Wall clock time and date at job start Wed Apr 1 2020 03:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32443 * 125.18715 * 2 1 4 4 C 1.32869 * 109.81486 * 179.73238 * 3 2 1 5 5 N 1.33733 * 132.44435 * 180.02562 * 4 3 2 6 6 C 1.31209 * 121.19861 * 179.97438 * 5 4 3 7 7 C 1.40101 * 120.44977 * 0.02562 * 6 5 4 8 8 C 1.36997 * 119.05717 * 0.02562 * 7 6 5 9 9 C 1.47709 * 120.63492 * 179.97438 * 8 7 6 10 10 O 1.21558 * 120.00284 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99794 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00042 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.45754 * 35.00701 * 12 11 9 14 14 C 1.53032 * 109.46160 * 275.02968 * 12 11 9 15 15 C 1.53194 * 109.31051 * 178.59808 * 14 12 11 16 16 N 1.46928 * 108.76382 * 54.65807 * 15 14 12 17 17 C 1.36941 * 120.62877 * 126.39992 * 16 15 14 18 18 H 1.08001 * 120.00378 * 332.60037 * 17 16 15 19 19 C 1.38817 * 119.99860 * 152.59503 * 17 16 15 20 20 N 1.31611 * 120.00064 * 159.32616 * 19 17 16 21 21 Si 1.86805 * 119.99968 * 339.33034 * 19 17 16 22 22 H 1.48504 * 109.47091 * 92.95584 * 21 19 17 23 23 H 1.48494 * 109.46963 * 212.95768 * 21 19 17 24 24 H 1.48506 * 109.47145 * 332.95960 * 21 19 17 25 25 C 1.46919 * 118.73774 * 306.38334 * 16 15 14 26 26 C 1.53045 * 109.45974 * 154.97458 * 12 11 9 27 27 H 1.09002 * 109.49588 * 61.43464 * 26 12 11 28 28 C 1.53007 * 109.49681 * 301.37373 * 26 12 11 29 29 N 1.36688 * 107.18035 * 0.02562 * 4 3 2 30 30 N 1.31363 * 125.18236 * 179.69222 * 2 1 3 31 31 H 1.08993 * 109.47186 * 90.02471 * 1 2 3 32 32 H 1.09007 * 109.47209 * 210.02796 * 1 2 3 33 33 H 1.08999 * 109.47323 * 330.02318 * 1 2 3 34 34 H 1.07999 * 119.77656 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.46953 * 179.97438 * 7 6 5 36 36 H 0.97001 * 120.00378 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.49785 * 298.56320 * 14 12 11 38 38 H 1.08995 * 109.49539 * 58.66491 * 14 12 11 39 39 H 1.09002 * 109.60097 * 294.86813 * 15 14 12 40 40 H 1.09003 * 109.58556 * 174.43396 * 15 14 12 41 41 H 0.96998 * 120.00370 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.58826 * 293.81659 * 25 16 15 43 43 H 1.09003 * 109.70441 * 173.46694 * 25 16 15 44 44 H 1.08999 * 109.46889 * 60.00017 * 28 26 12 45 45 H 1.09003 * 109.46721 * 179.97438 * 28 26 12 46 46 H 1.08996 * 109.47169 * 299.99796 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0824 0.0000 4 6 3.5514 0.7302 0.0058 5 7 4.6832 1.4425 0.0087 6 6 5.8562 0.8547 0.0151 7 6 5.9498 -0.5432 0.0187 8 6 4.7994 -1.2871 0.0148 9 6 4.8575 -2.7631 0.0177 10 8 5.9333 -3.3290 0.0232 11 7 3.7177 -3.4823 0.0144 12 6 3.7753 -4.9462 0.0167 13 1 4.6284 -5.2751 0.6102 14 6 3.9273 -5.4528 -1.4193 15 6 4.0223 -6.9818 -1.4097 16 7 2.8557 -7.5234 -0.6993 17 6 2.0552 -8.4651 -1.2889 18 1 1.9725 -8.5065 -2.3649 19 6 1.3499 -9.3665 -0.5034 20 7 0.2978 -9.9855 -0.9955 21 14 1.8941 -9.7010 1.2520 22 1 1.1620 -8.7994 2.1775 23 1 1.5991 -11.1140 1.6009 24 1 3.3537 -9.4555 1.3731 25 6 2.5647 -7.0356 0.6557 26 6 2.4864 -5.5062 0.6230 27 1 1.6351 -5.1983 0.0158 28 6 2.3178 -4.9722 2.0469 29 7 3.5945 -0.6360 0.0091 30 7 2.2639 -1.0736 0.0058 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 6.7557 1.4524 0.0177 35 1 6.9152 -1.0274 0.0236 36 1 2.8592 -3.0308 0.0096 37 1 3.0623 -5.1455 -2.0069 38 1 4.8332 -5.0350 -1.8584 39 1 4.9355 -7.2882 -0.8994 40 1 4.0313 -7.3538 -2.4342 41 1 -0.1952 -10.6151 -0.4466 42 1 3.3589 -7.3465 1.3344 43 1 1.6128 -7.4431 0.9964 44 1 2.2648 -3.8837 2.0228 45 1 1.3995 -5.3709 2.4780 46 1 3.1687 -5.2812 2.6540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944152926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:28 Heat of formation + Delta-G solvation = 109.909013 kcal Electronic energy + Delta-G solvation = -30762.413416 eV Core-core repulsion = 26689.822445 eV Total energy + Delta-G solvation = -4072.590970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.20086 -41.49154 -40.13164 -39.33373 -36.45486 -35.90066 -34.14930 -33.70179 -33.40336 -32.07060 -31.86514 -29.90772 -27.84666 -27.53701 -26.18819 -25.22618 -24.24083 -22.75370 -22.44083 -21.97565 -21.20840 -19.87678 -19.48252 -18.93014 -18.18705 -18.04148 -17.64613 -16.88443 -16.56688 -16.30066 -16.08477 -15.61272 -15.28819 -15.02854 -14.90419 -14.75198 -14.70058 -14.61827 -14.40956 -14.21111 -13.95278 -13.60681 -13.51755 -13.33760 -13.29843 -13.08303 -12.82844 -12.63836 -12.41359 -12.13263 -12.04942 -11.96695 -11.75024 -11.59293 -11.45498 -11.37179 -11.15496 -10.79601 -10.72947 -10.33269 -10.10853 -9.00633 -8.18550 -5.51581 -1.20946 -0.51639 0.49557 1.03733 1.27990 1.40689 1.49115 1.57250 1.59682 2.09876 2.22969 2.39448 2.56877 3.00501 3.09547 3.29334 3.42244 3.52672 3.66383 3.81382 3.84166 3.93103 4.15576 4.17833 4.35092 4.44506 4.48142 4.57708 4.59846 4.64070 4.65579 4.67836 4.71822 4.77920 4.80737 4.85563 4.90031 4.98209 5.09153 5.10363 5.18439 5.22401 5.24574 5.36181 5.83534 6.07657 6.10685 6.23402 6.63666 6.75563 6.86985 7.57830 7.98054 9.01152 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003096 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.134278 B = 9042.234263 C = 9914.753313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.277 3.723 3 N -0.546 5.546 4 C 0.428 3.572 5 N -0.462 5.462 6 C 0.232 3.768 7 C -0.121 4.121 8 C 0.119 3.881 9 C 0.556 3.444 10 O -0.532 6.532 11 N -0.697 5.697 12 C 0.163 3.837 13 H 0.085 0.915 14 C -0.130 4.130 15 C 0.149 3.851 16 N -0.619 5.619 17 C -0.251 4.251 18 H 0.053 0.947 19 C -0.031 4.031 20 N -0.955 5.955 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.311 1.311 24 H -0.261 1.261 25 C 0.133 3.867 26 C -0.105 4.105 27 H 0.069 0.931 28 C -0.139 4.139 29 N -0.322 5.322 30 N -0.365 5.365 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.261 0.739 35 H 0.218 0.782 36 H 0.416 0.584 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 25.150 5.277 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.002 4.002 3 N -0.280 5.280 4 C 0.068 3.932 5 N -0.178 5.178 6 C 0.046 3.954 7 C -0.147 4.147 8 C -0.001 4.001 9 C 0.340 3.660 10 O -0.409 6.409 11 N -0.350 5.350 12 C 0.059 3.941 13 H 0.103 0.897 14 C -0.170 4.170 15 C 0.023 3.977 16 N -0.343 5.343 17 C -0.380 4.380 18 H 0.071 0.929 19 C -0.226 4.226 20 N -0.601 5.601 21 Si 0.770 3.230 22 H -0.196 1.196 23 H -0.239 1.239 24 H -0.186 1.186 25 C 0.007 3.993 26 C -0.126 4.126 27 H 0.087 0.913 28 C -0.197 4.197 29 N -0.104 5.104 30 N -0.200 5.200 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.276 0.724 35 H 0.235 0.765 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.619 25.124 5.285 27.783 hybrid contribution -0.431 -1.425 0.415 1.545 sum 10.188 23.699 5.699 26.418 Atomic orbital electron populations 1.20520 0.79877 1.06097 1.05890 1.25265 1.00029 0.83836 0.91119 1.70696 0.97291 1.29395 1.30599 1.23092 0.94408 0.78467 0.97225 1.67970 0.96185 1.36667 1.16955 1.24760 0.95593 0.91777 0.83225 1.22927 0.98701 0.95354 0.97676 1.21136 0.83328 0.93729 1.01879 1.17784 0.85038 0.85196 0.78029 1.90852 1.28611 1.70665 1.50812 1.46478 1.09608 1.07705 1.71236 1.20922 0.98671 0.77605 0.96927 0.89681 1.22245 1.01679 0.97058 0.96048 1.21021 0.88485 0.91460 0.96721 1.44500 1.29117 1.45659 1.15013 1.18851 1.19508 1.07727 0.91946 0.92915 1.25880 0.97321 0.97475 1.01969 1.69956 1.18734 1.32071 1.39297 0.85989 0.79647 0.75739 0.81625 1.19636 1.23940 1.18552 1.21399 0.99002 0.92406 0.86484 1.21787 0.96847 0.96171 0.97800 0.91263 1.21744 1.02438 1.00857 0.94622 1.48904 1.06134 1.09287 1.46074 1.77997 0.83762 1.22243 1.36000 0.87487 0.88040 0.87400 0.72360 0.76485 0.74218 0.92625 0.90742 0.94363 0.91978 0.92862 0.94604 0.92442 0.91937 0.91888 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.28 6.46 8.09 138.68 1.12 7.58 16 3 N -0.55 -14.40 11.24 -191.25 -2.15 -16.55 16 4 C 0.43 10.43 9.00 261.61 2.35 12.78 16 5 N -0.46 -8.31 10.45 -197.70 -2.07 -10.37 16 6 C 0.23 1.70 11.26 85.24 0.96 2.66 16 7 C -0.12 -1.27 9.63 22.43 0.22 -1.05 16 8 C 0.12 2.42 6.81 40.56 0.28 2.69 16 9 C 0.56 14.11 7.76 86.75 0.67 14.78 16 10 O -0.53 -15.03 16.03 -3.90 -0.06 -15.09 16 11 N -0.70 -19.04 4.36 -445.42 -1.94 -20.98 16 12 C 0.16 5.04 1.88 45.02 0.08 5.13 16 13 H 0.09 2.74 7.58 -2.39 -0.02 2.72 16 14 C -0.13 -4.31 5.65 30.67 0.17 -4.13 16 15 C 0.15 5.77 6.52 86.36 0.56 6.33 16 16 N -0.62 -28.86 2.77 -699.11 -1.94 -30.80 16 17 C -0.25 -14.16 10.04 84.03 0.84 -13.31 16 18 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 19 C -0.03 -1.82 5.23 84.86 0.44 -1.38 16 20 N -0.95 -59.66 13.97 21.65 0.30 -59.36 16 21 Si 0.94 45.87 24.35 68.60 1.67 47.54 16 22 H -0.27 -12.26 6.62 99.48 0.66 -11.60 16 23 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 24 H -0.26 -12.21 6.64 99.48 0.66 -11.55 16 25 C 0.13 5.49 3.49 86.36 0.30 5.79 16 26 C -0.11 -3.51 2.46 -10.71 -0.03 -3.53 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 C -0.14 -3.80 9.03 71.98 0.65 -3.16 16 29 N -0.32 -7.73 3.93 -187.18 -0.74 -8.46 16 30 N -0.37 -9.30 10.11 -51.45 -0.52 -9.82 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.26 -1.36 8.06 -2.91 -0.02 -1.39 16 35 H 0.22 0.99 7.66 -2.91 -0.02 0.97 16 36 H 0.42 11.37 5.40 -92.71 -0.50 10.87 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.04 1.44 7.08 -2.39 -0.02 1.43 16 43 H 0.06 2.62 4.50 -2.39 -0.01 2.61 16 44 H 0.06 1.56 7.36 -2.39 -0.02 1.54 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -79.06 370.11 2.37 -76.69 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.43 Total: 16.21 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 9.38 Total: 31.01 kcal Atomic # 7 Polarization: -147.31 SS G_CDS: -9.04 Total: -156.35 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.06 Total: -15.09 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -79.06 2.37 -76.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944152926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.596 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds