Wall clock time and date at job start Wed Apr 1 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32453 * 125.18633 * 2 1 4 4 C 1.32870 * 109.81053 * 180.11400 * 3 2 1 5 5 N 1.33736 * 132.44450 * 179.24197 * 4 3 2 6 6 C 1.31206 * 121.20261 * 180.02562 * 5 4 3 7 7 C 1.40098 * 120.44831 * 0.02562 * 6 5 4 8 8 C 1.37003 * 119.05477 * 359.97438 * 7 6 5 9 9 C 1.47715 * 120.63712 * 180.02562 * 8 7 6 10 10 O 1.21558 * 120.00308 * 200.77922 * 9 8 7 11 11 N 1.34776 * 120.00041 * 20.77317 * 9 8 7 12 12 C 1.46504 * 119.99828 * 4.99551 * 11 9 8 13 13 C 1.46498 * 120.00575 * 184.99013 * 11 9 8 14 14 C 1.53033 * 109.46548 * 240.03312 * 13 11 9 15 15 C 1.53198 * 109.31467 * 178.59704 * 14 13 11 16 16 N 1.46928 * 108.76356 * 54.65459 * 15 14 13 17 17 C 1.36935 * 120.62840 * 126.40554 * 16 15 14 18 18 H 1.07996 * 120.00240 * 328.99462 * 17 16 15 19 19 C 1.38810 * 119.99670 * 149.00013 * 17 16 15 20 20 N 1.31615 * 120.00423 * 349.71214 * 19 17 16 21 21 Si 1.86806 * 119.99761 * 169.71395 * 19 17 16 22 22 H 1.48496 * 109.47202 * 89.99999 * 21 19 17 23 23 H 1.48505 * 109.46674 * 209.99987 * 21 19 17 24 24 H 1.48499 * 109.47189 * 329.99375 * 21 19 17 25 25 C 1.46927 * 118.73832 * 306.38334 * 16 15 14 26 26 C 1.53040 * 109.46138 * 119.97427 * 13 11 9 27 27 N 1.36689 * 107.18101 * 359.49528 * 4 3 2 28 28 N 1.31359 * 125.18420 * 179.34784 * 2 1 3 29 29 H 1.09003 * 109.47364 * 270.64655 * 1 2 3 30 30 H 1.08998 * 109.47314 * 30.65149 * 1 2 3 31 31 H 1.09004 * 109.47424 * 150.65248 * 1 2 3 32 32 H 1.08000 * 119.77654 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.47352 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47206 * 264.64889 * 12 11 9 35 35 H 1.08998 * 109.47065 * 24.65238 * 12 11 9 36 36 H 1.09003 * 109.46960 * 144.64849 * 12 11 9 37 37 H 1.08999 * 109.45584 * 0.02562 * 13 11 9 38 38 H 1.08998 * 109.49793 * 298.56319 * 14 13 11 39 39 H 1.08999 * 109.49794 * 58.66109 * 14 13 11 40 40 H 1.08998 * 109.59360 * 294.86708 * 15 14 13 41 41 H 1.08997 * 109.70050 * 174.50486 * 15 14 13 42 42 H 0.97000 * 120.00695 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58818 * 293.82526 * 25 16 15 44 44 H 1.08994 * 109.70305 * 173.46234 * 25 16 15 45 45 H 1.09007 * 109.49639 * 301.34457 * 26 13 11 46 46 H 1.08994 * 109.49542 * 61.40549 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2702 1.0825 0.0000 4 6 3.5513 0.7302 -0.0025 5 7 4.6832 1.4424 -0.0166 6 6 5.8562 0.8546 -0.0163 7 6 5.9499 -0.5432 -0.0016 8 6 4.7994 -1.2870 0.0129 9 6 4.8574 -2.7629 0.0292 10 8 3.8958 -3.4131 -0.3318 11 7 5.9766 -3.3888 0.4442 12 6 7.0949 -2.6100 0.9819 13 6 6.0749 -4.8479 0.3578 14 6 6.2900 -5.4284 1.7574 15 6 6.3572 -6.9562 1.6675 16 7 7.3940 -7.3272 0.6947 17 6 8.3975 -8.1924 1.0405 18 1 8.7537 -8.2267 2.0594 19 6 8.9571 -9.0251 0.0812 20 7 8.3962 -9.1332 -1.1046 21 14 10.5063 -9.9925 0.4732 22 1 10.1348 -11.3121 1.0439 23 1 11.2917 -10.1945 -0.7709 24 1 11.3241 -9.2397 1.4580 25 6 7.3331 -6.7527 -0.6562 26 6 7.2546 -5.2272 -0.5402 27 7 3.5944 -0.6360 0.0074 28 7 2.2638 -1.0735 0.0122 29 1 -0.3634 0.0116 1.0276 30 1 -0.3634 0.8841 -0.5239 31 1 -0.3634 -0.8958 -0.5037 32 1 6.7557 1.4522 -0.0282 33 1 6.9152 -1.0275 -0.0018 34 1 7.8166 -2.4152 0.1887 35 1 6.7229 -1.6638 1.3750 36 1 7.5771 -3.1714 1.7822 37 1 5.1537 -5.2495 -0.0645 38 1 7.2238 -5.0466 2.1700 39 1 5.4610 -5.1383 2.4029 40 1 5.3932 -7.3459 1.3407 41 1 6.6071 -7.3711 2.6439 42 1 8.7874 -9.7148 -1.7751 43 1 6.4487 -7.1259 -1.1725 44 1 8.2269 -7.0311 -1.2145 45 1 7.1123 -4.7939 -1.5302 46 1 8.1792 -4.8468 -0.1060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006289880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:20 Heat of formation + Delta-G solvation = 137.864152 kcal Electronic energy + Delta-G solvation = -30315.761345 eV Core-core repulsion = 26244.382601 eV Total energy + Delta-G solvation = -4071.378745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.16771 -41.67733 -39.91866 -39.06193 -36.93115 -35.77553 -34.56831 -33.38828 -32.33198 -31.72100 -31.18559 -30.02122 -28.34256 -27.56768 -26.15588 -25.11756 -23.91244 -23.83228 -22.55772 -21.16439 -20.54798 -19.73505 -19.31599 -18.73031 -18.23742 -17.91882 -17.52496 -16.98022 -16.59613 -16.32433 -15.72614 -15.41969 -15.21086 -14.89596 -14.82939 -14.78260 -14.60436 -14.39295 -14.16768 -14.07109 -13.93928 -13.54008 -13.37226 -13.21923 -13.04249 -12.95156 -12.67378 -12.52955 -12.50894 -12.11990 -11.99955 -11.92220 -11.78567 -11.50290 -11.43001 -11.35242 -10.92546 -10.70598 -10.57745 -10.09431 -9.80896 -8.67057 -7.86611 -5.38259 -1.15788 -0.46558 0.51317 1.09452 1.46882 1.50305 1.50963 1.58552 1.60100 2.12007 2.21964 2.51820 2.71769 2.90712 3.31080 3.41877 3.62883 3.64679 3.74829 3.83824 3.99363 3.99487 4.15245 4.27730 4.44629 4.54338 4.57239 4.60085 4.61358 4.66180 4.67305 4.71314 4.83757 4.85137 4.90564 4.99763 5.02858 5.10146 5.12257 5.21941 5.27311 5.38273 5.47819 5.65031 5.72478 6.06381 6.19009 6.41124 6.67118 6.72455 7.15382 7.83221 8.36966 9.19913 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002415 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.515748 B =11591.841688 C =12211.956875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.253 3.747 3 N -0.548 5.548 4 C 0.421 3.579 5 N -0.462 5.462 6 C 0.229 3.771 7 C -0.164 4.164 8 C 0.124 3.876 9 C 0.544 3.456 10 O -0.552 6.552 11 N -0.579 5.579 12 C 0.028 3.972 13 C 0.156 3.844 14 C -0.122 4.122 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.263 1.263 25 C 0.179 3.821 26 C -0.125 4.125 27 N -0.315 5.315 28 N -0.348 5.348 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.266 0.734 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.001 0.999 41 H 0.065 0.935 42 H 0.250 0.750 43 H -0.017 1.017 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 23.446 4.555 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 N -0.282 5.282 4 C 0.062 3.938 5 N -0.178 5.178 6 C 0.044 3.956 7 C -0.189 4.189 8 C 0.004 3.996 9 C 0.329 3.671 10 O -0.429 6.429 11 N -0.310 5.310 12 C -0.111 4.111 13 C 0.054 3.946 14 C -0.161 4.161 15 C 0.017 3.983 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.586 5.586 21 Si 0.798 3.202 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.188 1.188 25 C 0.053 3.947 26 C -0.165 4.165 27 N -0.096 5.096 28 N -0.181 5.181 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.282 0.718 33 H 0.260 0.740 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.001 0.999 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.362 23.506 4.269 24.007 hybrid contribution 0.375 -2.103 -0.302 2.158 sum -1.987 21.403 3.967 21.858 Atomic orbital electron populations 1.20445 0.79802 1.05727 1.05789 1.25516 1.00468 0.84213 0.92489 1.70635 0.97388 1.29353 1.30826 1.23204 0.94582 0.78255 0.97790 1.67964 0.96119 1.36551 1.17169 1.24904 0.95545 0.92064 0.83077 1.24074 0.99444 0.96014 0.99325 1.20747 0.83565 0.94136 1.01203 1.17975 0.83731 0.85860 0.79523 1.90892 1.36538 1.66813 1.48643 1.47901 1.15468 1.07549 1.60126 1.23141 0.88724 0.97697 1.01555 1.20938 0.99095 0.77436 0.97158 1.22171 1.02405 0.96421 0.95128 1.20994 0.90483 0.93208 0.93662 1.44307 1.27522 1.51544 1.09733 1.19531 1.10616 1.12914 0.95908 0.91013 1.25950 1.02803 0.98761 0.97059 1.70142 1.41210 1.41136 1.06115 0.85232 0.79445 0.78558 0.76917 1.21671 1.22084 1.18787 1.20563 0.98814 0.88981 0.86362 1.22306 0.97791 0.97714 0.98683 1.48696 1.06122 1.08969 1.45831 1.78908 0.84154 1.21703 1.33333 0.87375 0.87283 0.88710 0.71821 0.73984 0.87223 0.86968 0.88905 0.92103 0.89511 0.91640 0.98101 0.91673 0.94105 0.99858 0.91518 0.91919 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.51 71.23 0.75 -0.30 16 2 C 0.25 7.33 8.09 138.68 1.12 8.45 16 3 N -0.55 -16.74 11.24 -191.25 -2.15 -18.89 16 4 C 0.42 11.83 9.00 261.61 2.35 14.18 16 5 N -0.46 -9.04 10.45 -197.69 -2.07 -11.10 16 6 C 0.23 1.64 11.26 85.24 0.96 2.60 16 7 C -0.16 -1.52 7.64 22.43 0.17 -1.35 16 8 C 0.12 2.86 6.51 40.56 0.26 3.13 16 9 C 0.54 15.90 7.60 86.75 0.66 16.56 16 10 O -0.55 -22.46 15.66 -3.90 -0.06 -22.52 16 11 N -0.58 -13.48 2.76 -826.02 -2.28 -15.76 16 12 C 0.03 0.29 7.79 127.77 1.00 1.28 16 13 C 0.16 4.91 2.48 45.02 0.11 5.03 16 14 C -0.12 -3.70 5.29 30.67 0.16 -3.54 16 15 C 0.14 5.70 6.52 86.36 0.56 6.27 16 16 N -0.61 -29.00 2.99 -699.10 -2.09 -31.08 16 17 C -0.26 -13.48 9.59 84.03 0.81 -12.68 16 18 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 19 C -0.05 -2.72 5.06 84.86 0.43 -2.29 16 20 N -0.94 -54.32 11.00 21.65 0.24 -54.08 16 21 Si 0.97 42.85 29.57 68.60 2.03 44.88 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 C 0.18 8.29 5.25 86.36 0.45 8.74 16 26 C -0.13 -4.14 5.34 30.67 0.16 -3.97 16 27 N -0.32 -9.44 3.92 -187.16 -0.73 -10.18 16 28 N -0.35 -11.97 12.02 -51.45 -0.62 -12.59 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.27 -1.74 8.06 -2.91 -0.02 -1.76 16 33 H 0.24 0.05 4.10 -2.91 -0.01 0.04 16 34 H 0.11 0.42 7.25 -2.39 -0.02 0.40 16 35 H 0.11 0.52 4.94 -2.39 -0.01 0.51 16 36 H 0.09 0.96 6.48 -2.39 -0.02 0.95 16 37 H 0.06 2.42 6.91 -2.39 -0.02 2.40 16 38 H 0.09 2.29 6.76 -2.39 -0.02 2.28 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 42 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 43 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 44 H 0.07 3.47 6.06 -2.39 -0.01 3.45 16 45 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.08 2.42 7.72 -2.39 -0.02 2.40 16 Total: -1.00 -89.77 368.21 3.26 -86.51 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.03 Total: 2.73 kcal Atomic # 6 Polarization: 32.13 SS G_CDS: 9.96 Total: 42.09 kcal Atomic # 7 Polarization: -143.99 SS G_CDS: -9.70 Total: -153.69 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -89.77 3.26 -86.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006289880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.373 kcal (2) G-P(sol) polarization free energy of solvation -89.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds