Wall clock time and date at job start Wed Apr 1 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40169 * 120.36659 * 2 1 4 4 N 1.31256 * 120.36015 * 180.02562 * 3 2 1 5 5 C 1.33985 * 120.87985 * 359.97438 * 4 3 2 6 6 N 1.32499 * 132.35043 * 179.97438 * 5 4 3 7 7 C 1.33465 * 109.75731 * 180.02562 * 6 5 4 8 8 C 1.48125 * 125.32235 * 179.97438 * 7 6 5 9 9 O 1.21520 * 120.00411 * 180.02562 * 8 7 6 10 10 N 1.34788 * 120.00176 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00063 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.49955 * 35.00046 * 11 10 8 13 13 C 1.53034 * 109.49800 * 274.93622 * 11 10 8 14 14 C 1.53044 * 109.53735 * 178.71956 * 13 11 10 15 15 C 1.53191 * 109.34247 * 61.31267 * 14 13 11 16 16 N 1.46918 * 108.77510 * 305.38084 * 15 14 13 17 17 C 1.36937 * 120.63034 * 233.62818 * 16 15 14 18 18 H 1.08000 * 119.99599 * 150.13810 * 17 16 15 19 19 C 1.38806 * 120.00232 * 330.14217 * 17 16 15 20 20 N 1.31618 * 119.99848 * 344.50729 * 19 17 16 21 21 Si 1.86797 * 120.00329 * 164.50843 * 19 17 16 22 22 H 1.48502 * 109.47280 * 59.99756 * 21 19 17 23 23 H 1.48496 * 109.47541 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46799 * 299.99851 * 21 19 17 25 25 C 1.46924 * 118.73882 * 53.60893 * 16 15 14 26 26 H 1.08998 * 109.70535 * 66.24964 * 25 16 15 27 27 C 1.53004 * 109.58898 * 186.60243 * 25 16 15 28 28 N 1.31984 * 109.35517 * 359.97438 * 7 6 5 29 29 N 1.36875 * 120.22228 * 0.02562 * 5 4 3 30 30 C 1.35678 * 120.35990 * 179.72533 * 2 1 3 31 31 H 1.08994 * 109.46955 * 90.00214 * 1 2 3 32 32 H 1.09000 * 109.46491 * 329.99921 * 1 2 3 33 33 H 1.09000 * 109.46952 * 210.00216 * 1 2 3 34 34 H 1.08002 * 119.81653 * 359.97438 * 3 2 1 35 35 H 0.96998 * 119.99639 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46200 * 298.69821 * 13 11 10 37 37 H 1.08996 * 109.46688 * 58.66701 * 13 11 10 38 38 H 1.08994 * 109.46975 * 301.35752 * 14 13 11 39 39 H 1.09007 * 109.52109 * 181.30034 * 14 13 11 40 40 H 1.09006 * 109.58518 * 185.59049 * 15 14 13 41 41 H 1.09000 * 109.58456 * 65.16844 * 15 14 13 42 42 H 0.97004 * 120.00391 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47122 * 179.28606 * 27 25 16 44 44 H 1.08997 * 109.46942 * 299.29359 * 27 25 16 45 45 H 1.09007 * 109.46929 * 59.28768 * 27 25 16 46 46 H 1.08001 * 120.48979 * 359.97257 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2094 0.0000 4 7 3.5282 1.2092 -0.0005 5 6 4.2158 0.0592 -0.0005 6 7 5.5143 -0.2044 -0.0014 7 6 5.7065 -1.5251 -0.0015 8 6 7.0258 -2.1986 -0.0029 9 8 7.0886 -3.4122 -0.0034 10 7 8.1568 -1.4653 -0.0037 11 6 9.4616 -2.1314 -0.0046 12 1 9.4025 -3.0465 -0.5939 13 6 9.8610 -2.4741 1.4324 14 6 11.2092 -3.1985 1.4299 15 6 12.2793 -2.2768 0.8366 16 7 11.8337 -1.8269 -0.4892 17 6 12.6349 -1.9914 -1.5875 18 1 12.1923 -2.1273 -2.5632 19 6 14.0158 -1.9835 -1.4467 20 7 14.5620 -1.5224 -0.3415 21 14 15.0989 -2.6271 -2.8258 22 1 14.8592 -1.8310 -4.0562 23 1 16.5255 -2.5105 -2.4303 24 1 14.7731 -4.0523 -3.0869 25 6 10.5119 -1.1977 -0.6142 26 1 10.5065 -0.2456 -0.0836 27 6 10.1934 -0.9628 -2.0922 28 7 4.5372 -2.1373 -0.0002 29 7 3.5542 -1.1390 -0.0005 30 6 2.1928 -1.1707 0.0056 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3632 0.8900 0.5139 33 1 -0.3633 -0.8900 0.5139 34 1 1.6787 2.1464 -0.0004 35 1 8.1067 -0.4967 -0.0038 36 1 9.9436 -1.5566 2.0150 37 1 9.1027 -3.1190 1.8762 38 1 11.1341 -4.1038 0.8276 39 1 11.4825 -3.4629 2.4515 40 1 13.2186 -2.8216 0.7410 41 1 12.4197 -1.4137 1.4872 42 1 15.5270 -1.5165 -0.2432 43 1 9.2072 -0.5076 -2.1834 44 1 10.9418 -0.2983 -2.5240 45 1 10.2043 -1.9153 -2.6220 46 1 1.6668 -2.1139 0.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993472090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:40 Heat of formation + Delta-G solvation = 103.975016 kcal Electronic energy + Delta-G solvation = -29689.494662 eV Core-core repulsion = 25616.646374 eV Total energy + Delta-G solvation = -4072.848288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.18040 -41.33967 -40.06707 -39.16329 -36.11641 -35.82859 -34.42853 -34.03277 -33.42099 -32.10921 -31.15117 -28.66764 -27.78326 -26.91711 -26.41139 -25.20509 -23.99907 -23.47222 -22.35823 -21.63932 -21.08164 -19.89179 -19.20320 -18.48709 -18.20354 -18.01007 -17.36738 -16.84906 -16.62424 -16.24361 -15.75424 -15.60491 -15.31219 -15.13134 -14.96314 -14.66967 -14.44014 -14.37227 -14.29786 -13.77217 -13.61503 -13.36652 -13.29042 -13.05213 -12.92425 -12.78906 -12.72632 -12.55243 -12.41145 -12.03247 -11.93746 -11.82180 -11.74354 -11.70458 -11.48172 -11.17076 -11.12416 -10.86950 -10.51509 -10.21549 -9.91181 -8.64788 -7.84595 -5.31169 -0.79643 -0.57495 0.51361 0.51989 1.47894 1.50798 1.55334 1.58272 1.86625 2.09756 2.24529 2.52976 2.81761 3.17842 3.30814 3.34632 3.63054 3.73653 3.83373 3.92110 3.97459 4.16522 4.17971 4.34505 4.41813 4.46531 4.59746 4.70238 4.75620 4.81931 4.87021 4.89464 4.95631 4.98068 5.01197 5.06576 5.10002 5.13159 5.22946 5.36925 5.42101 5.43390 5.56063 5.71806 5.76601 6.07028 6.24642 6.42682 6.52745 6.83960 7.17405 7.86158 8.38839 9.22504 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.002172 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.618074 B =12886.979263 C =13215.113345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.148 4.148 3 C 0.225 3.775 4 N -0.477 5.477 5 C 0.421 3.579 6 N -0.525 5.525 7 C 0.229 3.771 8 C 0.611 3.389 9 O -0.543 6.543 10 N -0.677 5.677 11 C 0.146 3.854 12 H 0.070 0.930 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.175 3.825 16 N -0.597 5.597 17 C -0.255 4.255 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.165 3.835 26 H 0.034 0.966 27 C -0.129 4.129 28 N -0.296 5.296 29 N -0.324 5.324 30 C 0.134 3.866 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.244 0.756 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.005 0.995 42 H 0.249 0.751 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.222 6.331 2.446 34.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.041 3.959 4 N -0.192 5.192 5 C 0.061 3.939 6 N -0.260 5.260 7 C -0.055 4.055 8 C 0.392 3.608 9 O -0.417 6.417 10 N -0.328 5.328 11 C 0.040 3.960 12 H 0.089 0.911 13 C -0.150 4.150 14 C -0.167 4.167 15 C 0.049 3.951 16 N -0.321 5.321 17 C -0.385 4.385 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.208 1.208 25 C 0.058 3.942 26 H 0.052 0.948 27 C -0.187 4.187 28 N -0.132 5.132 29 N -0.104 5.104 30 C 0.001 3.999 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.260 0.740 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -32.923 5.569 2.458 33.481 hybrid contribution 0.722 -0.606 -0.513 1.073 sum -32.201 4.964 1.945 32.640 Atomic orbital electron populations 1.20872 0.83224 1.06250 1.05147 1.21253 1.01386 0.90372 1.02456 1.24706 0.86564 1.01593 0.83083 1.68242 1.11021 1.21017 1.18909 1.22858 0.89199 0.84041 0.97776 1.70688 1.12963 1.13389 1.29009 1.23870 0.94627 0.88178 0.98778 1.16446 0.81382 0.85536 0.77450 1.90820 1.86523 1.13725 1.50667 1.45706 1.04242 1.11265 1.71554 1.21587 0.80327 0.96631 0.97470 0.91144 1.21721 0.97099 1.00614 0.95615 1.22020 0.95162 0.98745 1.00797 1.20665 0.95451 0.94287 0.84655 1.44241 1.14343 1.68363 1.05168 1.19398 0.87546 1.42489 0.89072 0.91031 1.25788 0.98500 1.00622 0.99439 1.70163 1.09899 1.49068 1.28655 0.85414 0.77525 0.78514 0.79412 1.20104 1.22110 1.20776 1.20676 0.84923 0.92890 0.95670 0.94822 1.21741 1.00485 1.01185 0.95246 1.78769 0.95622 1.08629 1.30183 1.49035 1.08294 1.07610 1.45502 1.22946 0.77404 1.04343 0.95256 0.88330 0.87384 0.89273 0.74016 0.74461 0.91444 0.92314 0.93270 0.90543 0.92476 0.97661 0.94179 0.91447 0.92879 0.93579 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.58 10.03 71.24 0.71 1.29 16 2 C -0.15 -0.47 5.87 -19.99 -0.12 -0.59 16 3 C 0.22 1.34 10.96 85.25 0.93 2.28 16 4 N -0.48 -9.02 10.48 -197.54 -2.07 -11.09 16 5 C 0.42 11.04 8.99 261.57 2.35 13.39 16 6 N -0.52 -16.72 10.89 -192.63 -2.10 -18.82 16 7 C 0.23 7.75 7.92 137.40 1.09 8.83 16 8 C 0.61 22.29 7.81 86.87 0.68 22.97 16 9 O -0.54 -22.93 16.73 -3.78 -0.06 -22.99 16 10 N -0.68 -22.88 4.57 -444.77 -2.03 -24.91 16 11 C 0.15 5.56 1.99 45.07 0.09 5.65 16 12 H 0.07 3.03 7.58 -2.38 -0.02 3.01 16 13 C -0.11 -4.13 5.46 30.62 0.17 -3.96 16 14 C -0.13 -5.12 6.08 30.67 0.19 -4.93 16 15 C 0.17 8.57 5.28 86.36 0.46 9.02 16 16 N -0.60 -30.09 2.99 -675.25 -2.02 -32.11 16 17 C -0.25 -13.93 8.58 84.03 0.72 -13.21 16 18 H 0.07 3.82 6.23 -2.91 -0.02 3.80 16 19 C -0.05 -2.69 4.94 84.86 0.42 -2.27 16 20 N -0.93 -55.15 11.23 21.65 0.24 -54.91 16 21 Si 0.96 45.53 29.58 68.60 2.03 47.56 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 C 0.17 6.94 3.03 44.98 0.14 7.08 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 C -0.13 -5.02 7.84 71.98 0.56 -4.46 16 28 N -0.30 -9.36 12.78 -52.61 -0.67 -10.03 16 29 N -0.32 -7.51 3.91 -197.58 -0.77 -8.29 16 30 C 0.13 1.41 10.97 83.43 0.91 2.32 16 31 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.11 -1.03 8.10 -2.39 -0.02 -1.05 16 33 H 0.09 -0.61 8.08 -2.39 -0.02 -0.63 16 34 H 0.24 -1.22 8.06 -2.91 -0.02 -1.24 16 35 H 0.42 12.84 8.28 -92.71 -0.77 12.08 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.06 3.14 6.15 -2.38 -0.01 3.13 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.07 2.22 7.78 -2.39 -0.02 2.21 16 44 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 45 H 0.05 1.86 7.40 -2.38 -0.02 1.84 16 46 H 0.21 0.81 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -82.10 378.91 2.11 -79.99 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.26 Total: 12.20 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 9.30 Total: 43.40 kcal Atomic # 7 Polarization: -150.74 SS G_CDS: -9.42 Total: -160.16 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -82.10 2.11 -79.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993472090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.965 kcal (2) G-P(sol) polarization free energy of solvation -82.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds