Wall clock time and date at job start Wed Apr 1 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39841 * 126.45565 * 2 1 4 4 C 1.35453 * 107.86419 * 180.26923 * 3 2 1 5 5 N 1.35539 * 108.87018 * 359.73776 * 4 3 2 6 6 H 0.97005 * 125.67546 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64191 * 0.02562 * 5 4 3 8 8 C 1.46683 * 126.22999 * 179.97438 * 7 5 4 9 9 O 1.21696 * 119.99773 * 180.02562 * 8 7 5 10 10 N 1.34774 * 119.99962 * 0.02562 * 8 7 5 11 11 C 1.46507 * 119.99843 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46961 * 179.97438 * 11 10 8 13 13 C 1.35359 * 126.74822 * 95.24824 * 12 11 10 14 14 N 1.35307 * 106.17570 * 180.12555 * 13 12 11 15 15 C 1.46504 * 125.87126 * 179.90588 * 14 13 12 16 16 H 1.08997 * 110.88605 * 150.83265 * 15 14 13 17 17 C 1.55147 * 111.00493 * 274.71907 * 15 14 13 18 18 C 1.54322 * 102.94624 * 82.60413 * 17 15 14 19 19 N 1.47021 * 107.26798 * 22.19378 * 18 17 15 20 20 C 1.36934 * 125.64585 * 181.01760 * 19 18 17 21 21 H 1.08007 * 120.00136 * 170.02273 * 20 19 18 22 22 C 1.38811 * 120.00358 * 350.02349 * 20 19 18 23 23 N 1.31625 * 120.00251 * 164.74868 * 22 20 19 24 24 Si 1.86793 * 119.99778 * 344.74971 * 22 20 19 25 25 H 1.48505 * 109.47260 * 185.53364 * 24 22 20 26 26 H 1.48503 * 109.47295 * 305.53231 * 24 22 20 27 27 H 1.48502 * 109.47311 * 65.53219 * 24 22 20 28 28 C 1.47424 * 108.70340 * 1.28852 * 19 18 17 29 29 N 1.28716 * 108.26265 * 359.64224 * 14 13 12 30 30 N 1.28632 * 110.18061 * 0.22499 * 29 14 13 31 31 H 1.09002 * 109.46887 * 270.17945 * 1 2 3 32 32 H 1.09005 * 109.47433 * 30.17310 * 1 2 3 33 33 H 1.08998 * 109.47224 * 150.18502 * 1 2 3 34 34 H 1.08002 * 126.07111 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.56634 * 179.76943 * 4 3 2 36 36 H 0.97000 * 119.99958 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46769 * 60.00271 * 11 10 8 38 38 H 1.08994 * 109.47447 * 300.00098 * 11 10 8 39 39 H 1.08006 * 126.91280 * 0.02562 * 13 12 11 40 40 H 1.09005 * 110.72233 * 324.24094 * 17 15 14 41 41 H 1.09003 * 110.72123 * 200.97105 * 17 15 14 42 42 H 1.08998 * 109.88341 * 262.77653 * 18 17 15 43 43 H 1.09001 * 110.00892 * 141.68251 * 18 17 15 44 44 H 0.97005 * 119.99705 * 354.97803 * 23 22 20 45 45 H 1.08995 * 110.37194 * 94.48563 * 28 19 18 46 46 H 1.09003 * 110.36376 * 216.80656 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6929 -0.0061 5 7 3.6284 -0.6624 -0.0040 6 1 4.4191 -1.2243 -0.0069 7 6 2.3263 -1.1088 0.0029 8 6 1.8899 -2.5092 0.0067 9 8 0.7026 -2.7765 0.0123 10 7 2.8037 -3.4998 0.0038 11 6 2.3678 -4.8985 0.0081 12 6 3.5748 -5.8008 0.0030 13 6 4.1697 -6.3636 1.0807 14 7 5.2096 -7.0857 0.6031 15 6 6.1491 -7.8724 1.4059 16 1 6.5340 -8.7180 0.8360 17 6 7.3066 -6.9853 1.9354 18 6 6.6937 -6.3302 3.1910 19 7 5.5808 -7.1848 3.6300 20 6 4.7633 -6.9427 4.7016 21 1 3.8760 -7.5404 4.8498 22 6 5.0750 -5.9292 5.5974 23 7 4.1638 -5.4936 6.4414 24 14 6.7876 -5.1835 5.6050 25 1 6.9049 -4.2242 6.7326 26 1 7.7963 -6.2616 5.7654 27 1 7.0234 -4.4719 4.3231 28 6 5.4949 -8.3488 2.7294 29 7 5.2281 -6.9670 -0.6785 30 7 4.2660 -6.2072 -1.0678 31 1 -0.3633 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3633 -0.8916 -0.5109 34 1 2.0136 2.1550 0.0004 35 1 4.4972 1.3253 -0.0111 36 1 3.7500 -3.2867 -0.0004 37 1 1.7649 -5.0938 -0.8787 38 1 1.7734 -5.0912 0.9012 39 1 3.8748 -6.2565 2.1142 40 1 7.5800 -6.2286 1.2000 41 1 8.1697 -7.5957 2.2012 42 1 6.3226 -5.3350 2.9462 43 1 7.4428 -6.2627 3.9799 44 1 3.2549 -5.8285 6.3894 45 1 6.0459 -9.1921 3.1456 46 1 4.4531 -8.6216 2.5604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999992871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:25 Heat of formation + Delta-G solvation = 123.498285 kcal Electronic energy + Delta-G solvation = -30148.753184 eV Core-core repulsion = 26076.751489 eV Total energy + Delta-G solvation = -4072.001695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.45027 -42.29366 -40.16700 -39.77566 -36.53573 -35.42473 -33.97711 -33.47919 -32.57798 -31.51482 -30.69522 -30.06432 -28.41485 -27.24129 -26.14335 -24.28541 -23.43793 -22.85675 -22.41081 -21.61367 -21.49530 -20.40254 -19.71958 -19.60727 -18.33402 -17.61324 -17.28476 -16.89958 -16.63421 -16.60522 -16.04948 -15.86287 -15.47706 -15.22890 -15.04947 -14.91464 -14.66783 -14.45386 -14.19363 -13.89963 -13.87387 -13.67592 -13.59535 -13.26566 -13.18544 -13.03293 -12.95989 -12.84148 -12.55864 -12.50352 -12.02173 -11.91451 -11.47911 -11.34902 -11.15877 -11.06582 -10.72457 -10.38212 -10.34348 -9.71193 -9.17994 -9.13731 -8.64987 -5.51617 0.42825 0.47030 1.11832 1.27725 1.36544 1.47427 1.68586 1.82185 2.15154 2.28928 2.30015 2.53338 3.00040 3.06151 3.18188 3.31596 3.41949 3.70154 3.83954 3.87624 4.05088 4.13900 4.19825 4.23797 4.24883 4.35542 4.41828 4.52775 4.54267 4.68375 4.75084 4.77030 4.82206 4.87504 4.89391 4.94593 4.98137 5.00259 5.11302 5.21145 5.45065 5.49925 5.60694 5.74668 5.96799 6.05948 6.35239 6.56098 6.76440 7.02768 7.35034 7.37081 7.99550 8.87041 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003501 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.204176 B = 7995.319960 C = 9361.133617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.091 4.091 3 C -0.229 4.229 4 C 0.048 3.952 5 N -0.534 5.534 6 H 0.426 0.574 7 C -0.093 4.093 8 C 0.587 3.413 9 O -0.564 6.564 10 N -0.716 5.716 11 C 0.221 3.779 12 C -0.058 4.058 13 C 0.002 3.998 14 N -0.267 5.267 15 C 0.125 3.875 16 H 0.164 0.836 17 C -0.120 4.120 18 C 0.095 3.905 19 N -0.626 5.626 20 C -0.308 4.308 21 H 0.052 0.948 22 C -0.071 4.071 23 N -0.963 5.963 24 Si 1.103 2.897 25 H -0.321 1.321 26 H -0.278 1.278 27 H -0.255 1.255 28 C 0.124 3.876 29 N -0.093 5.093 30 N -0.274 5.274 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.213 0.787 36 H 0.403 0.597 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.183 0.817 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.030 0.970 43 H 0.035 0.965 44 H 0.249 0.751 45 H 0.081 0.919 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 6.410 -15.324 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.253 4.253 4 C -0.089 4.089 5 N -0.131 5.131 6 H 0.266 0.734 7 C -0.205 4.205 8 C 0.377 3.623 9 O -0.443 6.443 10 N -0.367 5.367 11 C 0.096 3.904 12 C -0.196 4.196 13 C -0.152 4.152 14 N -0.059 5.059 15 C 0.023 3.977 16 H 0.181 0.819 17 C -0.159 4.159 18 C -0.029 4.029 19 N -0.354 5.354 20 C -0.436 4.436 21 H 0.070 0.930 22 C -0.265 4.265 23 N -0.607 5.607 24 Si 0.932 3.068 25 H -0.251 1.251 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.002 4.002 29 N -0.072 5.072 30 N -0.142 5.142 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.181 0.819 35 H 0.230 0.770 36 H 0.238 0.762 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.200 0.800 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.027 6.662 -15.806 18.537 hybrid contribution -1.261 -1.301 1.044 2.092 sum 5.766 5.361 -14.762 16.730 Atomic orbital electron populations 1.20317 0.89467 1.02776 1.02004 1.20303 0.96386 0.91758 1.01562 1.21129 0.92095 0.99175 1.12891 1.22734 1.00602 0.82528 1.03021 1.42006 1.06519 1.08097 1.56432 0.73445 1.20029 0.85411 0.92566 1.22496 1.17309 0.85395 0.83857 0.75713 1.90782 1.17278 1.83918 1.52355 1.45772 1.09812 1.05534 1.75622 1.19198 0.90370 0.77308 1.03513 1.21748 1.02358 1.06167 0.89327 1.23660 0.91639 0.97896 1.01957 1.47477 1.20671 1.31981 1.05753 1.23278 0.88294 0.94629 0.91459 0.81891 1.23053 0.97255 0.99950 0.95644 1.22185 0.90042 0.94806 0.95898 1.44887 1.35738 1.22869 1.31942 1.19938 1.03281 1.16970 1.03419 0.93033 1.26945 1.07930 0.97389 0.94233 1.70998 1.03163 1.45188 1.41309 0.83486 0.72299 0.75523 0.75453 1.25097 1.20515 1.18006 1.22168 0.99680 0.91162 0.87157 1.78185 1.18181 1.17568 0.93292 1.74988 1.02981 1.09937 1.26260 0.91927 0.89891 0.92264 0.81885 0.77024 0.76197 0.89461 0.90060 0.80002 0.88951 0.85033 0.95174 0.94775 0.94204 0.90141 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.18 9.83 71.24 0.70 -1.48 16 2 C -0.09 -2.32 6.21 -19.57 -0.12 -2.44 16 3 C -0.23 -4.37 10.76 22.01 0.24 -4.13 16 4 C 0.05 0.73 11.89 83.48 0.99 1.72 16 5 N -0.53 -9.96 5.99 -183.62 -1.10 -11.06 16 6 H 0.43 5.86 8.19 -92.70 -0.76 5.10 16 7 C -0.09 -2.46 7.06 40.35 0.28 -2.18 16 8 C 0.59 18.11 7.79 86.45 0.67 18.79 16 9 O -0.56 -20.84 14.80 -4.33 -0.06 -20.90 16 10 N -0.72 -19.49 5.54 -470.81 -2.61 -22.10 16 11 C 0.22 6.40 6.23 85.63 0.53 6.94 16 12 C -0.06 -1.75 6.62 41.60 0.28 -1.48 16 13 C 0.00 0.06 9.97 83.49 0.83 0.90 16 14 N -0.27 -7.54 3.40 -320.23 -1.09 -8.63 16 15 C 0.12 2.88 4.19 46.46 0.19 3.08 16 16 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.12 -2.69 6.64 31.78 0.21 -2.48 16 18 C 0.09 3.22 4.25 86.73 0.37 3.59 16 19 N -0.63 -24.71 2.17 -691.56 -1.50 -26.20 16 20 C -0.31 -15.73 10.35 84.03 0.87 -14.86 16 21 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 23 N -0.96 -58.91 13.70 21.65 0.30 -58.61 16 24 Si 1.10 49.14 24.53 68.60 1.68 50.82 16 25 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 26 H -0.28 -11.39 6.84 99.48 0.68 -10.71 16 27 H -0.25 -9.83 5.41 99.48 0.54 -9.29 16 28 C 0.12 3.68 6.23 86.93 0.54 4.22 16 29 N -0.09 -2.80 13.16 37.02 0.49 -2.31 16 30 N -0.27 -8.67 12.41 -48.60 -0.60 -9.27 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.06 1.70 6.49 -2.39 -0.02 1.68 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.40 9.39 7.59 -92.71 -0.70 8.68 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.18 6.78 6.82 -2.91 -0.02 6.76 16 40 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.03 1.13 6.73 -2.39 -0.02 1.12 16 43 H 0.03 1.23 3.87 -2.39 -0.01 1.22 16 44 H 0.25 15.39 8.73 -92.70 -0.81 14.58 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 Total: -1.00 -74.37 374.19 1.91 -72.46 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.65 Total: 29.05 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 7.06 Total: 6.75 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -6.11 Total: -138.19 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 1.68 Total: 50.82 kcal Total: -74.37 1.91 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999992871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.959 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds