Wall clock time and date at job start Wed Apr 1 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35684 * 120.48724 * 2 1 4 4 C 1.40171 * 119.27490 * 179.97438 * 3 2 1 5 5 N 1.31253 * 120.35695 * 0.02562 * 4 3 2 6 6 C 1.33997 * 120.88113 * 359.97438 * 5 4 3 7 7 N 1.32496 * 132.34486 * 180.35280 * 6 5 4 8 8 C 1.33465 * 109.75373 * 180.02562 * 7 6 5 9 9 C 1.48131 * 125.32379 * 179.85223 * 8 7 6 10 10 O 1.21521 * 119.99822 * 179.69622 * 9 8 7 11 11 N 1.34776 * 119.99865 * 359.70065 * 9 8 7 12 12 C 1.46496 * 119.99654 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.50158 * 325.05880 * 12 11 9 14 14 C 1.53038 * 109.52626 * 85.14829 * 12 11 9 15 15 C 1.53038 * 109.53862 * 58.59896 * 14 12 11 16 16 C 1.52761 * 109.38433 * 61.24078 * 15 14 12 17 17 N 1.46922 * 109.00701 * 305.58917 * 16 15 14 18 18 C 1.36938 * 120.62855 * 233.57867 * 17 16 15 19 19 H 1.07998 * 119.99819 * 150.27885 * 18 17 16 20 20 C 1.38806 * 120.00130 * 330.28119 * 18 17 16 21 21 N 1.31621 * 120.00299 * 344.40870 * 20 18 17 22 22 Si 1.86808 * 120.00000 * 164.40872 * 20 18 17 23 23 H 1.48503 * 109.46920 * 266.31692 * 22 20 18 24 24 H 1.48499 * 109.46842 * 26.31562 * 22 20 18 25 25 H 1.48499 * 109.46960 * 146.31757 * 22 20 18 26 26 C 1.46918 * 118.74047 * 53.31114 * 17 16 15 27 27 H 1.09007 * 109.59242 * 66.42667 * 26 17 16 28 28 C 1.53006 * 109.59057 * 186.71164 * 26 17 16 29 29 N 1.31991 * 109.35375 * 359.59823 * 8 7 6 30 30 N 1.36168 * 120.48837 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.47301 * 270.00228 * 1 2 3 32 32 H 1.08997 * 109.47512 * 30.00476 * 1 2 3 33 33 H 1.09005 * 109.47274 * 150.00256 * 1 2 3 34 34 H 1.08000 * 120.36145 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.81892 * 180.02562 * 4 3 2 36 36 H 0.97001 * 120.00066 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46213 * 178.61984 * 14 12 11 38 38 H 1.08996 * 109.45886 * 298.59254 * 14 12 11 39 39 H 1.09003 * 109.49759 * 181.32344 * 15 14 12 40 40 H 1.09003 * 109.49808 * 301.38384 * 15 14 12 41 41 H 1.09001 * 109.51243 * 185.70529 * 16 15 14 42 42 H 1.09003 * 109.43084 * 65.42740 * 16 15 14 43 43 H 0.97003 * 120.00183 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.46585 * 59.99291 * 28 26 17 45 45 H 1.08999 * 109.47023 * 179.97438 * 28 26 17 46 46 H 1.09003 * 109.46372 * 299.99819 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1396 0.0005 5 7 4.2359 -0.0068 0.0005 6 6 3.5665 -1.1675 0.0005 7 7 3.9689 -2.4299 0.0066 8 6 2.9091 -3.2412 0.0028 9 6 2.9637 -4.7215 0.0044 10 8 1.9343 -5.3674 0.0062 11 7 4.1549 -5.3519 0.0039 12 6 4.2088 -6.8158 0.0060 13 1 3.3812 -7.2096 0.5960 14 6 4.1040 -7.3336 -1.4304 15 6 5.2469 -6.7552 -2.2677 16 6 6.5834 -7.2115 -1.6852 17 7 6.6340 -6.8491 -0.2623 18 6 7.6815 -6.1209 0.2354 19 1 7.5299 -5.4642 1.0792 20 6 8.9380 -6.2269 -0.3447 21 7 9.2067 -7.2291 -1.1545 22 14 10.2479 -4.9469 0.0239 23 1 10.2148 -3.8904 -1.0191 24 1 9.9855 -4.3389 1.3530 25 1 11.5844 -5.5942 0.0307 26 6 5.5364 -7.2777 0.6153 27 1 5.5404 -8.3643 0.7016 28 6 5.7132 -6.6526 2.0006 29 7 1.8048 -2.5182 0.0031 30 7 2.1978 -1.1734 0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6692 2.1124 -0.0004 35 1 4.1535 2.0650 0.0010 36 1 4.9765 -4.8362 0.0021 37 1 4.1688 -8.4217 -1.4298 38 1 3.1495 -7.0270 -1.8581 39 1 5.1581 -7.1057 -3.2960 40 1 5.1969 -5.6665 -2.2488 41 1 7.3987 -6.7206 -2.2165 42 1 6.6746 -8.2926 -1.7905 43 1 10.0848 -7.3029 -1.5602 44 1 5.7039 -5.5662 1.9128 45 1 4.8978 -6.9714 2.6498 46 1 6.6639 -6.9746 2.4257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994336166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:30 Heat of formation + Delta-G solvation = 106.871810 kcal Electronic energy + Delta-G solvation = -30767.344338 eV Core-core repulsion = 26694.621664 eV Total energy + Delta-G solvation = -4072.722673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.15292 -41.35912 -39.97746 -39.05615 -36.37669 -35.72717 -34.15828 -33.52925 -32.87854 -32.21391 -31.17015 -29.51109 -28.11165 -26.94215 -26.40828 -25.28213 -23.83477 -23.09995 -22.40798 -21.69939 -20.41436 -19.84888 -19.24839 -18.36602 -18.26250 -18.02981 -17.14905 -16.62713 -16.51521 -16.37303 -15.75011 -15.54100 -15.24236 -15.14372 -14.85483 -14.59307 -14.49784 -14.38111 -14.27551 -13.87199 -13.81259 -13.58761 -13.34309 -12.98887 -12.92011 -12.73967 -12.64091 -12.47654 -12.33591 -12.22182 -11.92738 -11.70019 -11.66831 -11.52060 -11.40353 -11.09641 -11.05984 -10.96031 -10.48965 -10.11624 -9.94199 -8.60440 -7.81335 -5.27129 -0.75838 -0.51848 0.54823 0.57888 1.47839 1.51268 1.58114 1.67713 1.92749 2.17691 2.31203 2.54254 2.86777 3.21090 3.32619 3.35231 3.58309 3.82929 3.95458 4.01540 4.09927 4.17419 4.28144 4.36910 4.43779 4.50485 4.53491 4.55647 4.64904 4.67644 4.74850 4.92554 4.95897 4.97182 4.99616 5.08154 5.12840 5.17660 5.23095 5.32447 5.40352 5.49023 5.57906 5.75079 5.79498 6.15400 6.34526 6.45658 6.60288 6.90003 7.21039 7.90196 8.42193 9.25201 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003590 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.096770 B = 7797.180010 C = 9395.070258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.221 3.779 5 N -0.494 5.494 6 C 0.427 3.573 7 N -0.535 5.535 8 C 0.226 3.774 9 C 0.607 3.393 10 O -0.544 6.544 11 N -0.667 5.667 12 C 0.138 3.862 13 H 0.095 0.905 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.180 3.820 17 N -0.597 5.597 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.955 3.045 23 H -0.292 1.292 24 H -0.270 1.270 25 H -0.297 1.297 26 C 0.159 3.841 27 H 0.047 0.953 28 C -0.130 4.130 29 N -0.292 5.292 30 N -0.329 5.329 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.065 0.935 34 H 0.238 0.762 35 H 0.245 0.755 36 H 0.415 0.585 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.004 0.996 43 H 0.247 0.753 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.551 20.640 2.297 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.053 3.947 3 C -0.211 4.211 4 C 0.038 3.962 5 N -0.212 5.212 6 C 0.067 3.933 7 N -0.270 5.270 8 C -0.058 4.058 9 C 0.388 3.612 10 O -0.420 6.420 11 N -0.317 5.317 12 C 0.032 3.968 13 H 0.113 0.887 14 C -0.153 4.153 15 C -0.168 4.168 16 C 0.055 3.945 17 N -0.321 5.321 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.241 4.241 21 N -0.579 5.579 22 Si 0.784 3.216 23 H -0.219 1.219 24 H -0.194 1.194 25 H -0.224 1.224 26 C 0.052 3.948 27 H 0.065 0.935 28 C -0.188 4.188 29 N -0.127 5.127 30 N -0.111 5.111 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.261 0.739 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.531 19.259 2.260 26.822 hybrid contribution 0.927 0.507 -0.151 1.067 sum -17.604 19.766 2.108 26.553 Atomic orbital electron populations 1.21221 0.83911 1.06482 1.05913 1.22007 0.98705 0.81085 0.92946 1.22625 0.94995 0.98785 1.04699 1.24760 0.93299 0.95557 0.82545 1.68224 1.37310 0.95589 1.20033 1.22899 0.79222 0.93883 0.97267 1.70777 1.29158 0.98019 1.29050 1.24061 0.86423 0.96711 0.98583 1.16439 0.84633 0.82293 0.77843 1.90766 1.34145 1.65458 1.51630 1.45804 1.07439 1.08419 1.70076 1.21685 0.99639 0.77803 0.97655 0.88713 1.21745 0.97918 1.01059 0.94619 1.21910 0.96463 0.99656 0.98815 1.20480 0.94034 0.95682 0.84350 1.44308 1.21325 1.62755 1.03742 1.19413 0.87261 1.16300 1.14632 0.91012 1.25683 0.98770 0.98625 1.00980 1.70165 1.21344 1.30442 1.35903 0.85439 0.78883 0.79146 0.78115 1.21934 1.19433 1.22393 1.20866 0.86424 0.96743 0.90754 0.93512 1.21725 1.01349 1.00303 0.95389 1.78656 1.19359 0.84568 1.30119 1.49150 1.09178 1.06457 1.46304 0.87450 0.84005 0.91602 0.74566 0.73907 0.74729 0.89991 0.92328 0.91509 0.94073 0.92984 0.97831 0.94412 0.93576 0.91276 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.13 71.23 0.72 -0.11 16 2 C 0.17 2.34 6.86 41.29 0.28 2.62 16 3 C -0.19 -0.88 9.72 22.15 0.22 -0.67 16 4 C 0.22 2.09 11.27 85.25 0.96 3.05 16 5 N -0.49 -12.20 10.48 -197.54 -2.07 -14.27 16 6 C 0.43 13.65 8.99 261.57 2.35 16.00 16 7 N -0.53 -20.78 10.89 -192.61 -2.10 -22.88 16 8 C 0.23 8.67 7.92 137.40 1.09 9.76 16 9 C 0.61 23.93 7.81 86.87 0.68 24.61 16 10 O -0.54 -22.84 16.73 -3.78 -0.06 -22.90 16 11 N -0.67 -25.75 3.46 -444.76 -1.54 -27.29 16 12 C 0.14 5.06 2.33 45.07 0.10 5.17 16 13 H 0.09 3.29 7.58 -2.39 -0.02 3.27 16 14 C -0.11 -4.11 5.58 30.62 0.17 -3.94 16 15 C -0.13 -5.17 5.91 30.53 0.18 -4.99 16 16 C 0.18 8.70 5.26 86.22 0.45 9.16 16 17 N -0.60 -29.03 2.65 -676.05 -1.79 -30.82 16 18 C -0.25 -13.15 8.58 84.03 0.72 -12.43 16 19 H 0.07 3.78 6.23 -2.91 -0.02 3.76 16 20 C -0.05 -2.52 4.94 84.86 0.42 -2.10 16 21 N -0.93 -55.07 11.23 21.65 0.24 -54.83 16 22 Si 0.95 45.95 29.58 68.60 2.03 47.98 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 26 C 0.16 6.43 3.19 44.98 0.14 6.57 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 C -0.13 -4.91 7.74 71.98 0.56 -4.36 16 29 N -0.29 -10.09 12.67 -52.60 -0.67 -10.76 16 30 N -0.33 -8.92 3.91 -185.77 -0.73 -9.65 16 31 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.14 -0.28 8.09 -2.39 -0.02 -0.30 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.24 -1.87 8.06 -2.91 -0.02 -1.90 16 35 H 0.24 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.42 17.50 7.45 -92.71 -0.69 16.81 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.74 7.53 -2.39 -0.02 1.73 16 41 H 0.05 2.87 6.14 -2.39 -0.01 2.86 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 1.81 6.40 -2.39 -0.02 1.80 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.05 2.09 7.63 -2.39 -0.02 2.07 16 Total: -1.00 -82.81 375.74 2.70 -80.11 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.34 Total: 16.95 kcal Atomic # 6 Polarization: 39.30 SS G_CDS: 9.05 Total: 48.35 kcal Atomic # 7 Polarization: -161.84 SS G_CDS: -8.65 Total: -170.49 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.90 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -82.81 2.70 -80.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994336166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.981 kcal (2) G-P(sol) polarization free energy of solvation -82.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds