Wall clock time and date at job start Wed Apr 1 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32449 * 125.18225 * 2 1 4 4 C 1.32874 * 109.80525 * 179.97438 * 3 2 1 5 5 N 1.33745 * 132.43866 * 180.02562 * 4 3 2 6 6 C 1.31199 * 121.19544 * 180.02562 * 5 4 3 7 7 C 1.40103 * 120.45359 * 359.94048 * 6 5 4 8 8 C 1.36991 * 119.05481 * 0.02998 * 7 6 5 9 9 C 1.47711 * 120.63806 * 180.02562 * 8 7 6 10 10 O 1.21559 * 119.99929 * 359.97328 * 9 8 7 11 11 N 1.34781 * 120.00154 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99994 * 179.97438 * 11 9 8 13 13 H 1.09008 * 109.47067 * 325.00114 * 12 11 9 14 14 C 1.53005 * 109.47132 * 85.00181 * 12 11 9 15 15 C 1.52998 * 109.46793 * 59.99777 * 14 12 11 16 16 C 1.52995 * 109.47149 * 60.00369 * 15 14 12 17 17 C 1.53005 * 109.46972 * 299.99522 * 16 15 14 18 18 H 1.08996 * 109.47036 * 300.00030 * 17 16 15 19 19 N 1.46507 * 109.46907 * 180.02562 * 17 16 15 20 20 C 1.36935 * 120.00023 * 85.00140 * 19 17 16 21 21 H 1.08001 * 119.99983 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00257 * 179.97438 * 20 19 17 23 23 N 1.31616 * 119.99791 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47217 * 60.00001 * 24 22 20 26 26 H 1.48498 * 109.46941 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46781 * 300.00048 * 24 22 20 28 28 C 1.53001 * 109.47122 * 60.00418 * 17 16 15 29 29 N 1.36684 * 107.18411 * 0.02562 * 4 3 2 30 30 N 1.31356 * 125.18556 * 179.69460 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.02388 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02488 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.02469 * 1 2 3 34 34 H 1.08001 * 119.77577 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.47016 * 180.02562 * 7 6 5 36 36 H 0.96998 * 119.99831 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47036 * 180.02562 * 14 12 11 38 38 H 1.09004 * 109.46725 * 300.00250 * 14 12 11 39 39 H 1.08997 * 109.46836 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.47517 * 299.99935 * 15 14 12 41 41 H 1.09001 * 109.47602 * 59.99754 * 16 15 14 42 42 H 1.08999 * 109.47250 * 180.02562 * 16 15 14 43 43 H 0.96994 * 119.99811 * 264.99689 * 19 17 16 44 44 H 0.96997 * 120.00490 * 179.97438 * 23 22 20 45 45 H 1.08999 * 109.46733 * 180.02562 * 28 17 16 46 46 H 1.08996 * 109.47334 * 59.99350 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0825 0.0000 4 6 3.5513 0.7302 0.0006 5 7 4.6833 1.4426 0.0012 6 6 5.8562 0.8547 0.0012 7 6 5.9499 -0.5432 0.0017 8 6 4.7995 -1.2870 0.0016 9 6 4.8575 -2.7630 0.0027 10 8 5.9333 -3.3290 0.0032 11 7 3.7176 -3.4823 0.0031 12 6 3.7752 -4.9462 0.0036 13 1 4.6306 -5.2764 -0.5858 14 6 3.9210 -5.4503 1.4408 15 6 2.7204 -4.9868 2.2681 16 6 1.4340 -5.5480 1.6589 17 6 1.2882 -5.0438 0.2217 18 1 1.2454 -3.9547 0.2213 19 7 0.0561 -5.5807 -0.3615 20 6 -1.1357 -4.9388 -0.1546 21 1 -1.1674 -4.0370 0.4388 22 6 -2.3030 -5.4472 -0.7076 23 7 -2.2644 -6.5465 -1.4304 24 14 -3.9286 -4.5712 -0.4260 25 1 -3.8471 -3.1906 -0.9668 26 1 -5.0155 -5.3106 -1.1168 27 1 -4.2156 -4.5164 1.0300 28 6 2.4888 -5.5074 -0.6057 29 7 3.5944 -0.6360 0.0003 30 7 2.2639 -1.0735 0.0057 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 0.8902 0.5135 33 1 -0.3633 -0.8898 0.5142 34 1 6.7557 1.4524 0.0013 35 1 6.9153 -1.0274 0.0021 36 1 2.8592 -3.0306 0.0031 37 1 3.9643 -6.5394 1.4412 38 1 4.8375 -5.0505 1.8749 39 1 2.8245 -5.3456 3.2921 40 1 2.6775 -3.8977 2.2678 41 1 1.4768 -6.6372 1.6593 42 1 0.5786 -5.2174 2.2480 43 1 0.0846 -6.3908 -0.8942 44 1 -3.0801 -6.9020 -1.8165 45 1 2.3851 -5.1478 -1.6294 46 1 2.5317 -6.5965 -0.6052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981457021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:10 Heat of formation + Delta-G solvation = 110.289849 kcal Electronic energy + Delta-G solvation = -31052.441450 eV Core-core repulsion = 26979.866994 eV Total energy + Delta-G solvation = -4072.574456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.27203 -40.45068 -39.18166 -38.02906 -35.09664 -34.56502 -33.09117 -32.52816 -31.19414 -31.08130 -29.84354 -29.01072 -27.93988 -25.83222 -24.41517 -23.74364 -22.39314 -21.89155 -21.07533 -21.03738 -19.27231 -18.70651 -18.54507 -17.53160 -17.10611 -17.05581 -15.95151 -15.68568 -15.52797 -15.05318 -14.50037 -14.42188 -14.00798 -13.97650 -13.81397 -13.73084 -13.53264 -13.11151 -12.99284 -12.73128 -12.55372 -12.47487 -12.16991 -12.01546 -11.89859 -11.81605 -11.04063 -10.91721 -10.88706 -10.83406 -10.46826 -10.45650 -10.25183 -10.24396 -10.18595 -9.88269 -9.79340 -9.57671 -9.26299 -9.08493 -8.89216 -6.99439 -5.79247 -3.08158 -0.38797 0.31283 1.40203 1.98272 2.60125 2.61029 2.90376 3.09423 3.40706 3.45271 3.46829 3.51650 4.00722 4.24248 4.34194 4.54003 4.67539 4.83506 4.92613 4.98232 5.08270 5.23170 5.42391 5.44755 5.49814 5.50814 5.61760 5.63680 5.68121 5.69981 5.77751 5.89360 5.90724 5.98018 6.01104 6.11525 6.14650 6.22378 6.40614 6.46275 6.51962 6.65340 6.90416 6.95351 7.04224 7.30328 7.60808 7.66193 7.84978 8.38921 9.50108 10.07036 10.42218 11.43375 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004059 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.143107 B = 6896.302366 C = 8926.054386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.291 3.709 3 N -0.515 5.515 4 C 0.441 3.559 5 N -0.440 5.440 6 C 0.205 3.795 7 C -0.159 4.159 8 C 0.155 3.845 9 C 0.554 3.446 10 O -0.520 6.520 11 N -0.691 5.691 12 C 0.147 3.853 13 H 0.089 0.911 14 C -0.127 4.127 15 C -0.117 4.117 16 C -0.136 4.136 17 C 0.178 3.822 18 H 0.046 0.954 19 N -0.723 5.723 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.135 4.135 29 N -0.318 5.318 30 N -0.333 5.333 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.200 0.800 35 H 0.187 0.813 36 H 0.421 0.579 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.069 0.931 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.545 11.223 4.028 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.011 3.989 3 N -0.248 5.248 4 C 0.080 3.920 5 N -0.154 5.154 6 C 0.018 3.982 7 C -0.185 4.185 8 C 0.034 3.966 9 C 0.336 3.664 10 O -0.396 6.396 11 N -0.347 5.347 12 C 0.042 3.958 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.068 3.932 18 H 0.064 0.936 19 N -0.363 5.363 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.173 4.173 29 N -0.100 5.100 30 N -0.166 5.166 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.217 0.783 35 H 0.204 0.796 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.192 11.420 4.046 21.032 hybrid contribution -0.957 -0.400 -0.009 1.038 sum 16.235 11.019 4.037 20.032 Atomic orbital electron populations 1.20406 0.81895 1.05354 1.05247 1.24673 0.98791 0.84157 0.91268 1.70754 0.96412 1.28492 1.29119 1.22780 0.93767 0.78232 0.97193 1.67805 0.95713 1.36426 1.15504 1.23676 0.95254 0.91909 0.87390 1.22295 0.98810 0.94852 1.02524 1.21057 0.82616 0.94686 0.98271 1.17568 0.85651 0.84330 0.78863 1.90838 1.28333 1.70009 1.50460 1.46610 1.09463 1.08318 1.70330 1.21164 0.99630 0.77674 0.97290 0.89299 1.21907 0.98572 1.01315 0.94747 1.21518 0.95306 1.00282 0.98417 1.22285 0.95660 1.00575 0.99143 1.20170 0.86065 0.96478 0.90463 0.93614 1.42384 1.01909 1.30837 1.61194 1.19157 0.85208 1.06006 1.26457 0.91290 1.24721 0.97768 0.97826 1.00498 1.69641 1.27386 1.22454 1.38649 0.86320 0.83812 0.78810 0.77574 1.21159 1.21750 1.21292 1.22147 0.93447 1.01623 1.00100 1.49032 1.06205 1.09257 1.45460 1.78212 0.82874 1.21138 1.34371 0.88397 0.88730 0.88303 0.78337 0.79565 0.73503 0.90574 0.92012 0.92622 0.92922 0.92417 0.91961 0.78278 0.93475 0.91183 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.51 36.01 0.38 -0.43 16 2 C 0.29 4.26 8.09 -157.00 -1.27 2.99 16 3 N -0.52 -7.94 11.24 -11.80 -0.13 -8.07 16 4 C 0.44 6.30 9.00 -323.14 -2.91 3.39 16 5 N -0.44 -5.03 10.45 -13.84 -0.14 -5.18 16 6 C 0.20 1.38 11.26 -17.12 -0.19 1.19 16 7 C -0.16 -1.24 9.63 -39.33 -0.38 -1.62 16 8 C 0.16 1.87 6.81 -82.15 -0.56 1.31 16 9 C 0.55 7.56 7.76 -12.39 -0.10 7.46 16 10 O -0.52 -7.55 16.03 5.31 0.09 -7.47 16 11 N -0.69 -9.99 4.23 -54.78 -0.23 -10.22 16 12 C 0.15 2.06 2.78 -67.92 -0.19 1.87 16 13 H 0.09 1.21 7.58 -51.92 -0.39 0.81 16 14 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 15 C -0.12 -1.68 5.76 -26.73 -0.15 -1.83 16 16 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 17 C 0.18 3.38 2.60 -67.92 -0.18 3.20 16 18 H 0.05 0.91 6.44 -51.93 -0.33 0.58 16 19 N -0.72 -17.33 5.12 -53.42 -0.27 -17.60 16 20 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 24 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C -0.13 -2.15 5.08 -26.73 -0.14 -2.28 16 29 N -0.32 -4.47 3.93 -10.51 -0.04 -4.51 16 30 N -0.33 -5.14 10.11 32.39 0.33 -4.81 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.20 0.28 8.06 -52.49 -0.42 -0.14 16 35 H 0.19 0.95 7.66 -52.48 -0.40 0.55 16 36 H 0.42 6.57 3.96 -40.82 -0.16 6.41 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.79 7.60 -51.93 -0.39 0.40 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -33.66 377.51 -11.45 -45.10 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.20 Total: 13.14 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -6.22 Total: 4.02 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: 0.23 Total: -77.17 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.66 -11.45 -45.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981457021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.394 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds