0.361 5.361 21 N -0.344 5.344 22 C 0.275 3.725 23 C -0.550 4.550 24 H 0.049 0.951 25 C 0.021 3.979 26 N -0.918 5.918 27 Si 0.972 3.028 28 H -0.274 1.274 29 H -0.274 1.274 30 H -0.268 1.268 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.421 0.579 36 H 0.416 0.584 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.205 0.795 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.052 0.948 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 25.712 -0.485 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C -0.328 4.328 4 C 0.039 3.961 5 N -0.288 5.288 6 C 0.411 3.589 7 O -0.477 6.477 8 N -0.371 5.371 9 C 0.064 3.936 10 H 0.088 0.912 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.098 4.098 14 N -0.146 5.146 15 N -0.192 5.192 16 H 0.297 0.703 17 C -0.077 4.077 18 C -0.264 4.264 19 C -0.085 4.085 20 N -0.191 5.191 21 N -0.127 5.127 22 C 0.156 3.844 23 C -0.588 4.588 24 H 0.067 0.933 25 C -0.179 4.179 26 N -0.557 5.557 27 Si 0.796 3.204 28 H -0.198 1.198 29 H -0.200 1.200 30 H -0.193 1.193 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.183 0.817 35 H 0.259 0.741 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.222 0.778 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.455 26.041 -0.053 28.449 hybrid contribution -0.168 -0.746 -1.431 1.623 sum 11.288 25.295 -1.485 27.739 Atomic orbital electron populations 1.20454 0.85519 1.04116 1.03860 1.21724 0.96589 0.86538 0.99654 1.21397 0.90031 0.99787 1.21585 1.18944 0.88125 0.88859 1.00186 1.41401 1.06983 1.03852 1.76537 1.15819 0.85450 0.79995 0.77596 1.90850 1.25348 1.73849 1.57688 1.44924 1.07169 1.06111 1.78905 1.20874 0.99914 0.76593 0.96185 0.91198 1.21780 0.96338 0.93937 1.02936 1.20159 1.02065 0.93918 0.91240 1.22807 0.98534 0.90322 0.98173 1.76919 1.20418 1.19795 0.97512 1.46433 1.50172 1.08277 1.14294 0.70287 1.22631 0.99744 0.84453 1.00876 1.20175 1.12717 0.96726 0.96786 1.20288 1.01921 0.89155 0.97095 1.77164 0.99966 1.09807 1.32185 1.48740 1.01722 1.07398 1.54811 1.19234 0.94904 0.72522 0.97733 1.21467 1.47265 0.98290 0.91807 0.93281 1.25736 0.94044 0.95972 1.02195 1.70010 1.45251 1.07493 1.32913 0.85304 0.78424 0.78072 0.78636 1.19841 1.19986 1.19276 0.89893 0.91327 0.87698 0.81688 0.74108 0.74687 0.89313 0.88206 0.89251 0.87966 0.77845 0.89943 0.92545 0.95745 0.93063 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 10.11 71.24 0.72 -2.04 16 2 C 0.09 3.64 6.92 41.39 0.29 3.92 16 3 C -0.30 -12.29 9.52 22.11 0.21 -12.08 16 4 C 0.29 11.93 8.11 133.31 1.08 13.02 16 5 N -0.64 -18.75 5.45 -321.23 -1.75 -20.50 16 6 C 0.71 19.42 8.50 179.06 1.52 20.94 16 7 O -0.60 -21.04 13.13 -4.03 -0.05 -21.09 16 8 N -0.72 -11.84 5.08 -457.10 -2.32 -14.16 16 9 C 0.17 2.69 2.40 45.14 0.11 2.80 16 10 H 0.07 1.50 7.54 -2.39 -0.02 1.48 16 11 C -0.11 -1.04 5.33 30.73 0.16 -0.87 16 12 C -0.03 -0.40 6.31 30.05 0.19 -0.21 16 13 C 0.07 1.24 7.10 43.46 0.31 1.55 16 14 N -0.32 -6.37 12.68 -47.08 -0.60 -6.97 16 15 N -0.48 -6.79 7.38 -57.73 -0.43 -7.22 16 16 H 0.45 3.41 8.96 -213.19 -1.91 1.50 16 17 C 0.07 0.95 11.96 83.29 1.00 1.94 16 18 C -0.25 -4.29 5.89 -20.08 -0.12 -4.41 16 19 C -0.04 -0.76 5.85 30.04 0.18 -0.58 16 20 N -0.36 -16.93 12.59 -54.43 -0.69 -17.61 16 21 N -0.34 -16.78 3.59 -338.45 -1.22 -17.99 16 22 C 0.28 14.62 5.99 85.63 0.51 15.13 16 23 C -0.55 -30.95 9.39 25.60 0.24 -30.71 16 24 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 25 C 0.02 1.17 5.46 84.66 0.46 1.63 16 26 N -0.92 -51.91 13.29 21.45 0.28 -51.63 16 27 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 2.37 7.07 -2.39 -0.02 2.35 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.17 6.67 5.91 -2.91 -0.02 6.66 16 35 H 0.42 9.50 8.84 -92.71 -0.82 8.68 16 36 H 0.42 3.93 8.62 -92.71 -0.80 3.13 16 37 H 0.09 0.63 8.10 -2.39 -0.02 0.61 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.02 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.05 2.70 7.04 -2.39 -0.02 2.68 16 46 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -78.08 384.28 -0.35 -78.43 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -2.47 Total: 23.55 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.86 Total: 10.03 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -6.72 Total: -136.08 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.08 -0.35 -78.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371523180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.909 kcal (2) G-P(sol) polarization free energy of solvation -78.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds