Wall clock time and date at job start Wed Apr 1 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40165 * 120.36549 * 2 1 4 4 N 1.31263 * 120.35932 * 179.97438 * 3 2 1 5 5 C 1.33986 * 120.87708 * 359.96018 * 4 3 2 6 6 N 1.32499 * 132.34455 * 180.02562 * 5 4 3 7 7 C 1.33470 * 109.75555 * 180.02562 * 6 5 4 8 8 C 1.48127 * 125.32606 * 180.02562 * 7 6 5 9 9 O 1.21522 * 120.00185 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99881 * 0.02641 * 8 7 6 11 11 C 1.46499 * 120.00116 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.50031 * 324.93498 * 11 10 8 13 13 C 1.53195 * 109.49640 * 85.00043 * 11 10 8 14 14 N 1.46918 * 108.77951 * 65.34840 * 13 11 10 15 15 C 1.36939 * 120.63484 * 233.58669 * 14 13 11 16 16 H 1.08004 * 120.00151 * 152.62926 * 15 14 13 17 17 C 1.38813 * 119.99897 * 332.63459 * 15 14 13 18 18 N 1.31621 * 119.99798 * 159.34852 * 17 15 14 19 19 Si 1.86794 * 119.99845 * 339.34643 * 17 15 14 20 20 H 1.48509 * 109.47188 * 92.87625 * 19 17 15 21 21 H 1.48493 * 109.47181 * 212.87551 * 19 17 15 22 22 H 1.48496 * 109.47502 * 332.88086 * 19 17 15 23 23 C 1.46934 * 118.73784 * 53.60629 * 14 13 11 24 24 C 1.53186 * 108.77543 * 306.39390 * 23 14 13 25 25 C 1.53039 * 109.52537 * 204.85073 * 11 10 8 26 26 H 1.09005 * 109.45787 * 181.37586 * 25 11 10 27 27 C 1.52998 * 109.45891 * 61.41954 * 25 11 10 28 28 N 1.31988 * 109.35140 * 0.26328 * 7 6 5 29 29 N 1.36870 * 120.22366 * 0.03179 * 5 4 3 30 30 C 1.35686 * 120.36038 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47346 * 270.02885 * 1 2 3 32 32 H 1.09001 * 109.47183 * 30.02257 * 1 2 3 33 33 H 1.09003 * 109.47355 * 150.02426 * 1 2 3 34 34 H 1.08001 * 119.82378 * 359.97304 * 3 2 1 35 35 H 0.97006 * 120.00111 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.58711 * 305.55974 * 13 11 10 37 37 H 1.08997 * 109.58602 * 185.13824 * 13 11 10 38 38 H 0.97001 * 119.99197 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.58853 * 186.60718 * 23 14 13 40 40 H 1.09005 * 109.69974 * 66.24873 * 23 14 13 41 41 H 1.09004 * 109.49873 * 174.57996 * 24 23 14 42 42 H 1.08993 * 109.50297 * 294.68323 * 24 23 14 43 43 H 1.08995 * 109.47177 * 299.93207 * 27 25 11 44 44 H 1.09008 * 109.47178 * 59.93044 * 27 25 11 45 45 H 1.09000 * 109.47334 * 179.97438 * 27 25 11 46 46 H 1.07990 * 120.48852 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2094 0.0000 4 7 3.5282 1.2092 0.0005 5 6 4.2157 0.0592 0.0018 6 7 5.5142 -0.2044 0.0030 7 6 5.7064 -1.5251 0.0035 8 6 7.0257 -2.1986 0.0054 9 8 7.0884 -3.4122 0.0052 10 7 8.1566 -1.4655 0.0072 11 6 9.4614 -2.1315 0.0096 12 1 9.4021 -3.0459 0.5999 13 6 9.8621 -2.4763 -1.4282 14 7 10.0641 -1.2274 -2.1753 15 6 9.4070 -1.0066 -3.3562 16 1 9.1912 0.0029 -3.6737 17 6 9.0180 -2.0804 -4.1453 18 7 8.0629 -1.9290 -5.0382 19 14 9.8501 -3.7401 -3.9400 20 1 9.0770 -4.5658 -2.9777 21 1 9.9056 -4.4318 -5.2528 22 1 11.2291 -3.5423 -3.4260 23 6 10.9851 -0.2200 -1.6315 24 6 10.5718 0.0995 -0.1914 25 6 10.5110 -1.1982 0.6175 26 1 11.4859 -1.6854 0.5964 27 6 10.1321 -0.8792 2.0651 28 7 4.5371 -2.1373 -0.0031 29 7 3.5541 -1.1390 0.0020 30 6 2.1928 -1.1708 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6786 2.1465 -0.0004 35 1 8.1066 -0.4967 0.0070 36 1 9.0702 -3.0593 -1.8985 37 1 10.7877 -3.0519 -1.4216 38 1 7.7914 -2.6793 -5.5898 39 1 10.9342 0.6858 -2.2357 40 1 12.0032 -0.6093 -1.6416 41 1 11.3029 0.7731 0.2560 42 1 9.5909 0.5746 -0.1912 43 1 9.1576 -0.3916 2.0866 44 1 10.0887 -1.8035 2.6414 45 1 10.8798 -0.2149 2.4984 46 1 1.6668 -2.1139 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966896611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:33 Heat of formation + Delta-G solvation = 104.674068 kcal Electronic energy + Delta-G solvation = -30871.118095 eV Core-core repulsion = 26798.300120 eV Total energy + Delta-G solvation = -4072.817975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.17938 -41.45503 -40.14578 -39.18160 -36.14153 -35.87754 -34.62006 -34.04273 -33.32824 -32.11414 -31.36395 -29.25327 -28.37325 -26.54947 -25.74590 -25.25566 -24.01565 -23.96129 -22.86215 -21.83704 -20.47530 -19.99052 -19.23135 -18.72401 -18.55855 -18.02005 -17.32399 -16.99409 -16.69518 -16.24271 -16.01336 -15.37309 -15.17726 -15.15788 -15.08573 -14.94145 -14.55741 -14.37879 -14.37434 -13.85040 -13.79018 -13.67650 -13.62501 -13.20376 -13.07096 -12.93958 -12.88413 -12.56327 -12.43044 -12.22385 -11.88289 -11.76103 -11.70687 -11.59131 -11.35803 -11.16449 -11.14941 -10.88508 -10.79248 -10.22117 -9.92013 -8.91141 -8.21296 -5.49832 -0.80286 -0.57410 0.52003 0.54395 1.27725 1.29833 1.39693 1.60384 1.90916 2.12903 2.25602 2.37797 2.82858 3.00537 3.20600 3.33565 3.33851 3.70273 3.72453 3.90294 3.91387 3.99309 4.14547 4.28374 4.41291 4.46840 4.59898 4.61352 4.68353 4.74961 4.80943 4.82076 4.87263 4.94641 4.98180 5.00962 5.05045 5.09957 5.17515 5.18974 5.34529 5.40619 5.41487 5.55135 5.84049 6.07243 6.09579 6.25206 6.52796 6.87402 6.89561 7.60578 8.00377 8.98597 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.003703 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.865277 B = 7559.961917 C = 8514.633896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.148 4.148 3 C 0.223 3.777 4 N -0.475 5.475 5 C 0.419 3.581 6 N -0.525 5.525 7 C 0.228 3.772 8 C 0.604 3.396 9 O -0.552 6.552 10 N -0.660 5.660 11 C 0.134 3.866 12 H 0.090 0.910 13 C 0.109 3.891 14 N -0.612 5.612 15 C -0.232 4.232 16 H 0.053 0.947 17 C -0.035 4.035 18 N -0.958 5.958 19 Si 0.935 3.065 20 H -0.296 1.296 21 H -0.310 1.310 22 H -0.246 1.246 23 C 0.139 3.861 24 C -0.123 4.123 25 C -0.084 4.084 26 H 0.105 0.895 27 C -0.139 4.139 28 N -0.302 5.302 29 N -0.325 5.325 30 C 0.131 3.869 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.414 0.586 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 8.049 17.877 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.039 3.961 4 N -0.191 5.191 5 C 0.060 3.940 6 N -0.260 5.260 7 C -0.055 4.055 8 C 0.385 3.615 9 O -0.429 6.429 10 N -0.310 5.310 11 C 0.028 3.972 12 H 0.108 0.892 13 C -0.018 4.018 14 N -0.336 5.336 15 C -0.362 4.362 16 H 0.071 0.929 17 C -0.229 4.229 18 N -0.605 5.605 19 Si 0.765 3.235 20 H -0.224 1.224 21 H -0.239 1.239 22 H -0.169 1.169 23 C 0.015 3.985 24 C -0.162 4.162 25 C -0.103 4.103 26 H 0.123 0.877 27 C -0.196 4.196 28 N -0.137 5.137 29 N -0.105 5.105 30 C -0.003 4.003 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.263 0.737 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.761 7.237 17.761 23.036 hybrid contribution -0.471 -1.429 -0.940 1.775 sum -13.232 5.808 16.821 22.176 Atomic orbital electron populations 1.20866 0.82910 1.06170 1.05296 1.21290 1.01529 0.90252 1.02457 1.24751 0.86495 1.01659 0.83183 1.68228 1.11115 1.20852 1.18878 1.22869 0.89177 0.84151 0.97842 1.70649 1.13146 1.13457 1.28776 1.23987 0.94906 0.88299 0.98357 1.16531 0.81854 0.85634 0.77523 1.90765 1.86706 1.13765 1.51638 1.45574 1.04182 1.11011 1.70280 1.21749 0.81641 0.97123 0.96666 0.89189 1.21792 0.98433 0.89168 0.92372 1.44394 1.50121 1.17549 1.21583 1.18796 1.28290 0.92875 0.96204 0.92911 1.25821 0.98959 1.01079 0.97063 1.69979 1.30311 1.32416 1.27789 0.86075 0.80963 0.81576 0.74919 1.22445 1.23939 1.16938 1.21220 0.91935 0.91563 0.93768 1.22022 1.01939 0.96957 0.95305 1.21338 0.97849 0.95603 0.95508 0.87737 1.21790 1.01721 1.02083 0.93993 1.78713 0.95734 1.08821 1.30470 1.49018 1.08337 1.07592 1.45587 1.22972 0.77367 1.04475 0.95498 0.87901 0.87339 0.89499 0.73670 0.74751 0.94500 0.93091 0.93518 0.92527 0.93664 0.87975 0.93321 0.93764 0.92331 0.89908 0.77186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.07 10.03 71.24 0.71 0.78 16 2 C -0.15 -1.44 5.87 -19.99 -0.12 -1.56 16 3 C 0.22 2.79 10.96 85.25 0.93 3.72 16 4 N -0.48 -12.59 10.48 -197.54 -2.07 -14.66 16 5 C 0.42 14.77 8.99 261.57 2.35 17.12 16 6 N -0.52 -22.06 10.89 -192.62 -2.10 -24.16 16 7 C 0.23 10.16 7.92 137.40 1.09 11.25 16 8 C 0.60 27.98 7.81 86.87 0.68 28.66 16 9 O -0.55 -28.34 16.74 -3.79 -0.06 -28.40 16 10 N -0.66 -26.85 4.25 -444.77 -1.89 -28.74 16 11 C 0.13 4.97 2.24 45.07 0.10 5.07 16 12 H 0.09 3.29 7.58 -2.39 -0.02 3.27 16 13 C 0.11 4.99 3.80 86.36 0.33 5.31 16 14 N -0.61 -29.38 2.69 -699.08 -1.88 -31.26 16 15 C -0.23 -13.75 10.04 84.03 0.84 -12.91 16 16 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 17 C -0.03 -2.20 5.23 84.86 0.44 -1.76 16 18 N -0.96 -64.87 13.97 21.65 0.30 -64.57 16 19 Si 0.93 51.16 24.34 68.60 1.67 52.83 16 20 H -0.30 -16.69 6.62 99.48 0.66 -16.04 16 21 H -0.31 -17.09 7.11 99.48 0.71 -16.38 16 22 H -0.25 -12.28 6.64 99.48 0.66 -11.62 16 23 C 0.14 5.12 6.52 86.36 0.56 5.68 16 24 C -0.12 -3.51 5.20 30.67 0.16 -3.35 16 25 C -0.08 -2.29 2.48 -10.77 -0.03 -2.31 16 26 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 27 C -0.14 -3.06 9.05 71.98 0.65 -2.41 16 28 N -0.30 -12.58 12.78 -52.60 -0.67 -13.26 16 29 N -0.33 -10.46 3.91 -197.59 -0.77 -11.23 16 30 C 0.13 2.37 10.97 83.43 0.92 3.28 16 31 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.11 -0.48 8.10 -2.39 -0.02 -0.50 16 33 H 0.09 -0.10 8.09 -2.39 -0.02 -0.12 16 34 H 0.25 0.12 8.06 -2.91 -0.02 0.09 16 35 H 0.41 16.30 6.31 -92.70 -0.59 15.71 16 36 H 0.04 2.04 4.50 -2.38 -0.01 2.03 16 37 H 0.05 2.19 7.08 -2.39 -0.02 2.17 16 38 H 0.26 16.71 8.31 -92.71 -0.77 15.94 16 39 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.54 6.40 -2.39 -0.02 1.53 16 43 H 0.04 1.08 7.54 -2.39 -0.02 1.06 16 44 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.21 2.35 8.06 -2.92 -0.02 2.33 16 Total: -1.00 -96.01 372.36 2.50 -93.52 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.35 Total: 13.35 kcal Atomic # 6 Polarization: 46.96 SS G_CDS: 9.63 Total: 56.59 kcal Atomic # 7 Polarization: -178.80 SS G_CDS: -9.08 Total: -187.88 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.06 Total: -28.40 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.67 Total: 52.83 kcal Total: -96.01 2.50 -93.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966896611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.191 kcal (2) G-P(sol) polarization free energy of solvation -96.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds