Wall clock time and date at job start Wed Apr 1 2020 02:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38771 * 125.52004 * 2 1 4 4 C 1.38820 * 107.63899 * 179.97438 * 3 2 1 5 5 N 1.34051 * 132.54625 * 179.97438 * 4 3 2 6 6 C 1.31458 * 120.97431 * 180.02562 * 5 4 3 7 7 C 1.39612 * 120.38233 * 359.97438 * 6 5 4 8 8 C 1.36701 * 119.37315 * 0.02562 * 7 6 5 9 9 N 1.38356 * 120.51582 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00098 * 339.72646 * 9 8 7 11 11 O 1.21567 * 119.99922 * 3.34627 * 10 9 8 12 12 N 1.34771 * 119.99783 * 183.34618 * 10 9 8 13 13 C 1.46508 * 119.99805 * 180.02562 * 12 10 9 14 14 C 1.53044 * 109.45812 * 275.02683 * 13 12 10 15 15 C 1.53192 * 109.31359 * 178.59791 * 14 13 12 16 16 N 1.46930 * 108.76231 * 54.65631 * 15 14 13 17 17 C 1.36938 * 120.63132 * 126.36150 * 16 15 14 18 18 H 1.07997 * 119.99983 * 329.16444 * 17 16 15 19 19 C 1.38802 * 119.99992 * 149.16188 * 17 16 15 20 20 N 1.31618 * 120.00382 * 349.92424 * 19 17 16 21 21 Si 1.86807 * 120.00044 * 169.92502 * 19 17 16 22 22 H 1.48503 * 109.47042 * 89.99827 * 21 19 17 23 23 H 1.48502 * 109.46857 * 210.00039 * 21 19 17 24 24 H 1.48497 * 109.46839 * 329.99830 * 21 19 17 25 25 C 1.46930 * 118.73992 * 306.38540 * 16 15 14 26 26 C 1.53038 * 109.45959 * 154.97316 * 13 12 10 27 27 N 1.36941 * 118.96678 * 359.97438 * 8 7 6 28 28 N 1.31337 * 125.51362 * 179.69061 * 2 1 3 29 29 H 1.09006 * 109.47118 * 90.00286 * 1 2 3 30 30 H 1.09000 * 109.47571 * 210.00126 * 1 2 3 31 31 H 1.09000 * 109.47175 * 330.00720 * 1 2 3 32 32 H 1.07999 * 126.17718 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.80773 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.31396 * 180.02562 * 7 6 5 35 35 H 0.97003 * 120.00471 * 159.72573 * 9 8 7 36 36 H 0.97003 * 120.00714 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46097 * 34.99623 * 13 12 10 38 38 H 1.08999 * 109.49575 * 298.56825 * 14 13 12 39 39 H 1.09003 * 109.49628 * 58.66175 * 14 13 12 40 40 H 1.09000 * 109.59945 * 294.87354 * 15 14 13 41 41 H 1.08996 * 109.70460 * 174.50496 * 15 14 13 42 42 H 0.97004 * 120.00422 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58562 * 293.82152 * 25 16 15 44 44 H 1.08998 * 109.70299 * 173.46453 * 25 16 15 45 45 H 1.08991 * 109.49713 * 301.33529 * 26 13 12 46 46 H 1.09006 * 109.49775 * 61.43698 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.1295 0.0000 4 6 3.6344 0.7032 0.0006 5 7 4.8002 1.3648 0.0004 6 6 5.9449 0.7184 0.0006 7 6 5.9676 -0.6775 0.0016 8 6 4.7873 -1.3673 0.0017 9 7 4.7822 -2.7508 0.0032 10 6 5.8747 -3.4292 -0.4000 11 8 6.8852 -2.8270 -0.7070 12 7 5.8470 -4.7752 -0.4628 13 6 7.0348 -5.5127 -0.9006 14 6 7.0540 -5.5873 -2.4291 15 6 8.3150 -6.3285 -2.8844 16 7 8.3619 -7.6361 -2.2160 17 6 8.4983 -8.7876 -2.9445 18 1 8.0927 -8.8456 -3.9437 19 6 9.1578 -9.8801 -2.3986 20 7 9.8219 -9.7513 -1.2696 21 14 9.1030 -11.5335 -3.2665 22 1 10.2423 -11.6334 -4.2137 23 1 9.1973 -12.6231 -2.2619 24 1 7.8257 -11.6582 -4.0135 25 6 8.2592 -7.6848 -0.7511 26 6 6.9990 -6.9281 -0.3197 27 7 3.6102 -0.6675 0.0015 28 7 2.2699 -1.0690 0.0058 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.9741 2.1548 -0.0004 33 1 6.8732 1.2705 0.0009 34 1 6.9086 -1.2074 0.0021 35 1 3.9923 -3.2326 0.2944 36 1 5.0407 -5.2557 -0.2182 37 1 7.9304 -4.9992 -0.5509 38 1 6.1710 -6.1226 -2.7782 39 1 7.0558 -4.5788 -2.8426 40 1 9.1975 -5.7484 -2.6146 41 1 8.2876 -6.4711 -3.9646 42 1 10.2832 -10.5148 -0.8883 43 1 9.1371 -7.2153 -0.3074 44 1 8.1935 -8.7217 -0.4216 45 1 6.9616 -6.8740 0.7682 46 1 6.1165 -7.4507 -0.6891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932437948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:11 Heat of formation + Delta-G solvation = 124.310385 kcal Electronic energy + Delta-G solvation = -29444.635637 eV Core-core repulsion = 25372.669157 eV Total energy + Delta-G solvation = -4071.966480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.66032 -40.83393 -38.45699 -37.66797 -35.97696 -34.77429 -33.33438 -32.39665 -31.45223 -30.21414 -29.58272 -29.20199 -28.39995 -25.41671 -24.23754 -23.60943 -22.42187 -22.06641 -21.18537 -20.57685 -19.75282 -19.28581 -18.33953 -17.51351 -16.85302 -16.56207 -16.54066 -15.91716 -15.51786 -15.11423 -14.82813 -14.52345 -14.11024 -13.88920 -13.82986 -13.63265 -13.50523 -13.32798 -13.11730 -12.89943 -12.67498 -12.48735 -12.47168 -12.01911 -11.58098 -11.45335 -11.13614 -10.98752 -10.80207 -10.63559 -10.55805 -10.37742 -10.12782 -10.04184 -9.93379 -9.79536 -9.66891 -9.53327 -8.99272 -8.55450 -7.89833 -6.71998 -5.86086 -3.33687 0.33196 0.73802 1.39727 2.18983 2.27830 2.76781 3.30488 3.32438 3.39443 3.40768 3.63684 3.73413 3.96180 4.42491 4.51986 4.68334 4.94179 5.02044 5.17565 5.20738 5.23833 5.30205 5.37110 5.38743 5.45271 5.52099 5.53069 5.69334 5.72758 5.78592 5.94833 6.05105 6.17928 6.18726 6.26428 6.37166 6.42949 6.46031 6.59019 6.69404 6.74359 6.90576 7.18483 7.24131 7.47078 7.52121 7.60048 7.72178 8.10042 8.39864 9.14633 9.75573 10.32920 11.22385 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.002026 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.565378 B =13814.529565 C =14406.518037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.119 3.881 3 C -0.278 4.278 4 C 0.289 3.711 5 N -0.495 5.495 6 C 0.205 3.795 7 C -0.264 4.264 8 C 0.447 3.553 9 N -0.669 5.669 10 C 0.709 3.291 11 O -0.554 6.554 12 N -0.721 5.721 13 C 0.166 3.834 14 C -0.141 4.141 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.148 4.148 27 N -0.332 5.332 28 N -0.329 5.329 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.205 0.795 35 H 0.419 0.581 36 H 0.397 0.603 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.255 0.745 43 H 0.022 0.978 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 18.347 5.764 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 C -0.309 4.309 4 C 0.061 3.939 5 N -0.210 5.210 6 C 0.025 3.975 7 C -0.292 4.292 8 C 0.233 3.767 9 N -0.316 5.316 10 C 0.409 3.591 11 O -0.430 6.430 12 N -0.373 5.373 13 C 0.063 3.937 14 C -0.182 4.182 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.188 4.188 27 N -0.107 5.107 28 N -0.155 5.155 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.221 0.779 35 H 0.256 0.744 36 H 0.231 0.769 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.947 18.209 5.536 23.595 hybrid contribution -0.793 -1.357 -0.164 1.580 sum -14.740 16.852 5.372 23.025 Atomic orbital electron populations 1.20283 0.85588 1.03847 1.03578 1.22234 0.97200 0.90100 0.94445 1.20782 0.87372 1.00122 1.22624 1.20740 0.95124 0.78640 0.99383 1.68268 0.96143 1.36836 1.19729 1.23338 0.96107 0.91234 0.86868 1.22694 0.98573 0.95625 1.12347 1.17331 0.83159 0.82122 0.94122 1.42413 1.18948 1.03247 1.67008 1.15763 0.82274 0.82805 0.78280 1.90790 1.30876 1.66735 1.54609 1.45699 1.18306 1.03233 1.70053 1.21156 0.85558 0.91984 0.95012 1.22430 1.01266 0.99990 0.94483 1.20881 0.93157 0.87324 0.96569 1.44069 1.84793 1.00797 1.01903 1.19173 1.29505 0.90285 0.99281 0.91736 1.25165 0.96900 0.99489 0.97947 1.69942 1.34753 1.29968 1.20375 0.86253 0.77922 0.83560 0.78752 1.21283 1.21551 1.20485 1.20800 0.90323 1.00346 0.83764 1.22610 1.03431 0.93732 0.99020 1.47178 1.05360 1.07740 1.50415 1.77678 0.82566 1.21800 1.33414 0.89839 0.90466 0.89754 0.82097 0.80009 0.77875 0.74353 0.76864 0.89401 0.92256 0.92602 0.95993 0.92424 0.93491 0.95976 0.88506 0.92563 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.43 36.00 0.38 -0.08 16 2 C 0.12 1.26 7.16 -82.61 -0.59 0.67 16 3 C -0.28 -3.13 10.83 -39.17 -0.42 -3.55 16 4 C 0.29 3.79 7.92 -155.54 -1.23 2.55 16 5 N -0.50 -6.10 10.49 -12.34 -0.13 -6.23 16 6 C 0.21 2.07 11.25 -17.20 -0.19 1.88 16 7 C -0.26 -3.04 8.87 -39.62 -0.35 -3.39 16 8 C 0.45 5.55 7.60 -152.50 -1.16 4.39 16 9 N -0.67 -7.41 5.38 -15.60 -0.08 -7.49 16 10 C 0.71 9.17 8.42 -86.92 -0.73 8.43 16 11 O -0.55 -8.59 12.72 5.31 0.07 -8.52 16 12 N -0.72 -8.78 5.08 -58.63 -0.30 -9.08 16 13 C 0.17 2.57 2.42 -67.88 -0.16 2.41 16 14 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 15 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 16 N -0.59 -14.14 2.99 -172.32 -0.52 -14.65 16 17 C -0.25 -6.67 9.59 -15.06 -0.14 -6.82 16 18 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 19 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 20 N -0.91 -25.29 10.97 55.49 0.61 -24.68 16 21 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.17 3.86 5.26 -3.71 -0.02 3.84 16 26 C -0.15 -2.47 5.55 -26.61 -0.15 -2.62 16 27 N -0.33 -4.34 3.92 -11.51 -0.05 -4.38 16 28 N -0.33 -4.14 12.66 33.53 0.42 -3.71 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.21 2.45 5.16 -52.88 -0.27 2.18 16 35 H 0.42 3.81 8.84 -40.82 -0.36 3.45 16 36 H 0.40 3.79 8.62 -40.82 -0.35 3.43 16 37 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 2.42 6.04 -51.93 -0.31 2.10 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -32.06 377.34 -10.66 -42.72 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.30 Total: 6.16 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -5.05 Total: 8.17 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -0.04 Total: -70.23 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.06 -10.66 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932437948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.033 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds