Wall clock time and date at job start Wed Apr 1 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40172 * 120.36593 * 2 1 4 4 N 1.31261 * 120.35831 * 180.02562 * 3 2 1 5 5 C 1.33987 * 120.87986 * 0.02562 * 4 3 2 6 6 N 1.32497 * 132.34535 * 180.36363 * 5 4 3 7 7 C 1.33467 * 109.75584 * 180.10071 * 6 5 4 8 8 C 1.48129 * 125.32875 * 179.82084 * 7 6 5 9 9 O 1.21521 * 120.00302 * 179.69257 * 8 7 6 10 10 N 1.34783 * 119.99651 * 359.69036 * 8 7 6 11 11 C 1.46492 * 119.99852 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46928 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.70002 * 299.75110 * 12 11 10 14 14 C 1.52767 * 109.50708 * 179.63446 * 12 11 10 15 15 C 1.53040 * 109.38037 * 185.70473 * 14 12 11 16 16 C 1.53038 * 109.53840 * 61.24084 * 15 14 12 17 17 C 1.53191 * 109.31462 * 298.63157 * 16 15 14 18 18 N 1.46922 * 109.58598 * 60.10899 * 12 11 10 19 19 C 1.36936 * 120.63371 * 353.41706 * 18 12 11 20 20 H 1.08004 * 119.99738 * 32.50479 * 19 18 12 21 21 C 1.38813 * 119.99916 * 212.22852 * 19 18 12 22 22 N 1.31615 * 120.00400 * 10.34564 * 21 19 18 23 23 Si 1.86800 * 119.99737 * 190.34592 * 21 19 18 24 24 H 1.48499 * 109.47040 * 59.99804 * 23 21 19 25 25 H 1.48493 * 109.47342 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47027 * 300.00187 * 23 21 19 27 27 N 1.31994 * 109.35011 * 359.55263 * 7 6 5 28 28 N 1.36869 * 120.22488 * 359.97438 * 5 4 3 29 29 C 1.35684 * 120.36235 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47468 * 269.98217 * 1 2 3 31 31 H 1.09000 * 109.46535 * 29.97727 * 1 2 3 32 32 H 1.08995 * 109.47167 * 149.97329 * 1 2 3 33 33 H 1.07994 * 119.82303 * 0.04485 * 3 2 1 34 34 H 0.97001 * 120.00026 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47646 * 60.00259 * 11 10 8 36 36 H 1.09007 * 109.47258 * 299.99624 * 11 10 8 37 37 H 1.09001 * 109.56095 * 65.67288 * 14 12 11 38 38 H 1.08997 * 109.38932 * 305.63212 * 14 12 11 39 39 H 1.09004 * 109.46216 * 301.21897 * 15 14 12 40 40 H 1.09003 * 109.44715 * 181.25381 * 15 14 12 41 41 H 1.09004 * 109.49790 * 178.68211 * 16 15 14 42 42 H 1.08996 * 109.49866 * 58.58779 * 16 15 14 43 43 H 1.08995 * 109.58582 * 294.85149 * 17 16 15 44 44 H 1.09004 * 109.70321 * 174.48901 * 17 16 15 45 45 H 0.96995 * 120.00447 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.48440 * 359.95980 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2092 -0.0005 5 6 4.2157 0.0592 -0.0015 6 7 5.5142 -0.2043 0.0040 7 6 5.7065 -1.5251 -0.0024 8 6 7.0258 -2.1986 -0.0029 9 8 7.0885 -3.4122 -0.0034 10 7 8.1567 -1.4654 -0.0028 11 6 9.4615 -2.1314 -0.0038 12 6 10.5716 -1.0784 -0.0027 13 1 10.4875 -0.4551 -0.8929 14 6 11.9326 -1.7721 0.0054 15 6 13.0368 -0.7223 0.1499 16 6 12.8644 0.0226 1.4756 17 6 11.5112 0.7405 1.4812 18 7 10.4544 -0.2404 1.1983 19 6 9.3835 -0.3748 2.0412 20 1 8.9210 -1.3414 2.1767 21 6 8.8961 0.7301 2.7257 22 7 9.3229 1.9363 2.4173 23 14 7.6343 0.5049 4.0846 24 1 8.2047 -0.3556 5.1520 25 1 7.2777 1.8293 4.6535 26 1 6.4169 -0.1383 3.5280 27 7 4.5371 -2.1373 -0.0025 28 7 3.5542 -1.1390 -0.0016 29 6 2.1928 -1.1707 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6787 2.1465 0.0007 34 1 8.1067 -0.4966 -0.0020 35 1 9.5512 -2.7536 -0.8942 36 1 9.5519 -2.7549 0.8858 37 1 12.0696 -2.3180 -0.9281 38 1 11.9795 -2.4672 0.8437 39 1 12.9743 -0.0134 -0.6758 40 1 14.0095 -1.2141 0.1335 41 1 13.6647 0.7540 1.5886 42 1 12.9022 -0.6890 2.3003 43 1 11.5054 1.5152 0.7145 44 1 11.3387 1.1919 2.4582 45 1 8.9820 2.7084 2.8953 46 1 1.6667 -2.1139 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024499249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:38 Heat of formation + Delta-G solvation = 105.168833 kcal Electronic energy + Delta-G solvation = -30546.053982 eV Core-core repulsion = 26473.257462 eV Total energy + Delta-G solvation = -4072.796520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.17093 -41.08908 -39.97150 -39.22855 -36.01707 -35.77802 -34.91784 -34.16463 -32.43240 -32.09986 -31.68884 -28.83855 -27.63631 -26.82567 -26.14171 -24.54803 -24.01712 -23.76361 -22.27394 -21.52480 -20.69718 -19.90050 -19.19990 -18.72352 -18.04967 -17.87424 -17.35131 -17.07563 -16.63646 -16.25241 -15.80949 -15.50549 -15.22779 -15.04700 -14.82157 -14.61502 -14.50120 -14.38678 -14.07403 -13.78087 -13.66179 -13.64227 -13.51528 -13.07169 -12.97755 -12.91006 -12.81065 -12.59986 -12.38250 -12.09563 -11.80605 -11.70197 -11.58545 -11.49358 -11.13802 -11.08656 -11.02752 -10.86703 -10.54600 -10.06024 -9.91340 -8.52905 -7.85999 -5.32648 -0.79906 -0.58519 0.54191 0.56956 1.30051 1.33696 1.37160 1.68945 1.92089 2.17156 2.26253 2.43707 2.85300 3.24185 3.31280 3.35751 3.59315 3.71539 3.91236 3.96031 4.14356 4.25114 4.28658 4.42585 4.43591 4.54972 4.62005 4.69925 4.76809 4.80435 4.88189 4.93236 4.98389 5.02040 5.04247 5.15699 5.25229 5.27533 5.31778 5.39572 5.47585 5.49833 5.64442 5.73822 5.88163 6.12456 6.32016 6.44285 6.58454 6.93739 7.19825 7.88065 8.40413 9.18530 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.003445 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.659255 B = 8125.009440 C = 9175.727011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.150 4.150 3 C 0.219 3.781 4 N -0.483 5.483 5 C 0.416 3.584 6 N -0.528 5.528 7 C 0.227 3.773 8 C 0.599 3.401 9 O -0.554 6.554 10 N -0.661 5.661 11 C 0.135 3.865 12 C 0.158 3.842 13 H 0.033 0.967 14 C -0.120 4.120 15 C -0.102 4.102 16 C -0.134 4.134 17 C 0.178 3.822 18 N -0.601 5.601 19 C -0.236 4.236 20 H 0.056 0.944 21 C -0.021 4.021 22 N -0.917 5.917 23 Si 0.933 3.067 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.306 1.306 27 N -0.295 5.295 28 N -0.325 5.325 29 C 0.134 3.866 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.243 0.757 34 H 0.419 0.581 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.046 0.954 43 H -0.001 1.001 44 H 0.051 0.949 45 H 0.248 0.752 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -2.335 -7.741 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.035 3.965 4 N -0.198 5.198 5 C 0.056 3.944 6 N -0.263 5.263 7 C -0.057 4.057 8 C 0.379 3.621 9 O -0.431 6.431 10 N -0.311 5.311 11 C 0.012 3.988 12 C 0.052 3.948 13 H 0.051 0.949 14 C -0.159 4.159 15 C -0.140 4.140 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.326 5.326 19 C -0.367 4.367 20 H 0.074 0.926 21 C -0.218 4.218 22 N -0.563 5.563 23 Si 0.765 3.235 24 H -0.206 1.206 25 H -0.215 1.215 26 H -0.234 1.234 27 N -0.131 5.131 28 N -0.106 5.106 29 C 0.000 4.000 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.259 0.741 34 H 0.258 0.742 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.877 -2.934 -7.664 16.990 hybrid contribution -1.159 0.098 1.181 1.658 sum -16.036 -2.836 -6.483 17.528 Atomic orbital electron populations 1.20856 0.82767 1.06383 1.05101 1.21291 1.01567 0.90214 1.02633 1.24725 0.86415 1.01834 0.83531 1.68209 1.11334 1.21419 1.18843 1.22845 0.89146 0.84245 0.98147 1.70799 1.13212 1.14142 1.28109 1.24114 0.95213 0.88011 0.98326 1.16460 0.81532 0.85574 0.78511 1.90736 1.86692 1.13059 1.52643 1.45919 1.04598 1.11833 1.68737 1.21581 0.80209 0.95192 1.01843 1.20857 0.93394 0.90954 0.89613 0.94927 1.21813 0.93917 0.97955 1.02253 1.21349 0.98291 0.97544 0.96818 1.22046 0.97850 0.99502 0.97952 1.20606 0.85714 0.89619 0.98835 1.44211 1.22111 1.42789 1.23494 1.19037 1.06917 0.92147 1.18588 0.92650 1.25393 0.99300 0.95365 1.01784 1.70037 1.46392 0.97311 1.42566 0.85889 0.80088 0.76238 0.81308 1.20619 1.21516 1.23364 1.78669 0.95397 1.08331 1.30711 1.49098 1.08401 1.07528 1.45536 1.23009 0.77264 1.04441 0.95283 0.88454 0.87333 0.88898 0.74063 0.74229 0.89246 0.92331 0.89507 0.92431 0.92486 0.90474 0.91722 0.93485 0.98242 0.93081 0.94265 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 10.03 71.24 0.71 0.74 16 2 C -0.15 -1.61 5.87 -19.99 -0.12 -1.72 16 3 C 0.22 3.31 10.96 85.25 0.93 4.25 16 4 N -0.48 -14.71 10.48 -197.55 -2.07 -16.78 16 5 C 0.42 15.93 8.99 261.57 2.35 18.28 16 6 N -0.53 -24.45 10.89 -192.62 -2.10 -26.54 16 7 C 0.23 10.34 7.92 137.39 1.09 11.43 16 8 C 0.60 27.77 7.84 86.87 0.68 28.45 16 9 O -0.55 -26.76 17.07 -3.78 -0.06 -26.83 16 10 N -0.66 -29.61 3.86 -465.69 -1.80 -31.41 16 11 C 0.13 5.32 4.43 86.38 0.38 5.71 16 12 C 0.16 6.24 3.00 44.83 0.13 6.37 16 13 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 14 C -0.12 -3.79 5.35 30.53 0.16 -3.63 16 15 C -0.10 -3.12 5.89 30.62 0.18 -2.94 16 16 C -0.13 -4.92 6.08 30.67 0.19 -4.73 16 17 C 0.18 8.40 5.25 86.36 0.45 8.85 16 18 N -0.60 -29.06 2.98 -676.00 -2.01 -31.07 16 19 C -0.24 -12.82 6.91 84.03 0.58 -12.24 16 20 H 0.06 3.11 5.92 -2.91 -0.02 3.10 16 21 C -0.02 -1.21 5.05 84.86 0.43 -0.78 16 22 N -0.92 -54.36 11.12 21.65 0.24 -54.12 16 23 Si 0.93 48.92 29.57 68.60 2.03 50.95 16 24 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 26 H -0.31 -16.89 7.11 99.48 0.71 -16.18 16 27 N -0.30 -12.09 12.78 -52.60 -0.67 -12.76 16 28 N -0.33 -10.65 3.91 -197.58 -0.77 -11.43 16 29 C 0.13 2.42 10.97 83.43 0.92 3.34 16 30 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.11 -0.46 8.10 -2.39 -0.02 -0.47 16 32 H 0.09 -0.20 8.09 -2.39 -0.02 -0.22 16 33 H 0.24 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.42 20.57 7.05 -92.71 -0.65 19.92 16 35 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.06 2.48 7.42 -2.38 -0.02 2.47 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.05 2.77 6.18 -2.38 -0.01 2.75 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -84.96 377.08 2.22 -82.74 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.37 Total: 15.88 kcal Atomic # 6 Polarization: 52.30 SS G_CDS: 9.08 Total: 61.37 kcal Atomic # 7 Polarization: -174.93 SS G_CDS: -9.18 Total: -184.11 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -84.96 2.22 -82.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024499249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.909 kcal (2) G-P(sol) polarization free energy of solvation -84.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds