Wall clock time and date at job start Wed Apr 1 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.32453 * 125.18190 * 2 1 4 4 C 1.32868 * 109.80676 * 180.02562 * 3 2 1 5 5 N 1.33739 * 132.43457 * 180.02562 * 4 3 2 6 6 C 1.31214 * 121.19321 * 179.97438 * 5 4 3 7 7 C 1.40104 * 120.45029 * 359.72070 * 6 5 4 8 8 C 1.36999 * 119.05502 * 0.54968 * 7 6 5 9 9 C 1.47709 * 120.63525 * 179.73540 * 8 7 6 10 10 O 1.21562 * 120.00161 * 359.72090 * 9 8 7 11 11 N 1.34780 * 119.99982 * 179.72252 * 9 8 7 12 12 C 1.46504 * 120.00052 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.49545 * 34.93160 * 12 11 9 14 14 C 1.53037 * 109.49366 * 274.83665 * 12 11 9 15 15 C 1.53034 * 109.53897 * 301.41153 * 14 12 11 16 16 C 1.53191 * 109.31509 * 298.63954 * 15 14 12 17 17 N 1.46920 * 108.77682 * 54.63338 * 16 15 14 18 18 C 1.36937 * 120.63503 * 126.39604 * 17 16 15 19 19 H 1.07999 * 120.00051 * 210.27592 * 18 17 16 20 20 C 1.38807 * 119.99855 * 30.26800 * 18 17 16 21 21 N 1.31626 * 119.99864 * 12.16155 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 192.15564 * 20 18 17 23 23 H 1.48496 * 109.46718 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47033 * 120.00322 * 22 20 18 25 25 H 1.48497 * 109.47295 * 240.00571 * 22 20 18 26 26 C 1.46928 * 118.73819 * 306.39338 * 17 16 15 27 27 H 1.09002 * 109.58535 * 293.82084 * 26 17 16 28 28 C 1.53001 * 109.70429 * 173.46562 * 26 17 16 29 29 N 1.36686 * 107.18386 * 359.97438 * 4 3 2 30 30 N 1.31357 * 125.18669 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47117 * 89.97754 * 1 2 3 32 32 H 1.08995 * 109.46498 * 209.97873 * 1 2 3 33 33 H 1.09002 * 109.46639 * 329.97555 * 1 2 3 34 34 H 1.07997 * 119.77712 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.47000 * 180.30656 * 7 6 5 36 36 H 0.96996 * 119.99975 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46569 * 61.43447 * 14 12 11 38 38 H 1.09006 * 109.46049 * 181.40526 * 14 12 11 39 39 H 1.08998 * 109.49972 * 58.59022 * 15 14 12 40 40 H 1.09000 * 109.50108 * 178.65115 * 15 14 12 41 41 H 1.09000 * 109.58913 * 174.42096 * 16 15 14 42 42 H 1.09005 * 109.58393 * 294.70569 * 16 15 14 43 43 H 0.97003 * 119.99877 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47034 * 300.35161 * 28 26 17 45 45 H 1.08992 * 109.47065 * 60.35512 * 28 26 17 46 46 H 1.09007 * 109.47040 * 180.35820 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2703 1.0826 0.0000 4 6 3.5514 0.7303 -0.0006 5 7 4.6832 1.4428 -0.0003 6 6 5.8563 0.8549 -0.0005 7 6 5.9500 -0.5430 0.0049 8 6 4.7996 -1.2869 -0.0010 9 6 4.8577 -2.7629 -0.0015 10 8 5.9335 -3.3288 -0.0016 11 7 3.7179 -3.4822 -0.0017 12 6 3.7755 -4.9461 -0.0015 13 1 4.6314 -5.2764 0.5871 14 6 3.9176 -5.4518 -1.4390 15 6 2.7329 -4.9603 -2.2738 16 6 1.4333 -5.5228 -1.6895 17 7 1.3596 -5.1628 -0.2670 18 6 0.2603 -4.5176 0.2334 19 1 0.3647 -3.8426 1.0701 20 6 -0.9881 -4.7308 -0.3347 21 7 -1.1636 -5.7194 -1.1859 22 14 -2.4191 -3.6151 0.1089 23 1 -1.9634 -2.5879 1.0795 24 1 -2.9246 -2.9471 -1.1174 25 1 -3.5068 -4.4230 0.7166 26 6 2.4878 -5.5084 0.6085 27 1 2.5663 -6.5923 0.6927 28 6 2.2693 -4.9008 1.9956 29 7 3.5945 -0.6359 -0.0003 30 7 2.2640 -1.0736 -0.0005 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3632 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 6.7557 1.4526 0.0001 35 1 6.9153 -1.0272 0.0097 36 1 2.8595 -3.0306 -0.0012 37 1 4.8456 -5.0730 -1.8672 38 1 3.9353 -6.5417 -1.4404 39 1 2.6998 -3.8710 -2.2525 40 1 2.8469 -5.3007 -3.3030 41 1 0.5805 -5.0974 -2.2187 42 1 1.4247 -6.6077 -1.7950 43 1 -2.0361 -5.8687 -1.5826 44 1 2.1911 -3.8170 1.9092 45 1 1.3501 -5.2983 2.4257 46 1 3.1113 -5.1541 2.6399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994207075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:11 Heat of formation + Delta-G solvation = 131.341211 kcal Electronic energy + Delta-G solvation = -32205.708434 eV Core-core repulsion = 28134.046833 eV Total energy + Delta-G solvation = -4071.661601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.07226 -40.12130 -38.94112 -37.69465 -34.86977 -34.06472 -32.46969 -32.33924 -31.74390 -30.87420 -29.54736 -28.85624 -26.58007 -25.49060 -25.02526 -24.17492 -22.31468 -21.46150 -21.00754 -20.52333 -19.02185 -18.56600 -18.36997 -17.19720 -16.89005 -16.49117 -15.68658 -15.47514 -15.06800 -14.99067 -14.29758 -13.98959 -13.80275 -13.79238 -13.66838 -13.51695 -13.22290 -13.12407 -12.77742 -12.62344 -12.53748 -12.35410 -11.93703 -11.74510 -11.35665 -11.32889 -11.02438 -10.78982 -10.73440 -10.61548 -10.56588 -10.24731 -10.16837 -10.05503 -9.94862 -9.74397 -9.68598 -9.39333 -9.02915 -8.72398 -8.51666 -6.70156 -5.82911 -3.29801 -0.18787 0.50425 1.61487 2.20262 2.84289 2.89608 3.09898 3.28931 3.30041 3.35644 3.40020 3.73760 4.28831 4.40338 4.42216 4.52720 4.91791 5.03161 5.21482 5.29027 5.40027 5.45092 5.51165 5.59980 5.62546 5.64097 5.80817 5.85976 5.89073 6.02330 6.10579 6.12663 6.19207 6.29344 6.32034 6.42380 6.53011 6.59580 6.68777 6.81638 6.85683 6.96143 7.14084 7.34106 7.64571 7.68320 7.76581 7.81115 8.24445 8.40420 9.15697 9.77289 10.34436 11.25113 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.005546 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.428765 B = 5047.672051 C = 6942.997481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.286 3.714 3 N -0.518 5.518 4 C 0.437 3.563 5 N -0.443 5.443 6 C 0.203 3.797 7 C -0.165 4.165 8 C 0.161 3.839 9 C 0.545 3.455 10 O -0.530 6.530 11 N -0.672 5.672 12 C 0.127 3.873 13 H 0.080 0.920 14 C -0.120 4.120 15 C -0.143 4.143 16 C 0.171 3.829 17 N -0.584 5.584 18 C -0.245 4.245 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.894 3.106 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.160 3.840 27 H 0.044 0.956 28 C -0.138 4.138 29 N -0.318 5.318 30 N -0.314 5.314 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.198 0.802 35 H 0.185 0.815 36 H 0.428 0.572 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.020 8.906 1.767 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.006 3.994 3 N -0.251 5.251 4 C 0.077 3.923 5 N -0.158 5.158 6 C 0.016 3.984 7 C -0.191 4.191 8 C 0.039 3.961 9 C 0.327 3.673 10 O -0.407 6.407 11 N -0.327 5.327 12 C 0.021 3.979 13 H 0.098 0.902 14 C -0.159 4.159 15 C -0.182 4.182 16 C 0.046 3.954 17 N -0.307 5.307 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.052 3.948 27 H 0.062 0.938 28 C -0.195 4.195 29 N -0.100 5.100 30 N -0.147 5.147 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.215 0.785 35 H 0.203 0.797 36 H 0.273 0.727 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.639 8.943 1.700 14.776 hybrid contribution -0.757 -0.085 0.034 0.762 sum 10.882 8.859 1.734 14.138 Atomic orbital electron populations 1.20410 0.82308 1.05262 1.04982 1.24616 0.98685 0.84251 0.91811 1.70725 0.96435 1.28557 1.29343 1.22760 0.93717 0.78388 0.97462 1.67785 0.95707 1.36472 1.15816 1.23631 0.95200 0.91927 0.87626 1.22247 0.98801 0.94777 1.03256 1.21156 0.82539 0.94955 0.97469 1.17614 0.85898 0.84227 0.79563 1.90811 1.28457 1.69942 1.51519 1.46453 1.09433 1.08338 1.68442 1.21788 1.00647 0.78078 0.97381 0.90158 1.21777 0.98403 1.00554 0.95165 1.22174 0.97798 1.00484 0.97731 1.20822 0.93867 0.96385 0.84326 1.44121 1.15847 1.67663 1.03088 1.19141 0.84784 1.17977 1.15548 0.91329 1.25104 0.97212 0.96995 1.00003 1.69995 1.22503 1.29316 1.32868 0.86360 0.82898 0.80433 0.77857 1.19898 1.21462 1.21827 1.20716 0.87122 0.96411 0.90539 0.93809 1.21801 1.00847 1.01031 0.95829 1.49108 1.06395 1.09170 1.45353 1.78444 0.82594 1.20504 1.33127 0.88695 0.88276 0.88947 0.78536 0.79745 0.72746 0.93092 0.91363 0.93212 0.93286 0.89171 0.96259 0.93734 0.92926 0.91462 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.51 36.01 0.38 -0.60 16 2 C 0.29 4.82 8.09 -157.00 -1.27 3.55 16 3 N -0.52 -8.90 11.24 -11.80 -0.13 -9.03 16 4 C 0.44 7.05 8.99 -323.16 -2.91 4.14 16 5 N -0.44 -5.79 10.45 -13.84 -0.14 -5.94 16 6 C 0.20 1.72 11.26 -17.12 -0.19 1.53 16 7 C -0.16 -1.62 9.63 -39.33 -0.38 -2.00 16 8 C 0.16 2.31 6.81 -82.15 -0.56 1.75 16 9 C 0.55 9.00 7.77 -12.39 -0.10 8.90 16 10 O -0.53 -9.12 16.03 5.31 0.09 -9.04 16 11 N -0.67 -12.00 3.46 -54.68 -0.19 -12.19 16 12 C 0.13 2.26 2.32 -67.81 -0.16 2.10 16 13 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 14 C -0.12 -2.10 5.58 -26.69 -0.15 -2.25 16 15 C -0.14 -2.74 5.93 -26.61 -0.16 -2.89 16 16 C 0.17 3.89 5.27 -3.71 -0.02 3.87 16 17 N -0.58 -13.31 2.65 -164.78 -0.44 -13.75 16 18 C -0.24 -6.05 8.59 -15.06 -0.13 -6.18 16 19 H 0.07 1.68 6.24 -52.49 -0.33 1.36 16 20 C 0.01 0.14 5.02 -17.43 -0.09 0.05 16 21 N -0.90 -24.72 11.06 55.49 0.61 -24.10 16 22 Si 0.89 20.15 29.57 -169.99 -5.03 15.12 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.16 3.13 3.19 -67.60 -0.22 2.92 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 28 C -0.14 -2.53 7.74 37.16 0.29 -2.24 16 29 N -0.32 -5.20 3.93 -10.51 -0.04 -5.24 16 30 N -0.31 -5.68 10.11 32.39 0.33 -5.35 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.20 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.19 1.33 7.66 -52.49 -0.40 0.92 16 36 H 0.43 8.26 4.87 -40.82 -0.20 8.06 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.01 7.53 -51.93 -0.39 0.62 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.05 1.01 6.39 -51.93 -0.33 0.68 16 45 H 0.07 1.30 7.66 -51.93 -0.40 0.91 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -31.14 370.15 -11.14 -42.28 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.12 Total: 9.01 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: -5.65 Total: 12.65 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: 0.00 Total: -75.60 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.14 -11.14 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994207075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.618 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds