Wall clock time and date at job start Wed Apr 1 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32448 * 125.18838 * 2 1 4 4 C 1.32871 * 109.80720 * 179.97438 * 3 2 1 5 5 N 1.33739 * 132.43863 * 180.02562 * 4 3 2 6 6 C 1.31211 * 121.19521 * 179.97438 * 5 4 3 7 7 C 1.40090 * 120.45451 * 0.27886 * 6 5 4 8 8 C 1.37007 * 119.05483 * 359.44889 * 7 6 5 9 9 C 1.47710 * 120.63876 * 180.23781 * 8 7 6 10 10 O 1.21564 * 120.00018 * 0.31147 * 9 8 7 11 11 N 1.34775 * 119.99974 * 180.30655 * 9 8 7 12 12 C 1.46502 * 120.00049 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.45846 * 325.02302 * 12 11 9 14 14 C 1.53038 * 109.46093 * 84.99716 * 12 11 9 15 15 C 1.53188 * 109.31410 * 58.65992 * 14 12 11 16 16 N 1.46931 * 108.77664 * 54.62861 * 15 14 12 17 17 C 1.36942 * 120.62746 * 126.37318 * 16 15 14 18 18 H 1.07994 * 119.99732 * 332.84763 * 17 16 15 19 19 C 1.38803 * 119.99592 * 152.85389 * 17 16 15 20 20 N 1.31619 * 120.00007 * 159.70281 * 19 17 16 21 21 Si 1.86799 * 120.00301 * 339.69549 * 19 17 16 22 22 H 1.48494 * 109.47375 * 94.92805 * 21 19 17 23 23 H 1.48503 * 109.47207 * 214.92776 * 21 19 17 24 24 H 1.48499 * 109.47079 * 334.92766 * 21 19 17 25 25 C 1.46926 * 118.73932 * 306.39682 * 16 15 14 26 26 C 1.53036 * 109.46021 * 205.07183 * 12 11 9 27 27 H 1.08999 * 109.49966 * 181.39012 * 26 12 11 28 28 C 1.52994 * 109.50078 * 61.28792 * 26 12 11 29 29 N 1.36681 * 107.18495 * 0.02562 * 4 3 2 30 30 N 1.31359 * 125.18040 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47096 * 270.02917 * 1 2 3 32 32 H 1.09005 * 109.46352 * 30.02690 * 1 2 3 33 33 H 1.08994 * 109.47501 * 150.01941 * 1 2 3 34 34 H 1.08002 * 119.77286 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.47825 * 179.72478 * 7 6 5 36 36 H 0.97001 * 120.00023 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.49574 * 178.60608 * 14 12 11 38 38 H 1.08998 * 109.50091 * 298.70312 * 14 12 11 39 39 H 1.08991 * 109.58928 * 174.42148 * 15 14 12 40 40 H 1.09002 * 109.58391 * 294.84862 * 15 14 12 41 41 H 0.97007 * 120.00470 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58369 * 173.39833 * 25 16 15 43 43 H 1.09003 * 109.58463 * 293.81663 * 25 16 15 44 44 H 1.09005 * 109.47058 * 60.00494 * 28 26 12 45 45 H 1.09004 * 109.47289 * 179.97438 * 28 26 12 46 46 H 1.08997 * 109.47733 * 300.00427 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0824 0.0000 4 6 3.5514 0.7300 0.0006 5 7 4.6833 1.4423 0.0012 6 6 5.8563 0.8543 0.0022 7 6 5.9499 -0.5435 -0.0033 8 6 4.7994 -1.2874 0.0018 9 6 4.8573 -2.7634 0.0015 10 8 5.9331 -3.3294 0.0024 11 7 3.7175 -3.4825 0.0003 12 6 3.7749 -4.9464 0.0006 13 1 4.6313 -5.2763 -0.5876 14 6 3.9190 -5.4507 1.4383 15 6 2.7312 -4.9566 2.2700 16 7 1.4861 -5.3687 1.6077 17 6 0.5308 -6.0710 2.2930 18 1 0.8143 -6.6956 3.1271 19 6 -0.8018 -5.9801 1.9153 20 7 -1.6534 -6.9165 2.2763 21 14 -1.3865 -4.5288 0.8949 22 1 -1.3702 -4.8965 -0.5437 23 1 -2.7691 -4.1658 1.2974 24 1 -0.4852 -3.3703 1.1200 25 6 1.2856 -5.0136 0.1962 26 6 2.4896 -5.5072 -0.6123 27 1 2.5210 -6.5965 -0.5898 28 6 2.3631 -5.0289 -2.0600 29 7 3.5944 -0.6361 0.0003 30 7 2.2639 -1.0736 0.0005 31 1 -0.3633 0.0005 1.0276 32 1 -0.3632 0.8898 -0.5143 33 1 -0.3634 -0.8901 -0.5135 34 1 6.7558 1.4520 0.0031 35 1 6.9151 -1.0278 -0.0070 36 1 2.8590 -3.0308 -0.0008 37 1 3.9369 -6.5406 1.4414 38 1 4.8463 -5.0699 1.8662 39 1 2.7766 -5.3936 3.2674 40 1 2.7635 -3.8695 2.3432 41 1 -2.5848 -6.8528 2.0127 42 1 0.3771 -5.4882 -0.1745 43 1 1.2000 -3.9312 0.1004 44 1 3.2214 -5.3779 -2.6342 45 1 1.4478 -5.4290 -2.4962 46 1 2.3304 -3.9397 -2.0814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944152925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:24 Heat of formation + Delta-G solvation = 113.420864 kcal Electronic energy + Delta-G solvation = -31888.876833 eV Core-core repulsion = 27816.438147 eV Total energy + Delta-G solvation = -4072.438685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.22846 -41.60384 -40.20548 -39.28394 -36.23881 -35.90240 -33.95885 -33.74326 -33.44599 -32.09986 -31.95469 -29.98213 -27.84945 -27.48760 -26.42285 -25.26744 -24.27448 -22.95895 -22.64195 -22.02110 -20.57660 -19.86349 -19.51371 -18.93297 -18.28511 -18.07520 -17.41487 -16.81474 -16.66992 -16.38425 -16.02471 -15.62875 -15.29703 -15.20448 -14.96711 -14.83364 -14.72044 -14.64928 -14.47286 -14.07147 -13.92390 -13.65208 -13.60575 -13.45429 -13.19240 -13.06935 -12.86643 -12.74982 -12.40257 -12.18833 -12.05456 -11.88804 -11.70136 -11.59012 -11.47829 -11.36448 -11.14990 -10.83923 -10.71269 -10.33157 -10.12227 -8.98793 -8.19115 -5.52057 -1.20877 -0.52458 0.49221 1.00886 1.26506 1.38442 1.48687 1.56439 1.64480 2.06721 2.22220 2.38856 2.55907 3.00085 3.11849 3.25979 3.37222 3.56876 3.65711 3.81865 3.83649 3.91698 4.14122 4.16040 4.32049 4.42830 4.47684 4.49027 4.54172 4.54938 4.59393 4.66165 4.73246 4.75673 4.77555 4.88885 4.90865 4.96618 5.07935 5.10630 5.13355 5.18951 5.21798 5.39109 5.82249 6.07366 6.09594 6.24115 6.60139 6.74889 6.85801 7.56945 7.97476 9.00389 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.004815 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.236234 B = 5813.483824 C = 7254.727365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.276 3.724 3 N -0.542 5.542 4 C 0.429 3.571 5 N -0.461 5.461 6 C 0.232 3.768 7 C -0.118 4.118 8 C 0.114 3.886 9 C 0.556 3.444 10 O -0.530 6.530 11 N -0.699 5.699 12 C 0.160 3.840 13 H 0.101 0.899 14 C -0.136 4.136 15 C 0.150 3.850 16 N -0.613 5.613 17 C -0.250 4.250 18 H 0.053 0.947 19 C -0.031 4.031 20 N -0.955 5.955 21 Si 0.938 3.062 22 H -0.276 1.276 23 H -0.309 1.309 24 H -0.255 1.255 25 C 0.132 3.868 26 C -0.113 4.113 27 H 0.090 0.910 28 C -0.139 4.139 29 N -0.323 5.323 30 N -0.368 5.368 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.264 0.736 35 H 0.223 0.777 36 H 0.414 0.586 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.262 0.738 42 H 0.052 0.948 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.443 15.574 -9.252 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.004 4.004 3 N -0.276 5.276 4 C 0.069 3.931 5 N -0.176 5.176 6 C 0.047 3.953 7 C -0.143 4.143 8 C -0.005 4.005 9 C 0.340 3.660 10 O -0.407 6.407 11 N -0.354 5.354 12 C 0.056 3.944 13 H 0.119 0.881 14 C -0.176 4.176 15 C 0.025 3.975 16 N -0.337 5.337 17 C -0.379 4.379 18 H 0.071 0.929 19 C -0.226 4.226 20 N -0.601 5.601 21 Si 0.767 3.233 22 H -0.203 1.203 23 H -0.238 1.238 24 H -0.179 1.179 25 C 0.007 3.993 26 C -0.134 4.134 27 H 0.109 0.891 28 C -0.197 4.197 29 N -0.104 5.104 30 N -0.203 5.203 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.279 0.721 35 H 0.239 0.761 36 H 0.256 0.744 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.152 15.605 -9.229 24.958 hybrid contribution -1.275 -0.432 0.060 1.348 sum 15.877 15.173 -9.169 23.799 Atomic orbital electron populations 1.20509 0.80802 1.05954 1.05589 1.25049 0.99685 0.84103 0.91545 1.70667 0.97393 1.29009 1.30552 1.23086 0.94383 0.78453 0.97204 1.67987 0.96074 1.36537 1.17014 1.24818 0.95547 0.91870 0.83113 1.22951 0.98587 0.95279 0.97528 1.21277 0.83204 0.94138 1.01903 1.17722 0.85049 0.85107 0.78128 1.90823 1.28255 1.70530 1.51093 1.46603 1.09676 1.08294 1.70804 1.21023 0.98626 0.77824 0.96915 0.88083 1.22275 0.98237 1.01800 0.95269 1.20937 0.85168 0.95849 0.95521 1.44402 1.17963 1.64832 1.06548 1.18854 0.86912 1.18680 1.13470 0.92879 1.25861 0.95917 0.99970 1.00860 1.69957 1.04459 1.34230 1.51434 0.86016 0.76413 0.82470 0.78402 1.20260 1.23787 1.17931 1.21362 0.97140 0.96738 0.84101 1.21870 0.94277 1.01666 0.95568 0.89144 1.21746 1.02915 1.00652 0.94366 1.48914 1.06034 1.09375 1.46113 1.78082 0.84186 1.22264 1.35732 0.88174 0.86390 0.89165 0.72078 0.76068 0.74364 0.90239 0.90612 0.92573 0.96730 0.92925 0.92947 0.95529 0.90400 0.92083 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.51 71.24 0.75 -0.86 16 2 C 0.28 8.32 8.09 138.68 1.12 9.45 16 3 N -0.54 -16.84 11.24 -191.24 -2.15 -18.99 16 4 C 0.43 12.00 8.99 261.61 2.35 14.35 16 5 N -0.46 -9.37 10.45 -197.70 -2.07 -11.44 16 6 C 0.23 2.07 11.26 85.24 0.96 3.03 16 7 C -0.12 -1.41 9.63 22.43 0.22 -1.19 16 8 C 0.11 2.62 6.81 40.56 0.28 2.90 16 9 C 0.56 15.06 7.76 86.75 0.67 15.74 16 10 O -0.53 -14.75 16.03 -3.92 -0.06 -14.81 16 11 N -0.70 -21.21 3.59 -445.42 -1.60 -22.81 16 12 C 0.16 4.84 2.21 45.02 0.10 4.94 16 13 H 0.10 2.78 7.57 -2.39 -0.02 2.76 16 14 C -0.14 -4.39 5.77 30.67 0.18 -4.21 16 15 C 0.15 5.99 6.26 86.36 0.54 6.53 16 16 N -0.61 -28.66 2.77 -699.10 -1.94 -30.60 16 17 C -0.25 -14.12 10.04 84.03 0.84 -13.28 16 18 H 0.05 3.28 8.05 -2.91 -0.02 3.26 16 19 C -0.03 -1.81 5.24 84.86 0.44 -1.37 16 20 N -0.95 -59.76 13.97 21.65 0.30 -59.46 16 21 Si 0.94 45.84 24.35 68.60 1.67 47.51 16 22 H -0.28 -12.74 6.70 99.48 0.67 -12.08 16 23 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.26 -11.90 6.46 99.48 0.64 -11.26 16 25 C 0.13 5.49 3.18 86.36 0.27 5.77 16 26 C -0.11 -3.72 2.67 -10.72 -0.03 -3.75 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 C -0.14 -3.78 9.05 71.98 0.65 -3.13 16 29 N -0.32 -9.12 3.93 -187.16 -0.74 -9.85 16 30 N -0.37 -11.93 10.11 -51.45 -0.52 -12.45 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.26 -1.12 8.06 -2.91 -0.02 -1.14 16 35 H 0.22 1.11 7.66 -2.91 -0.02 1.09 16 36 H 0.41 13.83 3.82 -92.71 -0.35 13.47 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 40 H 0.01 0.60 7.74 -2.39 -0.02 0.58 16 41 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 42 H 0.05 2.43 4.49 -2.39 -0.01 2.42 16 43 H 0.03 1.13 5.48 -2.39 -0.01 1.12 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.29 7.54 -2.39 -0.02 1.27 16 Total: -1.00 -79.45 365.98 2.82 -76.63 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.57 Total: 21.36 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: 9.35 Total: 34.91 kcal Atomic # 7 Polarization: -156.90 SS G_CDS: -8.71 Total: -165.61 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.06 Total: -14.81 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -79.45 2.82 -76.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944152925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.054 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds