Wall clock time and date at job start Wed Apr 1 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35684 * 120.48724 * 2 1 4 4 C 1.40171 * 119.27490 * 179.97438 * 3 2 1 5 5 N 1.31253 * 120.35695 * 0.02562 * 4 3 2 6 6 C 1.33997 * 120.88113 * 359.97438 * 5 4 3 7 7 N 1.32496 * 132.34486 * 180.35280 * 6 5 4 8 8 C 1.33465 * 109.75373 * 180.02562 * 7 6 5 9 9 C 1.48131 * 125.32379 * 179.85223 * 8 7 6 10 10 O 1.21521 * 119.99822 * 179.69622 * 9 8 7 11 11 N 1.34776 * 119.99865 * 359.70065 * 9 8 7 12 12 C 1.46496 * 119.99654 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.50158 * 325.05880 * 12 11 9 14 14 C 1.53038 * 109.52626 * 85.14829 * 12 11 9 15 15 C 1.53038 * 109.53862 * 58.59896 * 14 12 11 16 16 C 1.52761 * 109.38433 * 61.24078 * 15 14 12 17 17 N 1.46922 * 109.00701 * 305.58917 * 16 15 14 18 18 C 1.36938 * 120.62855 * 233.57867 * 17 16 15 19 19 H 1.07998 * 119.99819 * 150.27885 * 18 17 16 20 20 C 1.38806 * 120.00130 * 330.28119 * 18 17 16 21 21 N 1.31621 * 120.00299 * 344.40870 * 20 18 17 22 22 Si 1.86808 * 120.00000 * 164.40872 * 20 18 17 23 23 H 1.48503 * 109.46920 * 266.31692 * 22 20 18 24 24 H 1.48499 * 109.46842 * 26.31562 * 22 20 18 25 25 H 1.48499 * 109.46960 * 146.31757 * 22 20 18 26 26 C 1.46918 * 118.74047 * 53.31114 * 17 16 15 27 27 H 1.09007 * 109.59242 * 66.42667 * 26 17 16 28 28 C 1.53006 * 109.59057 * 186.71164 * 26 17 16 29 29 N 1.31991 * 109.35375 * 359.59823 * 8 7 6 30 30 N 1.36168 * 120.48837 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.47301 * 270.00228 * 1 2 3 32 32 H 1.08997 * 109.47512 * 30.00476 * 1 2 3 33 33 H 1.09005 * 109.47274 * 150.00256 * 1 2 3 34 34 H 1.08000 * 120.36145 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.81892 * 180.02562 * 4 3 2 36 36 H 0.97001 * 120.00066 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46213 * 178.61984 * 14 12 11 38 38 H 1.08996 * 109.45886 * 298.59254 * 14 12 11 39 39 H 1.09003 * 109.49759 * 181.32344 * 15 14 12 40 40 H 1.09003 * 109.49808 * 301.38384 * 15 14 12 41 41 H 1.09001 * 109.51243 * 185.70529 * 16 15 14 42 42 H 1.09003 * 109.43084 * 65.42740 * 16 15 14 43 43 H 0.97003 * 120.00183 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.46585 * 59.99291 * 28 26 17 45 45 H 1.08999 * 109.47023 * 179.97438 * 28 26 17 46 46 H 1.09003 * 109.46372 * 299.99819 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1396 0.0005 5 7 4.2359 -0.0068 0.0005 6 6 3.5665 -1.1675 0.0005 7 7 3.9689 -2.4299 0.0066 8 6 2.9091 -3.2412 0.0028 9 6 2.9637 -4.7215 0.0044 10 8 1.9343 -5.3674 0.0062 11 7 4.1549 -5.3519 0.0039 12 6 4.2088 -6.8158 0.0060 13 1 3.3812 -7.2096 0.5960 14 6 4.1040 -7.3336 -1.4304 15 6 5.2469 -6.7552 -2.2677 16 6 6.5834 -7.2115 -1.6852 17 7 6.6340 -6.8491 -0.2623 18 6 7.6815 -6.1209 0.2354 19 1 7.5299 -5.4642 1.0792 20 6 8.9380 -6.2269 -0.3447 21 7 9.2067 -7.2291 -1.1545 22 14 10.2479 -4.9469 0.0239 23 1 10.2148 -3.8904 -1.0191 24 1 9.9855 -4.3389 1.3530 25 1 11.5844 -5.5942 0.0307 26 6 5.5364 -7.2777 0.6153 27 1 5.5404 -8.3643 0.7016 28 6 5.7132 -6.6526 2.0006 29 7 1.8048 -2.5182 0.0031 30 7 2.1978 -1.1734 0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6692 2.1124 -0.0004 35 1 4.1535 2.0650 0.0010 36 1 4.9765 -4.8362 0.0021 37 1 4.1688 -8.4217 -1.4298 38 1 3.1495 -7.0270 -1.8581 39 1 5.1581 -7.1057 -3.2960 40 1 5.1969 -5.6665 -2.2488 41 1 7.3987 -6.7206 -2.2165 42 1 6.6746 -8.2926 -1.7905 43 1 10.0848 -7.3029 -1.5602 44 1 5.7039 -5.5662 1.9128 45 1 4.8978 -6.9714 2.6498 46 1 6.6639 -6.9746 2.4257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994336166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:31 Heat of formation + Delta-G solvation = 128.331745 kcal Electronic energy + Delta-G solvation = -30766.413765 eV Core-core repulsion = 26694.621664 eV Total energy + Delta-G solvation = -4071.792101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.16891 -39.95941 -38.92391 -37.49127 -35.58718 -33.99871 -32.56316 -32.10084 -31.53250 -31.18204 -29.43167 -28.94650 -26.50700 -25.32857 -24.87770 -24.46199 -22.50133 -21.76498 -20.79396 -20.30745 -18.97858 -18.70939 -18.22235 -17.22995 -17.02358 -16.38194 -15.97294 -15.35951 -14.95894 -14.87006 -14.56496 -14.07480 -14.04886 -13.81928 -13.77551 -13.50486 -13.13418 -12.97109 -12.92322 -12.91321 -12.86776 -12.53119 -11.83893 -11.79840 -11.24786 -11.21684 -10.91393 -10.66105 -10.59762 -10.47228 -10.46380 -10.34113 -10.09809 -10.02361 -10.00095 -9.94742 -9.62718 -9.27595 -9.05157 -8.60912 -8.41197 -6.62614 -5.74824 -3.20027 0.01035 0.32887 1.44476 1.70481 2.83485 2.95357 3.15386 3.43242 3.45409 3.50392 3.51994 3.69470 3.89911 4.30895 4.51250 4.53326 4.75354 4.78356 4.84861 4.85766 5.25923 5.32720 5.37885 5.52321 5.56634 5.61256 5.72370 5.74769 5.79894 5.89724 5.97910 6.14606 6.24945 6.31337 6.43812 6.53882 6.65706 6.70888 6.80549 6.94263 6.97132 7.08270 7.10093 7.42901 7.49736 7.70905 7.86565 7.92514 8.38643 8.48574 9.24496 9.87014 10.43267 11.33356 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003590 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.096770 B = 7797.180010 C = 9395.070258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.203 3.797 3 C -0.230 4.230 4 C 0.209 3.791 5 N -0.450 5.450 6 C 0.444 3.556 7 N -0.489 5.489 8 C 0.247 3.753 9 C 0.602 3.398 10 O -0.523 6.523 11 N -0.668 5.668 12 C 0.132 3.868 13 H 0.082 0.918 14 C -0.122 4.122 15 C -0.143 4.143 16 C 0.172 3.828 17 N -0.585 5.585 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.293 1.293 26 C 0.161 3.839 27 H 0.044 0.956 28 C -0.139 4.139 29 N -0.273 5.273 30 N -0.329 5.329 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.422 0.578 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 16.935 1.708 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 C -0.255 4.255 4 C 0.022 3.978 5 N -0.164 5.164 6 C 0.084 3.916 7 N -0.222 5.222 8 C -0.037 4.037 9 C 0.381 3.619 10 O -0.397 6.397 11 N -0.320 5.320 12 C 0.026 3.974 13 H 0.100 0.900 14 C -0.160 4.160 15 C -0.182 4.182 16 C 0.046 3.954 17 N -0.309 5.309 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.220 1.220 26 C 0.053 3.947 27 H 0.062 0.938 28 C -0.196 4.196 29 N -0.107 5.107 30 N -0.111 5.111 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.209 0.791 36 H 0.261 0.739 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.354 15.486 1.652 22.583 hybrid contribution 0.380 1.336 0.009 1.389 sum -15.973 16.821 1.661 23.256 Atomic orbital electron populations 1.21084 0.86276 1.05649 1.05025 1.20936 0.96736 0.81972 0.91891 1.21822 0.95775 0.97857 1.10010 1.23640 0.91722 0.95838 0.86553 1.68104 1.36157 0.95024 1.17113 1.22776 0.78252 0.93717 0.96882 1.70968 1.28062 0.96289 1.26891 1.24442 0.85687 0.97167 0.96378 1.16373 0.85136 0.81657 0.78696 1.90803 1.33720 1.64663 1.50536 1.45847 1.07706 1.08471 1.69984 1.21770 1.00535 0.77768 0.97329 0.90039 1.21789 0.98626 1.00322 0.95276 1.22098 0.97909 1.00485 0.97695 1.20704 0.93244 0.97096 0.84334 1.44150 1.21004 1.62702 1.03054 1.19178 0.86806 1.16869 1.15420 0.91099 1.25069 0.96908 0.96978 1.00229 1.70034 1.21338 1.28798 1.34325 0.86319 0.81170 0.81288 0.78268 1.21416 1.20311 1.21971 1.20718 0.86891 0.96522 0.90549 0.93832 1.21815 1.01008 1.01047 0.95740 1.78866 1.19401 0.82843 1.29550 1.49105 1.09230 1.06362 1.46407 0.88480 0.88354 0.89030 0.80830 0.79078 0.73876 0.91430 0.92988 0.93281 0.92805 0.89570 0.96311 0.93744 0.92656 0.94146 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.13 36.00 0.36 -0.27 16 2 C 0.20 1.71 6.86 -81.58 -0.56 1.15 16 3 C -0.23 -1.17 9.72 -39.77 -0.39 -1.56 16 4 C 0.21 1.45 11.27 -17.07 -0.19 1.26 16 5 N -0.45 -5.86 10.48 -13.79 -0.14 -6.00 16 6 C 0.44 7.04 8.99 -323.04 -2.90 4.13 16 7 N -0.49 -9.08 10.89 -12.23 -0.13 -9.21 16 8 C 0.25 4.54 7.92 -156.79 -1.24 3.30 16 9 C 0.60 11.50 7.81 -12.20 -0.10 11.40 16 10 O -0.52 -10.79 16.73 5.35 0.09 -10.70 16 11 N -0.67 -12.60 3.46 -54.54 -0.19 -12.78 16 12 C 0.13 2.43 2.33 -67.81 -0.16 2.28 16 13 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 14 C -0.12 -2.21 5.58 -26.69 -0.15 -2.35 16 15 C -0.14 -2.82 5.91 -26.83 -0.16 -2.98 16 16 C 0.17 4.02 5.26 -3.93 -0.02 4.00 16 17 N -0.59 -13.90 2.65 -165.03 -0.44 -14.34 16 18 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 19 H 0.07 1.83 6.23 -52.49 -0.33 1.50 16 20 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 21 N -0.90 -25.72 11.23 55.49 0.62 -25.09 16 22 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 C 0.16 3.25 3.19 -67.60 -0.22 3.03 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 28 C -0.14 -2.62 7.74 37.16 0.29 -2.33 16 29 N -0.27 -4.58 12.67 32.02 0.41 -4.18 16 30 N -0.33 -4.53 3.91 -10.07 -0.04 -4.57 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.18 8.09 -51.93 -0.42 -0.24 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.17 0.07 8.06 -52.49 -0.42 -0.35 16 35 H 0.19 0.43 8.06 -52.49 -0.42 0.00 16 36 H 0.42 8.55 7.45 -40.82 -0.30 8.24 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 1.12 7.53 -51.93 -0.39 0.72 16 41 H 0.09 2.28 6.14 -51.93 -0.32 1.96 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.05 1.08 6.40 -51.93 -0.33 0.74 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.34 7.63 -51.93 -0.40 0.94 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -34.63 375.74 -11.08 -45.71 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.25 Total: 4.34 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: -5.64 Total: 14.42 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: 0.09 Total: -76.17 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.63 -11.08 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994336166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.041 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds