Wall clock time and date at job start Wed Apr 1 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36605 * 126.58101 * 2 1 4 4 C 1.47516 * 125.76992 * 359.94735 * 3 2 1 5 5 O 1.21621 * 119.99885 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99727 * 180.02562 * 4 3 2 7 7 C 1.40556 * 119.99583 * 179.97438 * 6 4 3 8 8 C 1.40658 * 126.08653 * 0.02562 * 7 6 4 9 9 N 1.30907 * 108.38995 * 179.73530 * 8 7 6 10 10 N 1.40065 * 108.40729 * 0.38340 * 9 8 7 11 11 C 1.37320 * 126.06888 * 179.87912 * 10 9 8 12 12 H 1.08002 * 120.00430 * 179.69231 * 11 10 9 13 13 C 1.38992 * 119.99664 * 359.41107 * 11 10 9 14 14 N 1.31294 * 120.00157 * 0.27652 * 13 11 10 15 15 Si 1.86803 * 119.99838 * 180.27798 * 13 11 10 16 16 H 1.48506 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 119.99952 * 15 13 11 18 18 H 1.48498 * 109.47018 * 239.99998 * 15 13 11 19 19 C 1.35688 * 126.08240 * 179.97438 * 7 6 4 20 20 N 1.34401 * 108.45831 * 180.20874 * 3 2 1 21 21 N 1.28756 * 109.52626 * 359.58752 * 20 3 2 22 22 N 1.34828 * 126.58195 * 179.97438 * 2 1 3 23 23 C 1.46496 * 126.59901 * 0.06528 * 22 2 1 24 24 C 1.52999 * 109.47215 * 90.00075 * 23 22 2 25 25 C 1.54258 * 110.03320 * 292.17072 * 24 23 22 26 26 C 1.54891 * 104.19512 * 217.10467 * 25 24 23 27 27 C 1.54882 * 102.74948 * 37.94420 * 26 25 24 28 28 C 1.53874 * 110.03073 * 174.99935 * 24 23 22 29 29 H 1.08993 * 109.47266 * 90.02538 * 1 2 3 30 30 H 1.09004 * 109.46736 * 210.02400 * 1 2 3 31 31 H 1.08997 * 109.47141 * 330.02061 * 1 2 3 32 32 H 0.96997 * 120.00168 * 0.02562 * 6 4 3 33 33 H 1.07995 * 125.80504 * 359.97438 * 8 7 6 34 34 H 0.96996 * 120.00263 * 179.97438 * 14 13 11 35 35 H 1.08004 * 126.24835 * 0.06161 * 19 7 6 36 36 H 1.09001 * 109.47152 * 210.00327 * 23 22 2 37 37 H 1.09005 * 109.46930 * 330.00190 * 23 22 2 38 38 H 1.09000 * 110.01297 * 53.61180 * 24 23 22 39 39 H 1.09001 * 110.48624 * 335.78287 * 25 24 23 40 40 H 1.09001 * 110.49267 * 98.42356 * 25 24 23 41 41 H 1.08996 * 110.75304 * 279.62392 * 26 25 24 42 42 H 1.09001 * 110.91421 * 156.33180 * 26 25 24 43 43 H 1.09003 * 110.48490 * 203.38514 * 27 26 25 44 44 H 1.09000 * 110.49237 * 80.73315 * 27 26 25 45 45 H 1.08996 * 110.03644 * 238.56832 * 28 24 23 46 46 H 1.08995 * 110.03457 * 0.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8738 2.5027 -0.0011 5 8 0.6858 2.7628 -0.0026 6 7 2.7818 3.4986 -0.0015 7 6 2.3556 4.8380 -0.0031 8 6 1.0212 5.2829 -0.0039 9 7 1.0223 6.5919 0.0004 10 7 2.3516 7.0332 -0.0048 11 6 2.7692 8.3413 -0.0050 12 1 3.8245 8.5713 -0.0043 13 6 1.8339 9.3694 -0.0120 14 7 0.5511 9.0898 -0.0130 15 14 2.4020 11.1489 -0.0201 16 1 3.8864 11.1947 -0.0169 17 1 1.8880 11.8271 -1.2370 18 1 1.8834 11.8395 1.1879 19 6 3.1583 5.9320 -0.0032 20 7 3.5984 0.6789 -0.0046 21 7 3.6300 -0.6083 0.0012 22 7 2.3105 -1.0827 0.0005 23 6 1.8866 -2.4850 -0.0002 24 6 1.7404 -2.9728 -1.4430 25 6 0.5546 -2.2594 -2.1244 26 6 -0.0799 -3.3504 -3.0223 27 6 0.0462 -4.6253 -2.1520 28 6 1.4173 -4.4772 -1.4604 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 3.7293 3.2911 -0.0014 33 1 0.1449 4.6518 -0.0038 34 1 -0.1017 9.8073 -0.0175 35 1 4.2383 5.9317 -0.0029 36 1 2.6329 -3.0904 0.5142 37 1 0.9291 -2.5753 0.5127 38 1 2.6599 -2.7820 -1.9963 39 1 -0.1622 -1.9142 -1.3793 40 1 0.9082 -1.4250 -2.7301 41 1 0.4798 -3.4597 -3.9512 42 1 -1.1264 -3.1250 -3.2279 43 1 0.0292 -5.5177 -2.7778 44 1 -0.7526 -4.6623 -1.4113 45 1 2.1794 -5.0163 -2.0231 46 1 1.3643 -4.8596 -0.4412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789920175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:47 Heat of formation + Delta-G solvation = 129.235753 kcal Electronic energy + Delta-G solvation = -29245.524708 eV Core-core repulsion = 25173.771808 eV Total energy + Delta-G solvation = -4071.752900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29920 -39.76038 -38.97517 -38.26020 -34.94629 -34.13974 -33.07111 -32.48713 -30.41520 -30.08946 -29.21354 -28.34916 -27.27392 -25.79563 -24.89655 -23.25265 -21.64342 -20.98731 -20.88498 -20.18763 -20.04478 -19.29846 -17.97135 -17.14887 -16.56348 -16.40899 -15.61249 -15.39128 -15.29115 -15.05594 -14.53676 -14.31850 -14.11921 -13.96849 -13.93519 -13.48431 -13.27450 -13.09059 -12.97701 -12.84648 -12.68955 -12.00428 -11.90712 -11.64582 -11.63528 -11.53083 -11.48243 -11.36200 -11.24605 -11.13541 -11.05088 -10.96686 -10.88534 -10.47523 -10.19112 -10.09048 -9.29965 -9.14565 -9.04264 -8.76431 -8.00576 -6.62535 -6.51680 -4.17590 1.12360 1.85941 1.92903 2.97834 3.08507 3.14285 3.41739 3.61662 3.84515 3.89130 3.97435 4.01713 4.05928 4.25320 4.33386 4.52428 4.56725 4.67367 4.69974 4.76965 4.92639 4.98408 5.02450 5.06735 5.11734 5.16226 5.19088 5.30775 5.35636 5.41011 5.46341 5.59346 5.63824 5.69309 5.77293 5.81434 5.88570 6.02172 6.32489 6.38977 6.53026 6.96220 7.01029 7.17810 7.28744 7.90049 7.96194 8.26473 8.35502 8.67180 8.90076 9.42906 9.72120 10.44506 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.001956 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.224596 B =14311.140221 C =14825.098361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.123 3.877 3 C -0.092 4.092 4 C 0.586 3.414 5 O -0.535 6.535 6 N -0.605 5.605 7 C -0.058 4.058 8 C -0.031 4.031 9 N -0.260 5.260 10 N -0.143 5.143 11 C -0.322 4.322 12 H 0.117 0.883 13 C 0.046 3.954 14 N -0.771 5.771 15 Si 0.934 3.066 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.080 4.080 20 N -0.207 5.207 21 N -0.075 5.075 22 N -0.361 5.361 23 C 0.128 3.872 24 C -0.109 4.109 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.405 0.595 33 H 0.177 0.823 34 H 0.274 0.726 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -26.040 -2.153 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 C -0.231 4.231 4 C 0.371 3.629 5 O -0.412 6.412 6 N -0.246 5.246 7 C -0.164 4.164 8 C -0.207 4.207 9 N -0.092 5.092 10 N 0.089 4.911 11 C -0.454 4.454 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.397 5.397 15 Si 0.758 3.242 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.231 4.231 20 N -0.080 5.080 21 N -0.053 5.053 22 N -0.148 5.148 23 C 0.006 3.994 24 C -0.129 4.129 25 C -0.169 4.169 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.154 4.154 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.239 0.761 33 H 0.194 0.806 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.582 -25.091 -2.138 25.188 hybrid contribution 0.521 -0.076 -0.015 0.527 sum -0.061 -25.166 -2.153 25.258 Atomic orbital electron populations 1.20836 0.84972 1.05197 1.04605 1.21816 0.96100 0.86241 0.97327 1.21331 0.88746 0.95645 1.17415 1.16514 0.85646 0.81895 0.78886 1.90648 1.15913 1.82682 1.51983 1.42259 1.09156 1.03643 1.69554 1.17261 0.93734 0.81661 1.23715 1.24114 0.95764 0.92920 1.07913 1.78238 0.96270 1.08962 1.25680 1.44545 1.03228 1.04092 1.39236 1.19921 0.94296 0.77927 1.53260 0.86570 1.25640 0.94872 1.01076 0.95539 1.70226 1.00424 1.33465 1.35625 0.85770 0.79423 0.80568 0.78418 1.18688 1.19956 1.19953 1.21286 0.95888 0.86361 1.19567 1.74589 1.19322 1.04069 1.09979 1.81928 0.96166 1.03520 1.23733 1.50359 1.06346 1.07200 1.50863 1.22190 1.02143 0.76341 0.98695 1.22234 1.00472 0.95953 0.94222 1.22702 0.96711 0.98209 0.99284 1.22485 1.00969 0.94511 0.98215 1.22377 0.96845 0.98162 0.98893 1.22130 0.97874 0.94054 1.01343 0.88907 0.91065 0.86678 0.76138 0.80599 0.91577 0.83578 0.87732 0.88088 0.89748 0.90554 0.91380 0.91446 0.91192 0.91472 0.91387 0.91068 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 7.87 36.00 0.28 -0.67 16 2 C 0.12 1.54 6.56 -81.87 -0.54 1.00 16 3 C -0.09 -1.46 6.99 -83.55 -0.58 -2.04 16 4 C 0.59 11.14 7.79 -12.48 -0.10 11.04 16 5 O -0.53 -11.08 11.86 5.26 0.06 -11.02 16 6 N -0.61 -11.98 5.46 -10.94 -0.06 -12.04 16 7 C -0.06 -1.39 6.90 -83.85 -0.58 -1.97 16 8 C -0.03 -0.83 10.85 -17.03 -0.18 -1.02 16 9 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 10 N -0.14 -4.00 3.74 -11.40 -0.04 -4.05 16 11 C -0.32 -8.65 10.25 -14.81 -0.15 -8.80 16 12 H 0.12 2.81 7.83 -52.49 -0.41 2.39 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 14 N -0.77 -21.70 11.81 55.50 0.66 -21.05 16 15 Si 0.93 19.19 29.55 -169.99 -5.02 14.16 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 20 N -0.21 -3.29 12.04 32.85 0.40 -2.89 16 21 N -0.07 -1.05 13.78 60.35 0.83 -0.22 16 22 N -0.36 -3.97 3.54 -56.85 -0.20 -4.17 16 23 C 0.13 0.83 5.39 -4.04 -0.02 0.81 16 24 C -0.11 -0.67 3.15 -89.51 -0.28 -0.95 16 25 C -0.13 -0.87 5.20 -25.08 -0.13 -1.00 16 26 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 27 C -0.13 -0.55 6.83 -25.07 -0.17 -0.72 16 28 C -0.12 -0.50 6.46 -25.61 -0.17 -0.67 16 29 H 0.09 0.83 7.05 -51.93 -0.37 0.46 16 30 H 0.07 0.46 6.93 -51.93 -0.36 0.10 16 31 H 0.11 1.39 6.43 -51.93 -0.33 1.05 16 32 H 0.40 7.00 8.51 -40.82 -0.35 6.65 16 33 H 0.18 4.52 5.91 -52.49 -0.31 4.21 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.15 3.02 8.06 -52.48 -0.42 2.60 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.46 7.02 -51.93 -0.36 0.09 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.46 5.00 -51.93 -0.26 0.20 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.22 7.67 -51.93 -0.40 -0.18 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -34.07 375.49 -6.57 -40.64 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.09 Total: 9.18 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.08 Total: -6.88 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 1.90 Total: -51.73 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.07 -6.57 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789920175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.873 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds