Wall clock time and date at job start Wed Apr 1 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32456 * 125.18265 * 2 1 4 4 C 1.32867 * 109.80738 * 180.08282 * 3 2 1 5 5 N 1.33742 * 132.44088 * 179.33309 * 4 3 2 6 6 C 1.31202 * 121.19766 * 179.97438 * 5 4 3 7 7 C 1.40103 * 120.45185 * 0.02562 * 6 5 4 8 8 C 1.36992 * 119.05452 * 359.97124 * 7 6 5 9 9 C 1.47712 * 120.63881 * 179.97438 * 8 7 6 10 10 O 1.21559 * 119.99794 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00580 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00402 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.44928 * 34.96484 * 12 11 9 14 14 C 1.53046 * 109.46205 * 275.00040 * 12 11 9 15 15 C 1.53191 * 109.31173 * 301.34591 * 14 12 11 16 16 N 1.46921 * 108.77688 * 305.36305 * 15 14 12 17 17 C 1.36943 * 120.63268 * 233.58717 * 16 15 14 18 18 H 1.07993 * 119.99880 * 153.23869 * 17 16 15 19 19 C 1.38806 * 119.99459 * 333.24199 * 17 16 15 20 20 N 1.31626 * 119.99805 * 158.74910 * 19 17 16 21 21 Si 1.86795 * 120.00497 * 339.02394 * 19 17 16 22 22 H 1.48499 * 109.47486 * 95.06923 * 21 19 17 23 23 H 1.48501 * 109.47225 * 215.07472 * 21 19 17 24 24 H 1.48500 * 109.47084 * 335.07061 * 21 19 17 25 25 C 1.46934 * 118.73894 * 53.85870 * 16 15 14 26 26 C 1.53038 * 109.46017 * 154.93177 * 12 11 9 27 27 H 1.09006 * 109.50061 * 178.63970 * 26 12 11 28 28 C 1.52991 * 109.50087 * 298.70356 * 26 12 11 29 29 N 1.36684 * 107.18443 * 359.56395 * 4 3 2 30 30 N 1.31354 * 125.18658 * 179.42173 * 2 1 3 31 31 H 1.09000 * 109.47038 * 270.57839 * 1 2 3 32 32 H 1.08997 * 109.47046 * 30.57443 * 1 2 3 33 33 H 1.08995 * 109.47257 * 150.58195 * 1 2 3 34 34 H 1.08001 * 119.77545 * 179.97438 * 6 5 4 35 35 H 1.08005 * 120.47372 * 179.97438 * 7 6 5 36 36 H 0.97000 * 119.99895 * 0.02562 * 11 9 8 37 37 H 1.08994 * 109.50119 * 181.39064 * 14 12 11 38 38 H 1.08998 * 109.52119 * 61.30841 * 14 12 11 39 39 H 1.09002 * 109.58351 * 185.57317 * 15 14 12 40 40 H 1.08998 * 109.70471 * 65.21836 * 15 14 12 41 41 H 0.96994 * 120.00149 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.58477 * 65.92945 * 25 16 15 43 43 H 1.08996 * 109.58547 * 186.35229 * 25 16 15 44 44 H 1.09001 * 109.46890 * 59.99754 * 28 26 12 45 45 H 1.08997 * 109.47724 * 179.97438 * 28 26 12 46 46 H 1.08999 * 109.47275 * 300.00267 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0826 0.0000 4 6 3.5514 0.7303 -0.0018 5 7 4.6832 1.4426 -0.0140 6 6 5.8562 0.8548 -0.0124 7 6 5.9499 -0.5430 0.0017 8 6 4.7996 -1.2868 0.0144 9 6 4.8576 -2.7628 0.0290 10 8 5.9334 -3.3287 0.0302 11 7 3.7178 -3.4820 0.0409 12 6 3.7754 -4.9457 0.0558 13 1 4.6336 -5.2692 0.6449 14 6 3.9156 -5.4652 -1.3769 15 6 2.7255 -4.9798 -2.2105 16 7 1.4822 -5.3851 -1.5406 17 6 0.5247 -6.0938 -2.2161 18 1 -0.1462 -6.7453 -1.6761 19 6 0.4167 -5.9747 -3.5948 20 7 -0.1791 -6.9187 -4.2922 21 14 1.1236 -4.4785 -4.4614 22 1 2.4899 -4.7904 -4.9524 23 1 0.2554 -4.1157 -5.6102 24 1 1.1874 -3.3398 -3.5103 25 6 1.2831 -5.0103 -0.1339 26 6 2.4918 -5.5001 0.6780 27 1 2.5235 -6.5897 0.6675 28 6 2.3693 -5.0069 2.1210 29 7 3.5945 -0.6358 0.0069 30 7 2.2640 -1.0735 0.0108 31 1 -0.3633 0.0104 1.0276 32 1 -0.3633 0.8848 -0.5227 33 1 -0.3633 -0.8951 -0.5047 34 1 6.7557 1.4525 -0.0229 35 1 6.9153 -1.0273 0.0026 36 1 2.8594 -3.0304 0.0395 37 1 3.9336 -6.5550 -1.3687 38 1 4.8417 -5.0893 -1.8117 39 1 2.7682 -5.4273 -3.2035 40 1 2.7563 -3.8938 -2.2975 41 1 -0.2549 -6.8354 -5.2556 42 1 1.1999 -3.9265 -0.0528 43 1 0.3738 -5.4779 0.2436 44 1 2.3365 -3.9174 2.1310 45 1 1.4548 -5.4015 2.5636 46 1 3.2292 -5.3497 2.6965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944152922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:15 Heat of formation + Delta-G solvation = 112.659828 kcal Electronic energy + Delta-G solvation = -31792.404199 eV Core-core repulsion = 27719.932513 eV Total energy + Delta-G solvation = -4072.471686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.22383 -41.60480 -40.19412 -39.27404 -36.30106 -35.92385 -34.09402 -33.47057 -33.42156 -32.12564 -31.99229 -29.94338 -27.92541 -27.52548 -26.36952 -25.24904 -23.80969 -23.30500 -22.80653 -22.02900 -20.47512 -19.88957 -19.51524 -18.88033 -18.27883 -18.07314 -17.43212 -16.88902 -16.63571 -16.47388 -16.02262 -15.60045 -15.37560 -15.24416 -15.00316 -14.78355 -14.71217 -14.66632 -14.29480 -14.07226 -13.94324 -13.60703 -13.54991 -13.39822 -13.30439 -13.03005 -12.91294 -12.83522 -12.38401 -12.17870 -12.06378 -11.86975 -11.78584 -11.53290 -11.47985 -11.37473 -11.15758 -10.82539 -10.79196 -10.33176 -10.12323 -8.99840 -8.22575 -5.52228 -1.22349 -0.52973 0.48839 1.01665 1.18158 1.30374 1.37412 1.55266 1.64384 2.07304 2.21379 2.32726 2.56680 2.97466 3.11376 3.25607 3.39582 3.59129 3.65398 3.79874 3.82910 3.96602 4.11604 4.14642 4.30448 4.43653 4.48124 4.55124 4.60731 4.61142 4.63696 4.68273 4.74679 4.77904 4.79506 4.83999 4.91515 5.03152 5.07850 5.12133 5.19253 5.20008 5.27213 5.43593 5.80833 6.06702 6.08633 6.23395 6.60886 6.75043 6.84174 7.55756 7.97156 8.97236 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.004573 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.199262 B = 6120.766442 C = 6828.284596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.276 3.724 3 N -0.544 5.544 4 C 0.427 3.573 5 N -0.461 5.461 6 C 0.231 3.769 7 C -0.121 4.121 8 C 0.114 3.886 9 C 0.553 3.447 10 O -0.532 6.532 11 N -0.697 5.697 12 C 0.159 3.841 13 H 0.100 0.900 14 C -0.139 4.139 15 C 0.132 3.868 16 N -0.613 5.613 17 C -0.240 4.240 18 H 0.065 0.935 19 C -0.024 4.024 20 N -0.950 5.950 21 Si 0.933 3.067 22 H -0.287 1.287 23 H -0.309 1.309 24 H -0.272 1.272 25 C 0.150 3.850 26 C -0.110 4.110 27 H 0.091 0.909 28 C -0.133 4.133 29 N -0.324 5.324 30 N -0.366 5.366 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.263 0.737 35 H 0.221 0.779 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.459 15.167 14.119 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.004 4.004 3 N -0.278 5.278 4 C 0.067 3.933 5 N -0.176 5.176 6 C 0.046 3.954 7 C -0.146 4.146 8 C -0.006 4.006 9 C 0.337 3.663 10 O -0.409 6.409 11 N -0.353 5.353 12 C 0.056 3.944 13 H 0.118 0.882 14 C -0.179 4.179 15 C 0.006 3.994 16 N -0.337 5.337 17 C -0.370 4.370 18 H 0.082 0.918 19 C -0.219 4.219 20 N -0.596 5.596 21 Si 0.764 3.236 22 H -0.214 1.214 23 H -0.238 1.238 24 H -0.197 1.197 25 C 0.025 3.975 26 C -0.130 4.130 27 H 0.109 0.891 28 C -0.191 4.191 29 N -0.106 5.106 30 N -0.200 5.200 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.279 0.721 35 H 0.238 0.762 36 H 0.259 0.741 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.236 15.196 13.992 24.534 hybrid contribution -0.304 -0.221 -1.230 1.286 sum 12.933 14.976 12.762 23.546 Atomic orbital electron populations 1.20508 0.80153 1.05619 1.06180 1.25217 0.99977 0.83935 0.91273 1.70682 0.97315 1.29192 1.30600 1.23106 0.94440 0.78458 0.97255 1.67975 0.96107 1.36574 1.16983 1.24800 0.95593 0.91806 0.83213 1.22945 0.98617 0.95354 0.97694 1.21257 0.83322 0.94110 1.01891 1.17776 0.85168 0.85188 0.78171 1.90820 1.28383 1.70585 1.51120 1.46589 1.09673 1.08307 1.70682 1.21041 0.99621 0.77785 0.95999 0.88195 1.22309 0.97567 1.01968 0.96050 1.21151 0.86724 0.95802 0.95701 1.44446 1.15458 1.64348 1.09450 1.18915 1.10948 1.16925 0.90203 0.91778 1.25701 0.99479 0.99490 0.97257 1.69935 1.49496 1.33490 1.06707 0.86122 0.76605 0.83078 0.77769 1.21417 1.23771 1.19723 1.21225 0.96940 0.96765 0.82592 1.21912 0.93812 1.01544 0.95737 0.89082 1.21689 1.03022 1.00540 0.93864 1.48922 1.06130 1.09378 1.46143 1.78055 0.83958 1.22298 1.35731 0.86536 0.87462 0.89198 0.72127 0.76217 0.74110 0.90037 0.91507 0.93644 0.96916 0.92954 0.95494 0.91494 0.93649 0.91035 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.51 71.24 0.75 -0.59 16 2 C 0.28 7.98 8.09 138.68 1.12 9.10 16 3 N -0.54 -16.75 11.24 -191.24 -2.15 -18.90 16 4 C 0.43 12.10 8.99 261.61 2.35 14.45 16 5 N -0.46 -9.68 10.45 -197.69 -2.07 -11.74 16 6 C 0.23 2.28 11.26 85.24 0.96 3.24 16 7 C -0.12 -1.58 9.63 22.43 0.22 -1.36 16 8 C 0.11 2.72 6.81 40.55 0.28 3.00 16 9 C 0.55 15.61 7.76 86.75 0.67 16.28 16 10 O -0.53 -15.61 16.03 -3.90 -0.06 -15.67 16 11 N -0.70 -21.33 3.60 -445.42 -1.60 -22.93 16 12 C 0.16 4.84 2.21 45.02 0.10 4.94 16 13 H 0.10 2.78 7.57 -2.39 -0.02 2.76 16 14 C -0.14 -4.93 5.77 30.67 0.18 -4.76 16 15 C 0.13 5.80 3.94 86.36 0.34 6.14 16 16 N -0.61 -28.38 2.77 -698.26 -1.94 -30.32 16 17 C -0.24 -13.38 10.04 84.03 0.84 -12.54 16 18 H 0.06 3.82 8.05 -2.91 -0.02 3.80 16 19 C -0.02 -1.41 5.23 84.86 0.44 -0.96 16 20 N -0.95 -59.41 13.97 21.65 0.30 -59.11 16 21 Si 0.93 48.22 24.35 68.60 1.67 49.89 16 22 H -0.29 -14.41 6.70 99.48 0.67 -13.74 16 23 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 24 H -0.27 -13.87 6.49 99.48 0.65 -13.23 16 25 C 0.15 5.55 5.53 86.51 0.48 6.02 16 26 C -0.11 -3.24 2.69 -10.57 -0.03 -3.27 16 27 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 28 C -0.13 -3.08 9.05 71.98 0.65 -2.43 16 29 N -0.32 -9.26 3.93 -187.17 -0.74 -10.00 16 30 N -0.37 -11.53 10.11 -51.44 -0.52 -12.05 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.26 -0.86 8.06 -2.91 -0.02 -0.89 16 35 H 0.22 1.41 7.66 -2.91 -0.02 1.39 16 36 H 0.42 13.54 3.81 -92.71 -0.35 13.19 16 37 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 2.24 4.49 -2.39 -0.01 2.23 16 40 H 0.01 0.59 6.60 -2.39 -0.02 0.58 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.03 1.00 6.63 -2.39 -0.02 0.99 16 43 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 44 H 0.04 1.10 7.54 -2.39 -0.02 1.08 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -80.14 366.06 2.83 -77.31 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.57 Total: 16.24 kcal Atomic # 6 Polarization: 27.92 SS G_CDS: 9.36 Total: 37.27 kcal Atomic # 7 Polarization: -156.33 SS G_CDS: -8.71 Total: -165.04 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.06 Total: -15.67 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.67 Total: 49.89 kcal Total: -80.14 2.83 -77.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944152922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.970 kcal (2) G-P(sol) polarization free energy of solvation -80.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds