Wall clock time and date at job start Wed Apr 1 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40177 * 120.36042 * 2 1 4 4 N 1.31252 * 120.35336 * 180.02562 * 3 2 1 5 5 C 1.33991 * 120.88423 * 0.02562 * 4 3 2 6 6 N 1.32498 * 132.34103 * 179.97438 * 5 4 3 7 7 C 1.33468 * 109.75127 * 180.02562 * 6 5 4 8 8 C 1.48128 * 125.32156 * 180.02562 * 7 6 5 9 9 O 1.21524 * 120.00020 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99950 * 359.97438 * 8 7 6 11 11 C 1.46506 * 119.99886 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46987 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.58591 * 59.77825 * 12 11 10 14 14 C 1.53188 * 109.58589 * 180.02562 * 12 11 10 15 15 C 1.53045 * 109.31366 * 174.42248 * 14 12 11 16 16 C 1.53033 * 109.53530 * 298.63379 * 15 14 12 17 17 C 1.53195 * 109.31301 * 61.36844 * 16 15 14 18 18 N 1.46923 * 109.58553 * 299.35128 * 12 11 10 19 19 C 1.36933 * 120.63239 * 6.61992 * 18 12 11 20 20 H 1.07997 * 119.99963 * 328.83139 * 19 18 12 21 21 C 1.38816 * 119.99513 * 148.82541 * 19 18 12 22 22 N 1.31620 * 119.99611 * 162.48823 * 21 19 18 23 23 Si 1.86797 * 120.00533 * 342.48480 * 21 19 18 24 24 H 1.48504 * 109.46864 * 90.00011 * 23 21 19 25 25 H 1.48498 * 109.47506 * 210.00506 * 23 21 19 26 26 H 1.48509 * 109.46812 * 330.01040 * 23 21 19 27 27 N 1.31987 * 109.35428 * 359.97438 * 7 6 5 28 28 N 1.36871 * 120.22146 * 0.02562 * 5 4 3 29 29 C 1.35681 * 120.36607 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46733 * 269.97242 * 1 2 3 31 31 H 1.08997 * 109.47388 * 29.97505 * 1 2 3 32 32 H 1.09000 * 109.46897 * 149.98095 * 1 2 3 33 33 H 1.07997 * 119.82182 * 0.02562 * 3 2 1 34 34 H 0.96999 * 120.00684 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46785 * 299.99223 * 11 10 8 36 36 H 1.08991 * 109.47250 * 59.99111 * 11 10 8 37 37 H 1.09009 * 109.49960 * 294.37621 * 14 12 11 38 38 H 1.09000 * 109.50148 * 54.43739 * 14 12 11 39 39 H 1.08998 * 109.45697 * 58.65528 * 15 14 12 40 40 H 1.09003 * 109.45484 * 178.62935 * 15 14 12 41 41 H 1.09006 * 109.49644 * 181.31435 * 16 15 14 42 42 H 1.09003 * 109.50298 * 301.41039 * 16 15 14 43 43 H 1.09000 * 109.58649 * 65.14859 * 17 16 15 44 44 H 1.09004 * 109.58475 * 185.43685 * 17 16 15 45 45 H 0.97001 * 120.00329 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.48484 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2095 0.0000 4 7 3.5281 1.2094 -0.0005 5 6 4.2157 0.0594 -0.0015 6 7 5.5142 -0.2040 -0.0027 7 6 5.7066 -1.5247 -0.0040 8 6 7.0261 -2.1980 -0.0049 9 8 7.0889 -3.4116 -0.0056 10 7 8.1568 -1.4646 -0.0050 11 6 9.4618 -2.1305 -0.0065 12 6 10.5717 -1.0774 -0.0069 13 1 10.4818 -0.4514 0.8809 14 6 11.9376 -1.7710 -0.0092 15 6 13.0395 -0.7183 -0.1500 16 6 12.8722 0.0232 -1.4782 17 6 11.5168 0.7372 -1.4926 18 7 10.4609 -0.2456 -1.2129 19 6 9.3943 -0.3840 -2.0604 20 1 8.9185 -1.3465 -2.1769 21 6 8.9246 0.7129 -2.7697 22 7 8.1507 0.5355 -3.8195 23 14 9.3907 2.4408 -2.2345 24 1 10.6445 2.8492 -2.9175 25 1 8.3006 3.3821 -2.5961 26 1 9.5978 2.4645 -0.7641 27 7 4.5374 -2.1371 -0.0031 28 7 3.5542 -1.1389 -0.0026 29 6 2.1929 -1.1707 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6785 2.1465 0.0004 34 1 8.1067 -0.4959 -0.0048 35 1 9.5525 -2.7541 0.8830 36 1 9.5512 -2.7526 -0.8970 37 1 12.0712 -2.3146 0.9262 38 1 11.9905 -2.4678 -0.8457 39 1 12.9704 -0.0079 0.6738 40 1 14.0136 -1.2070 -0.1274 41 1 13.6709 0.7568 -1.5884 42 1 12.9165 -0.6900 -2.3012 43 1 11.5047 1.5135 -0.7276 44 1 11.3509 1.1863 -2.4718 45 1 7.8221 1.3019 -4.3150 46 1 1.6669 -2.1139 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024499248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:34 Heat of formation + Delta-G solvation = 107.359503 kcal Electronic energy + Delta-G solvation = -30520.849339 eV Core-core repulsion = 26448.147814 eV Total energy + Delta-G solvation = -4072.701525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.14264 -41.10262 -40.01696 -39.36130 -36.05074 -35.79462 -34.87990 -34.14692 -32.64422 -32.36353 -32.07558 -28.86368 -27.67154 -26.74069 -26.09245 -24.51039 -24.27784 -23.99244 -22.24606 -21.60131 -20.86732 -19.88240 -19.17864 -18.74531 -18.07963 -17.94546 -17.35492 -17.08061 -16.73327 -16.61990 -15.78765 -15.32197 -15.24141 -15.15826 -15.03925 -14.78573 -14.55018 -14.36986 -14.32103 -13.77104 -13.75464 -13.67715 -13.60805 -13.23065 -13.06354 -13.00349 -12.82620 -12.54521 -12.31396 -11.96593 -11.74536 -11.67315 -11.59963 -11.53182 -11.20304 -11.14924 -11.09787 -10.84098 -10.62430 -10.08005 -9.89095 -8.78880 -8.10499 -5.45547 -0.77307 -0.55713 0.56771 0.59187 1.29474 1.43555 1.49603 1.68921 1.95325 2.18876 2.29379 2.45471 2.86103 3.10280 3.27591 3.31630 3.37286 3.73346 3.86891 3.93465 4.09903 4.16107 4.19383 4.32446 4.42730 4.45597 4.51012 4.60829 4.66936 4.78116 4.82388 4.88832 4.94213 4.95322 5.00534 5.05709 5.07891 5.18687 5.24553 5.29169 5.33427 5.39426 5.42057 5.64693 5.94061 6.14037 6.22919 6.31934 6.59236 6.94348 6.96693 7.67515 8.07557 9.08833 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003420 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.716841 B = 8184.174996 C = 9425.700350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.150 4.150 3 C 0.219 3.781 4 N -0.482 5.482 5 C 0.417 3.583 6 N -0.528 5.528 7 C 0.230 3.770 8 C 0.602 3.398 9 O -0.555 6.555 10 N -0.661 5.661 11 C 0.133 3.867 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.130 4.130 17 C 0.119 3.881 18 N -0.617 5.617 19 C -0.230 4.230 20 H 0.055 0.945 21 C -0.023 4.023 22 N -0.956 5.956 23 Si 0.940 3.060 24 H -0.277 1.277 25 H -0.324 1.324 26 H -0.258 1.258 27 N -0.296 5.296 28 N -0.324 5.324 29 C 0.134 3.866 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.416 0.584 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.255 0.745 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 1.207 12.370 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.035 3.965 4 N -0.198 5.198 5 C 0.057 3.943 6 N -0.263 5.263 7 C -0.054 4.054 8 C 0.382 3.618 9 O -0.433 6.433 10 N -0.311 5.311 11 C 0.011 3.989 12 C 0.054 3.946 13 H 0.071 0.929 14 C -0.161 4.161 15 C -0.141 4.141 16 C -0.169 4.169 17 C -0.006 4.006 18 N -0.343 5.343 19 C -0.360 4.360 20 H 0.073 0.927 21 C -0.218 4.218 22 N -0.603 5.603 23 Si 0.771 3.229 24 H -0.204 1.204 25 H -0.254 1.254 26 H -0.182 1.182 27 N -0.132 5.132 28 N -0.105 5.105 29 C 0.000 4.000 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.259 0.741 34 H 0.254 0.746 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.319 0.495 12.280 16.708 hybrid contribution -0.542 0.754 -0.733 1.182 sum -11.861 1.249 11.547 16.600 Atomic orbital electron populations 1.20854 0.82793 1.06168 1.05276 1.21282 1.01550 0.90211 1.02694 1.24711 0.86428 1.01793 0.83542 1.68192 1.11321 1.21394 1.18888 1.22823 0.89143 0.84237 0.98085 1.70739 1.13237 1.14123 1.28211 1.24048 0.95135 0.88021 0.98172 1.16445 0.81616 0.85543 0.78189 1.90733 1.86735 1.13224 1.52589 1.45799 1.04643 1.11546 1.69063 1.21583 0.80239 0.95323 1.01784 1.21025 0.93662 0.90998 0.88891 0.92853 1.21898 0.93523 0.98109 1.02574 1.21372 0.98499 0.97633 0.96554 1.21930 0.96348 0.99854 0.98737 1.21425 0.89166 0.91788 0.98187 1.44532 1.21969 1.43619 1.24213 1.18685 1.06633 0.93963 1.16683 0.92691 1.25838 0.97644 1.00874 0.97482 1.69950 1.39972 1.30713 1.19625 0.86027 0.75350 0.81871 0.79661 1.20389 1.25379 1.18206 1.78668 0.95432 1.08397 1.30711 1.49061 1.08366 1.07512 1.45536 1.22994 0.77295 1.04433 0.95281 0.87946 0.87572 0.89208 0.74056 0.74577 0.88762 0.93096 0.88964 0.92722 0.91451 0.90011 0.90527 0.93167 0.94981 0.93800 0.93642 0.76714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.03 10.03 71.24 0.71 0.68 16 2 C -0.15 -1.71 5.87 -19.98 -0.12 -1.83 16 3 C 0.22 3.42 10.96 85.25 0.93 4.36 16 4 N -0.48 -14.87 10.48 -197.54 -2.07 -16.94 16 5 C 0.42 16.22 8.99 261.57 2.35 18.57 16 6 N -0.53 -24.73 10.89 -192.62 -2.10 -26.82 16 7 C 0.23 10.72 7.92 137.40 1.09 11.81 16 8 C 0.60 28.65 7.84 86.87 0.68 29.33 16 9 O -0.56 -27.79 17.07 -3.79 -0.06 -27.85 16 10 N -0.66 -29.70 3.86 -465.69 -1.80 -31.50 16 11 C 0.13 5.23 4.43 86.38 0.38 5.61 16 12 C 0.16 5.84 3.00 44.97 0.14 5.97 16 13 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 14 C -0.12 -3.50 5.37 30.67 0.16 -3.34 16 15 C -0.10 -2.70 5.88 30.62 0.18 -2.52 16 16 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16 17 C 0.12 4.93 4.19 86.36 0.36 5.30 16 18 N -0.62 -28.06 2.72 -675.19 -1.83 -29.90 16 19 C -0.23 -12.83 7.45 84.04 0.63 -12.20 16 20 H 0.06 3.45 6.05 -2.91 -0.02 3.43 16 21 C -0.02 -1.39 5.26 84.86 0.45 -0.95 16 22 N -0.96 -62.46 13.97 21.65 0.30 -62.16 16 23 Si 0.94 48.54 24.34 68.60 1.67 50.21 16 24 H -0.28 -13.47 6.57 99.48 0.65 -12.82 16 25 H -0.32 -17.60 7.11 99.48 0.71 -16.89 16 26 H -0.26 -12.59 6.72 99.48 0.67 -11.92 16 27 N -0.30 -12.50 12.78 -52.60 -0.67 -13.17 16 28 N -0.32 -10.92 3.91 -197.58 -0.77 -11.69 16 29 C 0.13 2.54 10.97 83.43 0.92 3.46 16 30 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.11 -0.32 8.10 -2.39 -0.02 -0.34 16 32 H 0.09 -0.08 8.09 -2.39 -0.02 -0.10 16 33 H 0.24 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.42 19.91 7.10 -92.71 -0.66 19.25 16 35 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.05 2.25 7.39 -2.39 -0.02 2.23 16 37 H 0.09 2.06 8.14 -2.38 -0.02 2.05 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.03 1.29 7.03 -2.39 -0.02 1.27 16 44 H 0.04 2.06 4.73 -2.39 -0.01 2.05 16 45 H 0.25 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -91.22 370.85 1.99 -89.24 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.28 Total: 20.34 kcal Atomic # 6 Polarization: 51.21 SS G_CDS: 9.05 Total: 60.26 kcal Atomic # 7 Polarization: -183.25 SS G_CDS: -8.94 Total: -192.19 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.67 Total: 50.21 kcal Total: -91.22 1.99 -89.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024499248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.595 kcal (2) G-P(sol) polarization free energy of solvation -91.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds