Wall clock time and date at job start Wed Apr 1 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35679 * 120.48616 * 2 1 4 4 C 1.40172 * 119.26734 * 179.97438 * 3 2 1 5 5 N 1.31258 * 120.36147 * 0.02789 * 4 3 2 6 6 C 1.33986 * 120.87739 * 359.97438 * 5 4 3 7 7 N 1.32501 * 132.34416 * 180.29889 * 6 5 4 8 8 C 1.33463 * 109.75668 * 180.10755 * 7 6 5 9 9 C 1.48125 * 125.32456 * 179.88236 * 8 7 6 10 10 O 1.21527 * 120.00289 * 179.69056 * 9 8 7 11 11 N 1.34774 * 120.00210 * 359.68620 * 9 8 7 12 12 C 1.46499 * 120.00141 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47178 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51960 * 305.08379 * 13 12 11 15 15 C 1.53038 * 109.50110 * 185.00202 * 13 12 11 16 16 C 1.53036 * 109.54003 * 178.68265 * 15 13 12 17 17 C 1.53192 * 109.31293 * 61.36202 * 16 15 13 18 18 N 1.46924 * 108.77591 * 305.36430 * 17 16 15 19 19 C 1.36939 * 120.62993 * 233.58522 * 18 17 16 20 20 H 1.08002 * 119.99754 * 151.83452 * 19 18 17 21 21 C 1.38804 * 119.99958 * 331.83412 * 19 18 17 22 22 N 1.31622 * 120.00247 * 343.08098 * 21 19 18 23 23 Si 1.86810 * 119.99877 * 163.08052 * 21 19 18 24 24 H 1.48493 * 109.47005 * 90.00021 * 23 21 19 25 25 H 1.48501 * 109.47040 * 209.99959 * 23 21 19 26 26 H 1.48500 * 109.46752 * 329.99813 * 23 21 19 27 27 C 1.46920 * 118.73855 * 53.86375 * 18 17 16 28 28 N 1.31985 * 109.35374 * 359.61045 * 8 7 6 29 29 N 1.36165 * 120.48097 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47410 * 269.99728 * 1 2 3 31 31 H 1.09007 * 109.46905 * 29.99469 * 1 2 3 32 32 H 1.08996 * 109.47438 * 149.98964 * 1 2 3 33 33 H 1.07995 * 120.36685 * 359.97438 * 3 2 1 34 34 H 1.08007 * 119.81529 * 179.97438 * 4 3 2 35 35 H 0.97003 * 119.99813 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47340 * 60.00547 * 12 11 9 37 37 H 1.09003 * 109.47133 * 299.99741 * 12 11 9 38 38 H 1.08998 * 109.46122 * 58.65861 * 15 13 12 39 39 H 1.09004 * 109.44451 * 298.69553 * 15 13 12 40 40 H 1.08996 * 109.49733 * 301.41024 * 16 15 13 41 41 H 1.09005 * 109.52294 * 181.33131 * 16 15 13 42 42 H 1.09001 * 109.58625 * 185.57745 * 17 16 15 43 43 H 1.08997 * 109.70196 * 65.22177 * 17 16 15 44 44 H 0.97001 * 120.00021 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58855 * 65.92358 * 27 18 17 46 46 H 1.08998 * 109.58990 * 186.35233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1394 0.0005 5 7 4.2360 -0.0070 0.0005 6 6 3.5664 -1.1676 0.0004 7 7 3.9687 -2.4301 0.0055 8 6 2.9090 -3.2413 0.0004 9 6 2.9635 -4.7215 0.0013 10 8 1.9341 -5.3675 0.0020 11 7 4.1546 -5.3520 0.0011 12 6 4.2085 -6.8160 0.0014 13 6 5.6688 -7.2727 0.0018 14 1 6.1929 -6.8179 -0.8389 15 6 5.7276 -8.7968 -0.1237 16 6 7.1884 -9.2518 -0.1564 17 6 7.8743 -8.8476 1.1523 18 7 7.6966 -7.4030 1.3529 19 6 8.7770 -6.5912 1.5740 20 1 8.7419 -5.5530 1.2783 21 6 9.9173 -7.1026 2.1780 22 7 9.8601 -8.2428 2.8330 23 14 11.5332 -6.1725 2.0613 24 1 11.6483 -5.2346 3.2068 25 1 12.6626 -7.1362 2.0952 26 1 11.5732 -5.4075 0.7891 27 6 6.3372 -6.8469 1.3179 28 7 1.8047 -2.5183 0.0005 29 7 2.1977 -1.1735 -0.0005 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8898 -0.5140 33 1 1.6694 2.1124 -0.0004 34 1 4.1536 2.0649 0.0001 35 1 4.9763 -4.8365 0.0009 36 1 3.7083 -7.1982 -0.8885 37 1 3.7086 -7.1979 0.8916 38 1 5.2306 -9.1048 -1.0436 39 1 5.2248 -9.2509 0.7302 40 1 7.6981 -8.7785 -0.9956 41 1 7.2300 -10.3351 -0.2696 42 1 8.9376 -9.0804 1.0946 43 1 7.4262 -9.3899 1.9848 44 1 10.6570 -8.6000 3.2554 45 1 5.7640 -7.2296 2.1624 46 1 6.3858 -5.7592 1.3695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023736254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:40 Heat of formation + Delta-G solvation = 95.552882 kcal Electronic energy + Delta-G solvation = -29335.177836 eV Core-core repulsion = 25261.964337 eV Total energy + Delta-G solvation = -4073.213499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.17624 -41.14525 -39.84065 -39.25164 -36.48274 -36.32238 -34.76623 -33.10583 -32.29629 -32.24089 -31.88271 -29.52218 -27.86719 -27.20848 -25.64349 -25.25992 -23.83058 -23.18611 -22.45149 -21.67116 -20.68661 -19.81860 -19.32777 -18.67950 -18.24156 -18.06751 -17.06871 -16.85740 -16.61152 -16.54371 -15.82991 -15.54334 -15.24174 -15.15966 -15.03332 -14.58877 -14.51464 -14.40213 -14.02453 -13.97430 -13.83445 -13.76684 -13.60347 -13.34910 -13.01645 -12.88484 -12.66490 -12.51597 -12.28367 -11.98147 -11.83576 -11.82828 -11.64649 -11.55453 -11.23604 -11.11337 -11.08940 -10.99399 -10.53339 -10.29179 -9.95740 -8.66534 -7.86839 -5.32668 -0.78024 -0.53753 0.51428 0.52920 1.46250 1.47205 1.57740 1.59646 1.87101 2.13080 2.28850 2.51374 2.81755 3.18549 3.27486 3.28671 3.57732 3.81992 3.96373 3.98941 4.05220 4.08956 4.26574 4.41874 4.42590 4.49018 4.54632 4.55061 4.57181 4.68444 4.74082 4.84442 4.89486 4.95642 4.97853 5.10784 5.11959 5.12170 5.22233 5.29749 5.35442 5.43182 5.57707 5.67648 5.80289 6.05117 6.25903 6.40004 6.54418 6.78789 7.15863 7.86841 8.38327 9.19110 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002577 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.585380 B =10861.557358 C =12833.817738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.222 3.778 5 N -0.493 5.493 6 C 0.428 3.572 7 N -0.534 5.534 8 C 0.225 3.775 9 C 0.611 3.389 10 O -0.541 6.541 11 N -0.688 5.688 12 C 0.135 3.865 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.095 4.095 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.150 3.850 28 N -0.293 5.293 29 N -0.329 5.329 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.245 0.755 35 H 0.417 0.583 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.051 0.949 43 H -0.005 1.005 44 H 0.250 0.750 45 H 0.010 0.990 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 22.113 -9.113 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.210 4.210 4 C 0.040 3.960 5 N -0.210 5.210 6 C 0.068 3.932 7 N -0.269 5.269 8 C -0.059 4.059 9 C 0.392 3.608 10 O -0.416 6.416 11 N -0.339 5.339 12 C 0.012 3.988 13 C -0.122 4.122 14 H 0.094 0.906 15 C -0.133 4.133 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.025 3.975 28 N -0.128 5.128 29 N -0.111 5.111 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.261 0.739 35 H 0.254 0.746 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.013 0.987 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.067 20.699 -9.023 30.209 hybrid contribution 0.898 0.380 0.537 1.113 sum -19.170 21.079 -8.486 29.729 Atomic orbital electron populations 1.21225 0.83989 1.06539 1.05864 1.21985 0.98672 0.81093 0.92946 1.22633 0.95064 0.98782 1.04565 1.24761 0.93232 0.95612 0.82356 1.68231 1.37194 0.95551 1.20062 1.22904 0.79171 0.93941 0.97153 1.70721 1.28981 0.97907 1.29336 1.23991 0.86519 0.96598 0.98776 1.16372 0.84500 0.82313 0.77659 1.90804 1.34305 1.65585 1.50886 1.45833 1.07673 1.08856 1.71540 1.21581 0.97045 0.76960 1.03232 1.21821 0.93284 0.97806 0.99280 0.90554 1.21333 0.96354 0.93159 1.02454 1.21997 0.96252 1.00296 0.98343 1.20656 0.98942 0.83064 0.92664 1.44309 1.01486 1.04344 1.83079 1.19493 0.93342 0.94350 1.32073 0.91798 1.25797 1.02538 0.98901 0.97397 1.70194 1.28465 1.22741 1.36705 0.85307 0.79589 0.77660 0.78100 1.21243 1.21697 1.19499 1.21115 0.85555 0.96592 0.94268 1.78670 1.19540 0.84630 1.29992 1.49124 1.09223 1.06419 1.46290 0.87600 0.84004 0.91497 0.74647 0.73890 0.74625 0.89293 0.91024 0.89644 0.92184 0.92916 0.90910 0.93024 0.98724 0.94130 0.97219 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.13 71.24 0.72 0.09 16 2 C 0.17 1.97 6.86 41.29 0.28 2.25 16 3 C -0.19 -0.49 9.72 22.15 0.22 -0.27 16 4 C 0.22 1.56 11.27 85.25 0.96 2.52 16 5 N -0.49 -10.60 10.48 -197.53 -2.07 -12.67 16 6 C 0.43 12.18 8.99 261.57 2.35 14.53 16 7 N -0.53 -18.24 10.89 -192.63 -2.10 -20.33 16 8 C 0.22 7.68 7.92 137.40 1.09 8.77 16 9 C 0.61 21.13 7.84 86.87 0.68 21.81 16 10 O -0.54 -20.77 17.07 -3.80 -0.06 -20.83 16 11 N -0.69 -21.70 5.33 -465.69 -2.48 -24.18 16 12 C 0.13 3.97 5.07 86.38 0.44 4.40 16 13 C -0.10 -3.36 2.39 -10.57 -0.03 -3.39 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 15 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 16 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 17 C 0.17 8.50 5.30 86.36 0.46 8.95 16 18 N -0.61 -31.48 2.99 -698.28 -2.09 -33.57 16 19 C -0.26 -14.92 9.58 84.03 0.81 -14.12 16 20 H 0.06 3.57 7.89 -2.91 -0.02 3.55 16 21 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 22 N -0.93 -56.79 11.20 21.65 0.24 -56.54 16 23 Si 0.97 46.22 29.59 68.60 2.03 48.25 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.15 6.43 5.63 86.51 0.49 6.91 16 28 N -0.29 -9.23 12.67 -52.61 -0.67 -9.89 16 29 N -0.33 -7.99 3.91 -185.77 -0.73 -8.71 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.14 -0.51 8.09 -2.38 -0.02 -0.53 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.24 -2.27 8.06 -2.91 -0.02 -2.30 16 34 H 0.25 -1.01 8.06 -2.91 -0.02 -1.03 16 35 H 0.42 13.31 7.39 -92.71 -0.69 12.63 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 Total: -1.00 -87.61 382.85 1.63 -85.98 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.33 Total: 10.02 kcal Atomic # 6 Polarization: 33.27 SS G_CDS: 9.22 Total: 42.50 kcal Atomic # 7 Polarization: -156.02 SS G_CDS: -9.89 Total: -165.91 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -87.61 1.63 -85.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023736254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.531 kcal (2) G-P(sol) polarization free energy of solvation -87.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds