Wall clock time and date at job start Wed Apr 1 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40170 * 119.82354 * 2 1 4 4 C 1.35685 * 119.27173 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.48533 * 179.97438 * 4 3 2 6 6 N 1.36175 * 119.02576 * 359.97438 * 4 3 2 7 7 N 1.40104 * 133.21965 * 179.97438 * 6 4 3 8 8 C 1.31992 * 106.92158 * 180.02562 * 7 6 4 9 9 C 1.48130 * 125.32014 * 180.02562 * 8 7 6 10 10 O 1.21512 * 120.00306 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99558 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99981 * 179.97438 * 11 9 8 13 13 C 1.53081 * 109.45080 * 84.78441 * 12 11 9 14 14 C 1.53190 * 109.29209 * 181.24433 * 13 12 11 15 15 N 1.46921 * 108.89311 * 305.57883 * 14 13 12 16 16 C 1.36940 * 120.63187 * 233.51481 * 15 14 13 17 17 H 1.08001 * 120.00319 * 152.61971 * 16 15 14 18 18 C 1.38813 * 119.99903 * 332.62203 * 16 15 14 19 19 N 1.31624 * 120.00070 * 159.34992 * 18 16 15 20 20 Si 1.86800 * 120.00077 * 339.35529 * 18 16 15 21 21 H 1.48494 * 109.47321 * 92.87851 * 20 18 16 22 22 H 1.48501 * 109.47194 * 212.88430 * 20 18 16 23 23 H 1.48509 * 109.46983 * 332.87654 * 20 18 16 24 24 C 1.46923 * 118.74178 * 53.54201 * 15 14 13 25 25 C 1.53035 * 109.46006 * 204.99622 * 12 11 9 26 26 N 1.33472 * 109.35239 * 0.26550 * 8 7 6 27 27 C 1.32499 * 109.75374 * 359.55851 * 26 8 7 28 28 N 1.31263 * 119.81818 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47252 * 89.99779 * 1 2 3 30 30 H 1.09004 * 109.47267 * 209.99978 * 1 2 3 31 31 H 1.09006 * 109.46645 * 329.99667 * 1 2 3 32 32 H 1.07996 * 120.36435 * 0.05049 * 3 2 1 33 33 H 1.09008 * 109.47018 * 270.01873 * 5 4 3 34 34 H 1.08994 * 109.47573 * 30.02065 * 5 4 3 35 35 H 1.09001 * 109.47075 * 150.02797 * 5 4 3 36 36 H 0.96997 * 119.99900 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.45705 * 324.97360 * 12 11 9 38 38 H 1.08992 * 109.38800 * 61.36852 * 13 12 11 39 39 H 1.09002 * 109.61927 * 301.26130 * 13 12 11 40 40 H 1.08999 * 109.58729 * 185.71870 * 14 13 12 41 41 H 1.09004 * 109.58886 * 65.43758 * 14 13 12 42 42 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.59094 * 66.17180 * 24 15 14 44 44 H 1.09001 * 109.59077 * 186.46452 * 24 15 14 45 45 H 1.09002 * 109.49848 * 58.66419 * 25 12 11 46 46 H 1.08999 * 109.49849 * 298.56228 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5608 1.2030 -0.0005 5 6 4.3378 2.4942 -0.0011 6 7 4.2100 0.0060 -0.0005 7 7 5.5649 -0.3506 -0.0014 8 6 5.6151 -1.6696 -0.0014 9 6 6.8553 -2.4795 -0.0017 10 8 7.9394 -1.9306 -0.0024 11 7 6.7813 -3.8253 -0.0023 12 6 8.0079 -4.6264 -0.0031 13 6 8.5070 -4.7958 1.4341 14 6 9.8063 -5.6074 1.4262 15 7 9.5739 -6.8704 0.7123 16 6 9.8762 -8.0698 1.2999 17 1 9.3371 -8.9615 1.0157 18 6 10.8755 -8.1396 2.2608 19 7 10.9064 -9.1481 3.1061 20 14 12.1764 -6.8023 2.3545 21 1 11.7470 -5.7610 3.3221 22 1 13.4629 -7.3936 2.8020 23 1 12.3534 -6.1891 1.0135 24 6 9.0117 -6.8220 -0.6442 25 6 7.7194 -5.9998 -0.6133 26 7 4.3735 -2.1594 -0.0064 27 6 3.4993 -1.1637 -0.0001 28 7 2.1596 -1.1388 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6671 2.1531 0.0008 33 1 4.5245 2.8055 -1.0290 34 1 3.7630 3.2644 0.5130 35 1 5.2881 2.3466 0.5119 36 1 5.9159 -4.2634 -0.0021 37 1 8.7718 -4.1200 -0.5931 38 1 7.7530 -5.3219 2.0193 39 1 8.6925 -3.8164 1.8750 40 1 10.1118 -5.8179 2.4511 41 1 10.5882 -5.0406 0.9209 42 1 11.6045 -9.1967 3.7778 43 1 9.7270 -6.3530 -1.3198 44 1 8.7952 -7.8340 -0.9864 45 1 7.3431 -5.8751 -1.6287 46 1 6.9737 -6.5169 -0.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609329174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:06 Heat of formation + Delta-G solvation = 100.381602 kcal Electronic energy + Delta-G solvation = -29350.542812 eV Core-core repulsion = 25277.538702 eV Total energy + Delta-G solvation = -4073.004110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.21363 -41.34394 -40.11520 -39.14302 -36.59492 -36.25522 -34.20589 -33.57509 -32.71520 -32.01820 -31.83726 -30.22502 -28.83289 -27.47436 -25.91433 -24.47740 -24.28440 -23.53479 -22.74428 -21.66341 -21.21207 -19.71827 -19.34820 -18.88397 -18.28766 -18.11101 -17.61510 -16.84387 -16.31209 -16.05881 -15.95156 -15.46465 -15.38810 -15.27157 -15.05385 -14.76849 -14.61175 -14.52124 -14.22938 -14.14523 -13.91779 -13.86775 -13.47424 -13.44679 -13.06139 -12.91126 -12.77208 -12.67141 -12.60764 -12.25528 -12.11472 -11.80805 -11.76338 -11.69177 -11.51227 -11.40396 -11.15095 -10.82678 -10.76704 -10.26965 -9.99709 -8.97996 -8.17159 -5.48706 -0.82033 -0.60667 0.48012 0.49306 1.29519 1.39740 1.48437 1.53033 1.82573 2.03024 2.19778 2.40671 2.78156 3.03102 3.08657 3.13842 3.33639 3.67612 3.74155 3.85959 3.97904 4.15536 4.16943 4.25913 4.27341 4.42042 4.42657 4.50221 4.57349 4.63953 4.64923 4.77839 4.79365 4.80537 4.86740 4.89297 4.96399 5.05854 5.06421 5.12113 5.16531 5.24469 5.32682 5.40598 5.86426 6.05111 6.13086 6.26237 6.53038 6.80040 6.89665 7.60685 8.01833 9.02347 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.002155 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.356943 B =12987.986826 C =13530.576910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.175 3.825 5 C -0.120 4.120 6 N -0.333 5.333 7 N -0.294 5.294 8 C 0.228 3.772 9 C 0.611 3.389 10 O -0.541 6.541 11 N -0.680 5.680 12 C 0.159 3.841 13 C -0.133 4.133 14 C 0.126 3.874 15 N -0.619 5.619 16 C -0.243 4.243 17 H 0.061 0.939 18 C -0.034 4.034 19 N -0.954 5.954 20 Si 0.938 3.062 21 H -0.281 1.281 22 H -0.309 1.309 23 H -0.262 1.262 24 C 0.146 3.854 25 C -0.127 4.127 26 N -0.528 5.528 27 C 0.436 3.564 28 N -0.494 5.494 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.420 0.580 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.845 29.619 -9.635 41.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.213 4.213 4 C 0.060 3.940 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.130 5.130 8 C -0.056 4.056 9 C 0.391 3.609 10 O -0.415 6.415 11 N -0.332 5.332 12 C 0.055 3.945 13 C -0.174 4.174 14 C 0.001 3.999 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.079 0.921 18 C -0.228 4.228 19 N -0.600 5.600 20 Si 0.768 3.232 21 H -0.208 1.208 22 H -0.238 1.238 23 H -0.186 1.186 24 C 0.020 3.980 25 C -0.166 4.166 26 N -0.265 5.265 27 C 0.076 3.924 28 N -0.214 5.214 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.252 0.748 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.564 29.006 -9.555 39.827 hybrid contribution 1.137 0.363 0.608 1.339 sum -24.427 29.369 -8.947 39.234 Atomic orbital electron populations 1.21163 0.82579 1.06598 1.06105 1.23078 1.00175 0.86325 0.82814 1.22407 0.89930 1.03084 1.05846 1.21902 0.93507 0.86077 0.92507 1.21234 1.00359 0.89997 1.06030 1.49091 1.06207 1.09407 1.46835 1.78701 0.91294 1.13032 1.29938 1.23955 0.93046 0.89932 0.98668 1.16468 0.84451 0.82566 0.77368 1.90825 1.28031 1.72190 1.50487 1.45836 1.11621 1.03958 1.71743 1.20977 0.85421 0.91715 0.96349 1.22277 0.98516 0.99406 0.97166 1.21284 0.95536 0.86892 0.96225 1.44538 1.74704 1.01312 1.13818 1.18897 1.13061 0.87490 1.17846 0.92140 1.25852 1.00152 0.98827 0.98016 1.69954 1.35574 1.34957 1.19561 0.86036 0.79337 0.79281 0.78549 1.20823 1.23764 1.18622 1.21100 0.92805 0.99393 0.84657 1.22194 0.99420 0.92976 1.02014 1.70692 0.97636 1.28428 1.29709 1.22832 0.91041 0.81820 0.96754 1.68038 1.00200 1.31498 1.21630 0.86716 0.89948 0.85146 0.74818 0.87297 0.84021 0.91509 0.74254 0.89899 0.91673 0.92112 0.93008 0.95000 0.92998 0.94256 0.90941 0.88324 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.05 10.19 71.23 0.73 0.78 16 2 C 0.24 2.14 6.83 43.11 0.29 2.43 16 3 C -0.19 -0.73 9.39 22.15 0.21 -0.53 16 4 C 0.18 2.09 6.86 41.29 0.28 2.37 16 5 C -0.12 -0.64 10.13 71.24 0.72 0.08 16 6 N -0.33 -7.97 3.91 -185.76 -0.73 -8.70 16 7 N -0.29 -9.18 12.67 -52.60 -0.67 -9.85 16 8 C 0.23 7.51 7.92 137.39 1.09 8.60 16 9 C 0.61 21.07 7.80 86.87 0.68 21.75 16 10 O -0.54 -21.72 16.73 -3.75 -0.06 -21.78 16 11 N -0.68 -20.73 5.08 -444.96 -2.26 -22.98 16 12 C 0.16 5.25 2.41 45.03 0.11 5.36 16 13 C -0.13 -5.12 5.66 30.68 0.17 -4.95 16 14 C 0.13 5.73 4.20 86.36 0.36 6.09 16 15 N -0.62 -29.57 2.77 -699.09 -1.94 -31.51 16 16 C -0.24 -13.92 10.03 84.03 0.84 -13.08 16 17 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 18 C -0.03 -2.01 5.23 84.86 0.44 -1.57 16 19 N -0.95 -61.04 13.97 21.65 0.30 -60.74 16 20 Si 0.94 48.47 24.34 68.60 1.67 50.14 16 21 H -0.28 -14.04 6.62 99.48 0.66 -13.38 16 22 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 23 H -0.26 -13.02 6.64 99.48 0.66 -12.36 16 24 C 0.15 5.47 6.52 86.37 0.56 6.03 16 25 C -0.13 -3.85 5.55 30.67 0.17 -3.68 16 26 N -0.53 -16.68 10.89 -192.61 -2.10 -18.77 16 27 C 0.44 11.80 8.99 261.57 2.35 14.15 16 28 N -0.49 -10.28 10.40 -185.60 -1.93 -12.21 16 29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.13 -1.02 8.09 -2.38 -0.02 -1.04 16 32 H 0.24 -1.98 8.06 -2.91 -0.02 -2.00 16 33 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.14 -0.48 8.09 -2.39 -0.02 -0.50 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.42 11.39 8.27 -92.71 -0.77 10.62 16 37 H 0.08 2.89 7.58 -2.39 -0.02 2.88 16 38 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 2.59 4.50 -2.39 -0.01 2.58 16 41 H 0.03 1.43 7.07 -2.38 -0.02 1.41 16 42 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 45 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -88.01 378.04 1.47 -86.54 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.16 Total: 6.02 kcal Atomic # 6 Polarization: 34.83 SS G_CDS: 9.01 Total: 43.85 kcal Atomic # 7 Polarization: -155.45 SS G_CDS: -9.31 Total: -164.76 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.67 Total: 50.14 kcal Total: -88.01 1.47 -86.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.920 kcal (2) G-P(sol) polarization free energy of solvation -88.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds